CF834880

Overview
NameCF834880
Unique NameCF834880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length376
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1992 contig Csv1_Contig1992:1302..1677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834880 vs. ExPASy Swiss-Prot
Match: KSG7_ARATH (Shaggy-related protein kinase eta OS=Arabidopsis thaliana GN=ASK7 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.095e-17
Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = -2
Query:  208 EACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQ 369
            EAC HPFF ELR+PNARLPNGRPFPPLFNFK QE+ G+S EL++KLIP+H ++Q
Sbjct:  317 EACAHPFFDELREPNARLPNGRPFPPLFNFK-QEVAGSSPELVNKLIPDHIKRQ 369          
BLAST of CF834880 vs. ExPASy Swiss-Prot
Match: MSK3_MEDSA (Glycogen synthase kinase-3 homolog MsK-3 OS=Medicago sativa GN=MSK-3 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.163e-17
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = -2
Query:  193 EACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQCPFLG 369
            EA +HPF+ ++RDPN RLPNGR  PPLFNFK  ELKG   E+L KL+P HARKQC   G
Sbjct:  351 EALVHPFYDDVRDPNTRLPNGRFLPPLFNFKVNELKGVPAEMLVKLVPPHARKQCALFG 409          
BLAST of CF834880 vs. ExPASy Swiss-Prot
Match: KSG2_ARATH (Shaggy-related protein kinase beta OS=Arabidopsis thaliana GN=ASK2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.749e-15
Identity = 38/53 (71.70%), Postives = 41/53 (77.36%), Query Frame = -2
Query:  211 EACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARK 369
            EAC HPFF +LRDP A LPNGR  PPLF+F  QEL GAS EL  +LIPEHARK
Sbjct:  379 EACAHPFFDDLRDPRASLPNGRALPPLFDFTAQELAGASVELRHRLIPEHARK 431          
BLAST of CF834880 vs. ExPASy Swiss-Prot
Match: KSG8_ARATH (Shaggy-related protein kinase theta OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 35/52 (67.31%), Postives = 38/52 (73.08%), Query Frame = -2
Query:  214 EACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHAR 369
            EAC HPFF +LRDPN  LPNGR  PPLFNF  QEL GAS EL  +LIP H +
Sbjct:  415 EACAHPFFDDLRDPNVSLPNGRALPPLFNFTAQELAGASTELRQRLIPAHCQ 466          
BLAST of CF834880 vs. ExPASy Swiss-Prot
Match: KSGT_BRANA (Shaggy-related protein kinase theta OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13
Identity = 34/52 (65.38%), Postives = 37/52 (71.15%), Query Frame = -2
Query:  214 EACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHAR 369
            EAC HPFF +LR PN  LPNGR  PPLFNF  QEL GAS EL  +LIP H +
Sbjct:  411 EACAHPFFDDLRAPNVSLPNGRALPPLFNFTAQELAGASTELRQRLIPAHCQ 462          
The following BLAST results are available for this feature:
BLAST of CF834880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
KSG7_ARATH1.095e-1774.07Shaggy-related protein kinase eta OS=Arabidopsis t... [more]
MSK3_MEDSA4.163e-1764.41Glycogen synthase kinase-3 homolog MsK-3 OS=Medica... [more]
KSG2_ARATH1.749e-1571.70Shaggy-related protein kinase beta OS=Arabidopsis ... [more]
KSG8_ARATH2.526e-1467.31Shaggy-related protein kinase theta OS=Arabidopsis... [more]
KSGT_BRANA2.138e-1365.38Shaggy-related protein kinase theta OS=Brassica na... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06E13_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834880 ID=CF834880; Name=CF834880; organism=Citrus sinensis; type=EST; length=376bp
AAATATTCACTTCCCTTATGAGTGCATAATCTAACTGAACTGCCACTCTC
ACTCCTGCATGCTTACTTCAGTCGGAACAGTTCTTGGTGAGAATAAACAA
CGGATGTATCCCTAATCCGTCAGATAGCATAAAGACAAATTTAGTACAAT
AAATTTACTCTAATATCCAACAACACATGTTGAAATCTAGAAACCAAGGA
AGGGACATTGCTTTCGTGCATGTTCTGGAATCAGTTTTGATAAGAGCTCC
TTGCTTGCCCCTTTCAGCTCTTGAGGTTTAAAGTTGAAAAGGGGAGGAAA
GGGACGCCCATTAGGGAGACGTGCGTTAGGATCACGAAGTTCATAAAAAA
ATGGATGAATACAGGCTTCTCCACCA
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