CF834882

Overview
NameCF834882
Unique NameCF834882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length407
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834882 vs. ExPASy Swiss-Prot
Match: KSG7_ARATH (Shaggy-related protein kinase eta OS=Arabidopsis thaliana GN=ASK7 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.286e-18
Identity = 42/56 (75.00%), Postives = 50/56 (89.29%), Query Frame = -2
Query:  239 ALEACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQ 406
            ALEAC HPFF ELR+PNARLPNGRPFPPLFNFK QE+ G+S EL++KLIP+H ++Q
Sbjct:  315 ALEACAHPFFDELREPNARLPNGRPFPPLFNFK-QEVAGSSPELVNKLIPDHIKRQ 369          
BLAST of CF834882 vs. ExPASy Swiss-Prot
Match: MSK3_MEDSA (Glycogen synthase kinase-3 homolog MsK-3 OS=Medicago sativa GN=MSK-3 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.887e-18
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = -2
Query:  224 ALEACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQCPFLG 406
            ALEA +HPF+ ++RDPN RLPNGR  PPLFNFK  ELKG   E+L KL+P HARKQC   G
Sbjct:  349 ALEALVHPFYDDVRDPNTRLPNGRFLPPLFNFKVNELKGVPAEMLVKLVPPHARKQCALFG 409          
BLAST of CF834882 vs. ExPASy Swiss-Prot
Match: KSG2_ARATH (Shaggy-related protein kinase beta OS=Arabidopsis thaliana GN=ASK2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.053e-16
Identity = 40/55 (72.73%), Postives = 43/55 (78.18%), Query Frame = -2
Query:  242 ALEACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARK 406
            ALEAC HPFF +LRDP A LPNGR  PPLF+F  QEL GAS EL  +LIPEHARK
Sbjct:  377 ALEACAHPFFDDLRDPRASLPNGRALPPLFDFTAQELAGASVELRHRLIPEHARK 431          
BLAST of CF834882 vs. ExPASy Swiss-Prot
Match: KSG8_ARATH (Shaggy-related protein kinase theta OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 2.965e-15
Identity = 37/54 (68.52%), Postives = 40/54 (74.07%), Query Frame = -2
Query:  245 ALEACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHAR 406
            ALEAC HPFF +LRDPN  LPNGR  PPLFNF  QEL GAS EL  +LIP H +
Sbjct:  413 ALEACAHPFFDDLRDPNVSLPNGRALPPLFNFTAQELAGASTELRQRLIPAHCQ 466          
BLAST of CF834882 vs. ExPASy Swiss-Prot
Match: KSGT_BRANA (Shaggy-related protein kinase theta OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.510e-14
Identity = 36/54 (66.67%), Postives = 39/54 (72.22%), Query Frame = -2
Query:  245 ALEACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHAR 406
            ALEAC HPFF +LR PN  LPNGR  PPLFNF  QEL GAS EL  +LIP H +
Sbjct:  409 ALEACAHPFFDDLRAPNVSLPNGRALPPLFNFTAQELAGASTELRQRLIPAHCQ 462          
BLAST of CF834882 vs. ExPASy Swiss-Prot
Match: GSK3B_SPECI (Glycogen synthase kinase-3 beta OS=Spermophilus citellus GN=GSK3B PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.558e-11
Identity = 34/55 (61.82%), Postives = 38/55 (69.09%), Query Frame = -2
Query:  239 LEACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQ 403
            LEAC H FF ELRDPN +LPNGR  P LFNF  QEL  ++  L + LIP HAR Q
Sbjct:  332 LEACAHSFFDELRDPNVKLPNGRDTPALFNFTTQEL-SSNPPLATILIPPHARIQ 385          
