CF834875

Overview
NameCF834875
Unique NameCF834875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF834875 vs. ExPASy Swiss-Prot
Match: ODO1_STAEQ (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=odhA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 46/137 (33.58%), Postives = 72/137 (52.55%), Query Frame = 1 
Query:  169 NWHIVNVTTPASYFHVLRRQ---IHG*FRKPLSVMSPKNLLRRKECKSNLSEFDDVQGHPGFDKQGTTFKRLIKDHNDHSDLEEGIIRLILCSGKVYYELYE*RKKHSASDIAICMVEQLCPFPYDLVQRELKRYPN 570
            N  +VN+++ ++YFH+LR Q   +     +PL VMSPK+LLR K     + EF               FK +I +  D    E+ + ++IL SGK+Y +L E   K+    I +  VE+L PFP + ++  LK  P+
Sbjct:  746 NSTVVNLSSASNYFHLLRAQAASLDTLEMRPLIVMSPKSLLRNKTVAKPIDEFTS-----------GGFKPIITEDID----EQKVKKVILASGKMYIDLKEYLAKNPNDSILLIAVERLYPFPEEEIKEVLKSLPH 867
The following BLAST results are available for this feature:
BLAST of CF834875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
ODO1_STAEQ9.726e-1133.582-oxoglutarate dehydrogenase E1 component OS=Staph... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06E09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834875 ID=CF834875; Name=CF834875; organism=Citrus sinensis; type=EST; length=571bp
ACGGGTTGCGCCAATCTGGGCTTGTTGTGATGCTCCCTCATGGTTATGAT
GGTCAAGGCCCTGAACATTCAAGTGCACGATTGGAGCGGTTCCTTCATAT
GAGTGATGACAATCCATATGTTATACCTGAGATGGATTGCAACTCTTCAG
ACTCGAATCCAAAAATGCAACTGGCATATTGTGAATGTTACAACTCCTGC
TAGCTACTTCCATGTTTTGAGGCGTCAGATCCACGGATAATTCCGTAAGC
CTCTCTCTGTGATGTCACCCAAAAATCTGCTTCGTCGCAAGGAATGCAAA
TCAAATCTTTCTGAGTTTGATGATGTACAAGGTCACCCAGGTTTTGACAA
ACAAGGGACTACATTTAAACGGCTTATAAAGGATCACAATGATCACTCTG
ATCTTGAGGAGGGCATCATACGTCTGATTCTTTGTTCTGGAAAAGTCTAT
TATGAGCTTTATGAATAGCGAAAGAAGCACAGTGCAAGTGACATTGCTAT
TTGTATGGTGGAACAGCTTTGTCCTTTCCCATATGACCTTGTCCAGCGGG
AGCTTAAACGATATCCAAATG
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