CF834917

Overview
NameCF834917
Unique NameCF834917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: PPID_RAT (40 kDa peptidyl-prolyl cis-trans isomerase OS=Rattus norvegicus GN=Ppid PE=1 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 5.873e-24
Identity = 57/105 (54.29%), Postives = 68/105 (64.76%), Query Frame = -2
Query:  253 FMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 567
            FM Q           GESIYG KF DENF  KH   G+LSMANAGP TNGSQFF+ T  T  LDGKHVVFGQV++G+ V + +E V  +  +  K  VIA+CG+L
Sbjct:   80 FMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARMLENVEVNGEKPAKLCVIAECGEL 184          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: PPID_ASHGO (Peptidyl-prolyl cis-trans isomerase D OS=Ashbya gossypii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.670e-24
Identity = 58/106 (54.72%), Postives = 69/106 (65.09%), Query Frame = -2
Query:  253 GFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 570
            GFMCQ           GESIYG KF DENF +KH  P +LSMANAGP TNGSQ F+  A T  LDGKHVVFG+V++G  VV+AIE+  +++ R    V I  CG L
Sbjct:   69 GFMCQFGDFTNGDGTGGESIYGEKFEDENFARKHDRPFLLSMANAGPNTNGSQCFITCAPTPHLDGKHVVFGEVIQGKRVVRAIERQETAADRPLADVRIDACGIL 174          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: PPID_CRYNE (Peptidyl-prolyl cis-trans isomerase D OS=Cryptococcus neoformans GN=CPR6 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.002e-23
Identity = 57/107 (53.27%), Postives = 69/107 (64.49%), Query Frame = -2
Query:  250 GFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 570
            GFM Q           GESIYG KF DENF  KH  P +LSMANAGPGTNGSQFF+ T  T  LDGKHVVFG+V+    +V+ IE + ++S R ++ V I+  G LS
Sbjct:   65 GFMLQGGDFTRGDGTGGESIYGEKFEDENFELKHDKPMLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGRVIYNRSLVRRIENIPTTSDRPDQAVTISSAGVLS 171          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: PPIA_PARPR (Peptidyl-prolyl cis-trans isomerase OS=Paramecium primaurelia PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.002e-23
Identity = 54/103 (52.43%), Postives = 64/103 (62.14%), Query Frame = -2
Query:  259 FMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCG 567
            FM Q           G+SIYG KFADENF  KHT P +LSMANAGP TNGSQFF+      WLDGKHVVFG+VV+G D ++  +K  S  G+    + I D G
Sbjct:   58 FMAQGGDFTNFNGTGGKSIYGEKFADENFKLKHTKPALLSMANAGPNTNGSQFFITFVPCPWLDGKHVVFGEVVDGFDTLELFKKNSSQQGKPKTTIKIVDSG 160          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: PPID_BOVIN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Bos taurus GN=PPID PE=1 SV=6)

HSP 1 Score: 109.383 bits (272), Expect = 1.308e-23
Identity = 58/105 (55.24%), Postives = 66/105 (62.86%), Query Frame = -2
Query:  253 FMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 567
            FM Q           GESIYG KF DENF  KH   G+LSMANAG  TNGSQFF+ T  T  LDGKHVVFGQV++GM V K +E V     +  K  VIA+CG+L
Sbjct:   80 FMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGEL 184          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: PPIB_ARTBE (Peptidyl-prolyl cis-trans isomerase B OS=Arthroderma benhamiae GN=CPR2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.308e-23
Identity = 58/106 (54.72%), Postives = 68/106 (64.15%), Query Frame = -2
Query:  253 FMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSS-SGRTNKPVVIADCGQL 567
            FM Q           G+SIYG+KF DENF  +HT  G+LSMANAG  TNGSQFF+ TA T WLDGKHVVFG+V+EG D+V  I+ V      R  K V I  CG+L
Sbjct:   91 FMIQGGDFTNGDGTGGKSIYGNKFEDENFKLRHTKKGVLSMANAGKDTNGSQFFITTAITAWLDGKHVVFGEVLEGYDIVDKIQVVPKGFQDRPTKDVKIVKCGEL 196          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: CYP40_ARATH (Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.308e-23
Identity = 58/107 (54.21%), Postives = 70/107 (65.42%), Query Frame = -2
