CF834888

Overview
NameCF834888
Unique NameCF834888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1414 contig Csv1_Contig1414:147..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834888 vs. ExPASy Swiss-Prot
Match: RL35A_MOUSE (60S ribosomal protein L35a OS=Mus musculus GN=Rpl35a PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 4.997e-20
Identity = 52/109 (47.71%), Postives = 71/109 (65.14%), Query Frame = -2
Query:  124 KLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKT-------KKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 429
            +L+      GYKR   NQ  +T+L++I+GV  ++E  +Y GKR AY+ KAK        K N T  R IWGKV R+H NSG+VRAKF+SNL  K++G R+RV +YP+ I
Sbjct:    4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKT--RVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of CF834888 vs. ExPASy Swiss-Prot
Match: RL35A_ICTPU (60S ribosomal protein L35a OS=Ictalurus punctatus GN=rpl35a PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.997e-20
Identity = 51/109 (46.79%), Postives = 71/109 (65.14%), Query Frame = -2
Query:  124 KLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKT-------KKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 429
            +L+      GYKR   NQ  +T+L++++GV  + E+ +Y GKR AY+ KAK        K N T  R IWGKV R+H NSG+VRAKF SNL PK++G R+RV +YP+ +
Sbjct:    4 RLWCKAIFAGYKRGLRNQREHTALLKVEGVYSRNEVDFYLGKRCAYVYKAKKTTVTPGGKPNKT--RVIWGKVTRAHGNSGMVRAKFTSNLPPKAIGHRIRVMLYPSRV 110          
BLAST of CF834888 vs. ExPASy Swiss-Prot
Match: RL35A_PONAB (60S ribosomal protein L35a OS=Pongo abelii GN=RPL35A PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.526e-20
Identity = 51/100 (51.00%), Postives = 68/100 (68.00%), Query Frame = -2
Query:  124 GYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKT-------KKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 402
            GYKR   NQ  +T+L++I+GV  ++E  +Y GKR AY+ KAK        K N T  R IWGKV R+H NSG+VRAKF+SNL  K++G R+RV +YP+ I
Sbjct:   13 GYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKT--RVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of CF834888 vs. ExPASy Swiss-Prot
Match: RL35A_MACFA (60S ribosomal protein L35a OS=Macaca fascicularis GN=RPL35A PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.526e-20
Identity = 51/100 (51.00%), Postives = 68/100 (68.00%), Query Frame = -2
Query:  124 GYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKT-------KKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 402
            GYKR   NQ  +T+L++I+GV  ++E  +Y GKR AY+ KAK        K N T  R IWGKV R+H NSG+VRAKF+SNL  K++G R+RV +YP+ I
Sbjct:   13 GYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKT--RVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of CF834888 vs. ExPASy Swiss-Prot
Match: RL35A_HUMAN (60S ribosomal protein L35a OS=Homo sapiens GN=RPL35A PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 6.526e-20
Identity = 51/100 (51.00%), Postives = 68/100 (68.00%), Query Frame = -2
Query:  124 GYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKT-------KKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 402
            GYKR   NQ  +T+L++I+GV  ++E  +Y GKR AY+ KAK        K N T  R IWGKV R+H NSG+VRAKF+SNL  K++G R+RV +YP+ I
Sbjct:   13 GYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKT--RVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of CF834888 vs. ExPASy Swiss-Prot
Match: RL35A_CAEEL (60S ribosomal protein L35a OS=Caenorhabditis elegans GN=rpl-33 PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 6.526e-20
Identity = 50/108 (46.30%), Postives = 69/108 (63.89%), Query Frame = -2
Query:  124 KLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKA--KTKKNG----THYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 429
            +LYV     G+KR    Q  +TSL++++GV  KE+  +Y GKR+ Y+ KA  KT K G    T  R IWGK+ R H N+G VRAKF  N+ P ++G R+RV +YP+NI
Sbjct:   17 RLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYKAHNKTLKTGHTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSNI 124          
BLAST of CF834888 vs. ExPASy Swiss-Prot
Match: RL35A_BOVIN (60S ribosomal protein L35a OS=Bos taurus GN=RPL35A PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.523e-20
Identity = 50/100 (50.00%), Postives = 68/100 (68.00%), Query Frame = -2
Query:  124 GYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKT-------KKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 402
            GYKR   NQ  +T+L++I+GV  ++E  +Y GKR AY+ KAK        K N T  R IWGK+ R+H NSG+VRAKF+SNL  K++G R+RV +YP+ I
Sbjct:   13 GYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKT--RVIWGKITRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of CF834888 vs. ExPASy Swiss-Prot
Match: RL33B_SCHPO (60S ribosomal protein L33-B OS=Schizosaccharomyces pombe GN=rpl33b PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.113e-19
Identity = 49/107 (45.79%), Postives = 68/107 (63.55%), Query Frame = -2
Query:  124 QGERVKLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKTKKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 444
            QG R  LYV    L ++RSK   +P TS+++I+G + KEE  +Y GKR+ Y+ K+     G+  R IWG +AR H NSG VRA+F  NL  K+ G  +RV +YP+NI
Sbjct:    4 QGHR--LYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAVRGSKIRVIWGTIARPHGNSGAVRARFVHNLPAKTFGSSLRVMLYPSNI 108          
The following BLAST results are available for this feature:
BLAST of CF834888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RL35A_MOUSE4.997e-2047.7160S ribosomal protein L35a OS=Mus musculus GN=Rpl3... [more]
RL35A_ICTPU4.997e-2046.7960S ribosomal protein L35a OS=Ictalurus punctatus ... [more]
RL35A_PONAB6.526e-2051.0060S ribosomal protein L35a OS=Pongo abelii GN=RPL3... [more]
RL35A_MACFA6.526e-2051.0060S ribosomal protein L35a OS=Macaca fascicularis ... [more]
RL35A_HUMAN6.526e-2051.0060S ribosomal protein L35a OS=Homo sapiens GN=RPL3... [more]
RL35A_CAEEL6.526e-2046.3060S ribosomal protein L35a OS=Caenorhabditis elega... [more]
RL35A_BOVIN8.523e-2050.0060S ribosomal protein L35a OS=Bos taurus GN=RPL35A... [more]
RL33B_SCHPO1.113e-1945.7960S ribosomal protein L33-B OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06E18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834888 ID=CF834888; Name=CF834888; organism=Citrus sinensis; type=EST; length=502bp
AACACCCTAGCCAGTATAACTCTCGAGTCCAAAATCTTGAAACATAACTC
TTAAGTGAATAAATCACCCCTTCAAAAGGTACCTTACTTTTGGATCTAGT
AGCTATTCGAACCATGTTGCTCATATGTTGTTGGGATACATGAAAACCCT
AACTCTATCTCCCATGGATTTGGGAAGGAGATTGGACTTGAACTTGGCGC
GAACGATGCCGCTGTTACTGTGAGATCTGGCAACTTTCCCCCAAATGCAA
CGATAGTGTGTCCCATTCTTCTTAGTCTTGGCCTTGCAAATGTAAGCCAA
ACGCTTGCCTCAGTACCACGCCATCTCTTCCTTTATGTTCACTCCCTTGA
TCTGAATCAATGATGTGTTTGGATACTGGTTTGATTTTGACCTTTTGTAT
CCCAGAATTGTTCCTCAAACATAGAGTTTGACGCGCTCGCCTTGCCTGCC
CTTCACCATTGTTCACGATTGAAGCTCTGCCTGCCTACTTGCCGCCTGAG
CC
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