CF834881

Overview
NameCF834881
Unique NameCF834881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length411
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1992 contig Csv1_Contig1992:1301..1711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834881 vs. ExPASy Swiss-Prot
Match: KSG7_ARATH (Shaggy-related protein kinase eta OS=Arabidopsis thaliana GN=ASK7 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.868e-18
Identity = 41/56 (73.21%), Postives = 49/56 (87.50%), Query Frame = 3
Query:    3 ALEPCIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQ 170
            ALE C HPFF ELR+PNARLPNGRPFPPLFNFK QE+ G+S EL++KLIP+H ++Q
Sbjct:  315 ALEACAHPFFDELREPNARLPNGRPFPPLFNFK-QEVAGSSPELVNKLIPDHIKRQ 369          
BLAST of CF834881 vs. ExPASy Swiss-Prot
Match: MSK3_MEDSA (Glycogen synthase kinase-3 homolog MsK-3 OS=Medicago sativa GN=MSK-3 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.850e-17
Identity = 39/61 (63.93%), Postives = 45/61 (73.77%), Query Frame = 3
Query:    3 ALEPCIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQCPFLG 185
            ALE  +HPF+ ++RDPN RLPNGR  PPLFNFK  ELKG   E+L KL+P HARKQC   G
Sbjct:  349 ALEALVHPFYDDVRDPNTRLPNGRFLPPLFNFKVNELKGVPAEMLVKLVPPHARKQCALFG 409          
BLAST of CF834881 vs. ExPASy Swiss-Prot
Match: KSG2_ARATH (Shaggy-related protein kinase beta OS=Arabidopsis thaliana GN=ASK2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.772e-16
Identity = 39/55 (70.91%), Postives = 42/55 (76.36%), Query Frame = 3
Query:    3 ALEPCIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARK 167
            ALE C HPFF +LRDP A LPNGR  PPLF+F  QEL GAS EL  +LIPEHARK
Sbjct:  377 ALEACAHPFFDDLRDPRASLPNGRALPPLFDFTAQELAGASVELRHRLIPEHARK 431          
BLAST of CF834881 vs. ExPASy Swiss-Prot
Match: KSG8_ARATH (Shaggy-related protein kinase theta OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.122e-14
Identity = 36/54 (66.67%), Postives = 39/54 (72.22%), Query Frame = 3
Query:    3 ALEPCIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHAR 164
            ALE C HPFF +LRDPN  LPNGR  PPLFNF  QEL GAS EL  +LIP H +
Sbjct:  413 ALEACAHPFFDDLRDPNVSLPNGRALPPLFNFTAQELAGASTELRQRLIPAHCQ 466          
BLAST of CF834881 vs. ExPASy Swiss-Prot
Match: KSGT_BRANA (Shaggy-related protein kinase theta OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.501e-14
Identity = 35/54 (64.81%), Postives = 38/54 (70.37%), Query Frame = 3
Query:    3 ALEPCIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHAR 164
            ALE C HPFF +LR PN  LPNGR  PPLFNF  QEL GAS EL  +LIP H +
Sbjct:  409 ALEACAHPFFDDLRAPNVSLPNGRALPPLFNFTAQELAGASTELRQRLIPAHCQ 462          
The following BLAST results are available for this feature:
BLAST of CF834881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
KSG7_ARATH4.868e-1873.21Shaggy-related protein kinase eta OS=Arabidopsis t... [more]
MSK3_MEDSA1.850e-1763.93Glycogen synthase kinase-3 homolog MsK-3 OS=Medica... [more]
KSG2_ARATH7.772e-1670.91Shaggy-related protein kinase beta OS=Arabidopsis ... [more]
KSG8_ARATH1.122e-1466.67Shaggy-related protein kinase theta OS=Arabidopsis... [more]
KSGT_BRANA9.501e-1464.81Shaggy-related protein kinase theta OS=Brassica na... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06E13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834881 ID=CF834881; Name=CF834881; organism=Citrus sinensis; type=EST; length=411bp
CTGCTTTAGAACCCTGTATTCATCCATTTTTTTATGAACTTCGTGATCCT
AACGCACGTCTCCCTAATGGGCGTCCCTTTCCTCCCCTTTTCAACTTTAA
ACCTCAAGAGCTGAAAGGGGCAAGCAAGGAGCTCTTATCAAAACTGATTC
CAGAACATGCACGAAAGCAATGTCCCTTCCTTGGTTTCTAGATTTCAACA
TGTGTTGTTGGATATTAGAGTAAATTTATTGTACTAAATTTGTCTTTATG
CTATCTGACGGATTAGGGATACATCCGTTGTTTATTCTCACCAAGAACTG
TTCCGACTGAAGTAAGCATGCAAAAGTGAGAGTGGCAGTTCAGTTAGATT
ATGCACTGATGAACAAAGTGAATATTTATGTGATGCATTTTGTTTAAAAA
AAAAAAAAAAA
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