Query:  253 GFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVG-SSSGRTNKPVVIADCGQL 570
            GFM Q           GESIYG KF DENF  KH   G+LSMAN+GP TNGSQFF+ T +T  LDGKHVVFG+V +GM VV++IE V        ++ VVI DCG++
Sbjct:   67 GFMIQGGDISANDGTGGESIYGLKFDDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGRVTKGMGVVRSIEHVSIEEQSCPSQDVVIHDCGEI 173          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: PPIH_CRYNE (Peptidyl-prolyl cis-trans isomerase H OS=Cryptococcus neoformans GN=CYP3 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.709e-23
Identity = 53/91 (58.24%), Postives = 69/91 (75.82%), Query Frame = -2
Query:  253 SIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 516
            SIYG++F DENF  KHTGPG+LSMAN+GP TNG QFF+ TA  E+LDGKH VFG+V++G+  V+ IE V   +G  N+P   V IA+CG++
Sbjct:   91 SIYGAQFEDENFKVKHTGPGLLSMANSGPNTNGCQFFITTAPAEFLDGKHCVFGRVIDGLLTVRKIENV--PTGANNRPKLQVRIAECGEM 179          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: PPIH_EMENI (Peptidyl-prolyl cis-trans isomerase H OS=Emericella nidulans GN=cyp3 PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.232e-23
Identity = 49/89 (55.06%), Postives = 68/89 (76.40%), Query Frame = -2
Query:  253 SIYGS-KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 516
            +IYG+ KF+DENF  +H  PG+LSMAN+GP TNG QFF+ T  T +L+GKHVVFGQV++GMD+V+ IE   ++  + N+ VVI  CG++
Sbjct:   95 TIYGTPKFSDENFTLRHDRPGLLSMANSGPNTNGCQFFITTTATPFLNGKHVVFGQVIDGMDIVRMIENTRTTRDKPNQDVVIIQCGEM 183          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: PPIH_ASPOR (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.915e-23
Identity = 53/106 (50.00%), Postives = 69/106 (65.09%), Query Frame = -2
Query:  253 FMCQXXXXXXXXXXXGESIYGS-KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 567
            FM Q             +IYG+ +F DENF+ KH  PG+LSMAN+GP TNG QFF+ T  T +L+ KHVVFGQVVEGMDVV+ IE   ++  + N+ V I  CG++
Sbjct:   76 FMIQGGDFVNGDGTGSRTIYGTPRFQDENFILKHDQPGLLSMANSGPNTNGCQFFITTTATPFLNNKHVVFGQVVEGMDVVRMIENTRTTRDKPNQDVTIIQCGEM 181          
The following BLAST results are available for this feature:
BLAST of CF834917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
PPID_RAT5.873e-2454.2940 kDa peptidyl-prolyl cis-trans isomerase OS=Ratt... [more]
PPID_ASHGO7.670e-2454.72Peptidyl-prolyl cis-trans isomerase D OS=Ashbya go... [more]
PPID_CRYNE1.002e-2353.27Peptidyl-prolyl cis-trans isomerase D OS=Cryptococ... [more]
PPIA_PARPR1.002e-2352.43Peptidyl-prolyl cis-trans isomerase OS=Paramecium ... [more]
PPID_BOVIN1.308e-2355.2440 kDa peptidyl-prolyl cis-trans isomerase OS=Bos ... [more]
PPIB_ARTBE1.308e-2354.72Peptidyl-prolyl cis-trans isomerase B OS=Arthroder... [more]
CYP40_ARATH1.308e-2354.21Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabi... [more]
PPIH_CRYNE1.709e-2358.24Peptidyl-prolyl cis-trans isomerase H OS=Cryptococ... [more]
PPIH_EMENI2.232e-2355.06Peptidyl-prolyl cis-trans isomerase H OS=Emericell... [more]
PPIH_ASPOR2.915e-2350.00Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06F14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834917 ID=CF834917; Name=CF834917; organism=Citrus sinensis; type=EST; length=571bp
TTTTTTTTTTTATAACAAGACAAGCCCTATCTTATTTAAAAAGCCATTTC
ATAGAAAGACATAAAAAACAGTTCATCAAGAACCCCCTCCGGAGACCCGA
TCCAACCCGAACAAGTAACATAGCAGGAAAATTAGATAAAGATTAAAAGT
CCTACAGACACGGCCACATAATAATAGATAACATAATCACCATCACGATC
GCGATCAGACGGCTCGTGATGATGGCGATCATTATCATGATCAAATCTAA
GACAATTGACCGCAATCAGCGATCACGACGGGCTTGTTGGTCCTTCCGGA
GCTGGACCCCACTTTCTCGATGGCCTTGACGACGTCCATTCCTTCGACGA
CTTGACCGAACACAACGTGCTTCCCATCGAGCCACTCGGTCTTGGCCGTA
CAGACGAAGAACTGAGATCCGTTGGTTCCGGGTCCGGCATTCGCCATGGA
GAGGATTCCGGGGCCGGTGTGCTTCTTCACGAAGTTCTCATCGGCGAATT
TTGAGCCGTAGATTGATTCGCCTCCGGTTCCGTTTCCGGCGGTGAAGTCT
CCCCCCTGGCACATGAATCCG
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