BLAST of CF834882 vs. ExPASy Swiss-Prot
Match: GSK3B_RAT (Glycogen synthase kinase-3 beta OS=Rattus norvegicus GN=Gsk3b PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.558e-11
Identity = 34/55 (61.82%), Postives = 38/55 (69.09%), Query Frame = -2
Query:  239 LEACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQ 403
            LEAC H FF ELRDPN +LPNGR  P LFNF  QEL  ++  L + LIP HAR Q
Sbjct:  332 LEACAHSFFDELRDPNVKLPNGRDTPALFNFTTQEL-SSNPPLATILIPPHARIQ 385          
BLAST of CF834882 vs. ExPASy Swiss-Prot
Match: GSK3B_MOUSE (Glycogen synthase kinase-3 beta OS=Mus musculus GN=Gsk3b PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.558e-11
Identity = 34/55 (61.82%), Postives = 38/55 (69.09%), Query Frame = -2
Query:  239 LEACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQ 403
            LEAC H FF ELRDPN +LPNGR  P LFNF  QEL  ++  L + LIP HAR Q
Sbjct:  332 LEACAHSFFDELRDPNVKLPNGRDTPALFNFTTQEL-SSNPPLATILIPPHARIQ 385          
BLAST of CF834882 vs. ExPASy Swiss-Prot
Match: GSK3B_HUMAN (Glycogen synthase kinase-3 beta OS=Homo sapiens GN=GSK3B PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.558e-11
Identity = 34/55 (61.82%), Postives = 38/55 (69.09%), Query Frame = -2
Query:  239 LEACIHPFFYELRDPNARLPNGRPFPPLFNFKPQELKGASKELLSKLIPEHARKQ 403
            LEAC H FF ELRDPN +LPNGR  P LFNF  QEL  ++  L + LIP HAR Q
Sbjct:  332 LEACAHSFFDELRDPNVKLPNGRDTPALFNFTTQEL-SSNPPLATILIPPHARIQ 385          
The following BLAST results are available for this feature:
BLAST of CF834882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
KSG7_ARATH1.286e-1875.00Shaggy-related protein kinase eta OS=Arabidopsis t... [more]
MSK3_MEDSA4.887e-1865.57Glycogen synthase kinase-3 homolog MsK-3 OS=Medica... [more]
KSG2_ARATH2.053e-1672.73Shaggy-related protein kinase beta OS=Arabidopsis ... [more]
KSG8_ARATH2.965e-1568.52Shaggy-related protein kinase theta OS=Arabidopsis... [more]
KSGT_BRANA2.510e-1466.67Shaggy-related protein kinase theta OS=Brassica na... [more]
GSK3B_SPECI7.558e-1161.82Glycogen synthase kinase-3 beta OS=Spermophilus ci... [more]
GSK3B_RAT7.558e-1161.82Glycogen synthase kinase-3 beta OS=Rattus norvegic... [more]
GSK3B_MOUSE7.558e-1161.82Glycogen synthase kinase-3 beta OS=Mus musculus GN... [more]
GSK3B_HUMAN7.558e-1161.82Glycogen synthase kinase-3 beta OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06E14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834882 ID=CF834882; Name=CF834882; organism=Citrus sinensis; type=EST; length=407bp
TTTTTTTTTTTTTTTTAACAAATGCATACATAAATATTAACTTCCCTTAA
AAGCGCATAATGTAANTGAACTGCCACTCTCACTCTTTCATGGTTACTTC
AGTCGGAACAGTTCTTGGTGAGAATAAACAACGGATGTATCCCTAATCCG
TCAGATAGCATAAAGACAAATTTAGTACAATAAATTTACTCTAATATCCA
ACAACACATGTTGAAATCTAGAAACCAAGGAAGGGACATTGCTTTCGTGC
ATGTTCTGGAATCAGTTTTGATAAGAGCTCCTTGCTTGCCCCTTTCAGCT
CTTGAGGTTTAAAGTTGAAAAGGGGAGGAAAGGGACGCCCATTAGGGAGA
CGTGCGTTAGGATCACGAAGTTCATAAAAAAATGGATGAATACAGGCTTC
TAAAGCA
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