CF834888
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF834888 vs. ExPASy Swiss-Prot
Match: RL35A_MOUSE (60S ribosomal protein L35a OS=Mus musculus GN=Rpl35a PE=2 SV=2) HSP 1 Score: 97.0561 bits (240), Expect = 4.997e-20 Identity = 52/109 (47.71%), Postives = 71/109 (65.14%), Query Frame = -2 Query: 124 KLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKT-------KKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 429 +L+ GYKR NQ +T+L++I+GV ++E +Y GKR AY+ KAK K N T R IWGKV R+H NSG+VRAKF+SNL K++G R+RV +YP+ I Sbjct: 4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKT--RVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
BLAST of CF834888 vs. ExPASy Swiss-Prot
Match: RL35A_ICTPU (60S ribosomal protein L35a OS=Ictalurus punctatus GN=rpl35a PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 4.997e-20 Identity = 51/109 (46.79%), Postives = 71/109 (65.14%), Query Frame = -2 Query: 124 KLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKT-------KKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 429 +L+ GYKR NQ +T+L++++GV + E+ +Y GKR AY+ KAK K N T R IWGKV R+H NSG+VRAKF SNL PK++G R+RV +YP+ + Sbjct: 4 RLWCKAIFAGYKRGLRNQREHTALLKVEGVYSRNEVDFYLGKRCAYVYKAKKTTVTPGGKPNKT--RVIWGKVTRAHGNSGMVRAKFTSNLPPKAIGHRIRVMLYPSRV 110
BLAST of CF834888 vs. ExPASy Swiss-Prot
Match: RL35A_PONAB (60S ribosomal protein L35a OS=Pongo abelii GN=RPL35A PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 6.526e-20 Identity = 51/100 (51.00%), Postives = 68/100 (68.00%), Query Frame = -2 Query: 124 GYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKT-------KKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 402 GYKR NQ +T+L++I+GV ++E +Y GKR AY+ KAK K N T R IWGKV R+H NSG+VRAKF+SNL K++G R+RV +YP+ I Sbjct: 13 GYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKT--RVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
BLAST of CF834888 vs. ExPASy Swiss-Prot
Match: RL35A_MACFA (60S ribosomal protein L35a OS=Macaca fascicularis GN=RPL35A PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 6.526e-20 Identity = 51/100 (51.00%), Postives = 68/100 (68.00%), Query Frame = -2 Query: 124 GYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKT-------KKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 402 GYKR NQ +T+L++I+GV ++E +Y GKR AY+ KAK K N T R IWGKV R+H NSG+VRAKF+SNL K++G R+RV +YP+ I Sbjct: 13 GYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKT--RVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
BLAST of CF834888 vs. ExPASy Swiss-Prot
Match: RL35A_HUMAN (60S ribosomal protein L35a OS=Homo sapiens GN=RPL35A PE=1 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 6.526e-20 Identity = 51/100 (51.00%), Postives = 68/100 (68.00%), Query Frame = -2 Query: 124 GYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKT-------KKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 402 GYKR NQ +T+L++I+GV ++E +Y GKR AY+ KAK K N T R IWGKV R+H NSG+VRAKF+SNL K++G R+RV +YP+ I Sbjct: 13 GYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKT--RVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
BLAST of CF834888 vs. ExPASy Swiss-Prot
Match: RL35A_CAEEL (60S ribosomal protein L35a OS=Caenorhabditis elegans GN=rpl-33 PE=1 SV=3) HSP 1 Score: 96.6709 bits (239), Expect = 6.526e-20 Identity = 50/108 (46.30%), Postives = 69/108 (63.89%), Query Frame = -2 Query: 124 KLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKA--KTKKNG----THYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 429 +LYV G+KR Q +TSL++++GV KE+ +Y GKR+ Y+ KA KT K G T R IWGK+ R H N+G VRAKF N+ P ++G R+RV +YP+NI Sbjct: 17 RLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYKAHNKTLKTGHTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSNI 124
BLAST of CF834888 vs. ExPASy Swiss-Prot
Match: RL35A_BOVIN (60S ribosomal protein L35a OS=Bos taurus GN=RPL35A PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 8.523e-20 Identity = 50/100 (50.00%), Postives = 68/100 (68.00%), Query Frame = -2 Query: 124 GYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKT-------KKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 402 GYKR NQ +T+L++I+GV ++E +Y GKR AY+ KAK K N T R IWGK+ R+H NSG+VRAKF+SNL K++G R+RV +YP+ I Sbjct: 13 GYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKT--RVIWGKITRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
BLAST of CF834888 vs. ExPASy Swiss-Prot
Match: RL33B_SCHPO (60S ribosomal protein L33-B OS=Schizosaccharomyces pombe GN=rpl33b PE=1 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.113e-19 Identity = 49/107 (45.79%), Postives = 68/107 (63.55%), Query Frame = -2 Query: 124 QGERVKLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKTKKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 444 QG R LYV L ++RSK +P TS+++I+G + KEE +Y GKR+ Y+ K+ G+ R IWG +AR H NSG VRA+F NL K+ G +RV +YP+NI Sbjct: 4 QGHR--LYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAVRGSKIRVIWGTIARPHGNSGAVRARFVHNLPAKTFGSSLRVMLYPSNI 108 The following BLAST results are available for this feature:
BLAST of CF834888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834888 ID=CF834888; Name=CF834888; organism=Citrus sinensis; type=EST; length=502bpback to top |