CF834917

Overview
NameCF834917
Unique NameCF834917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: PPIB_TREPA (Probable peptidyl-prolyl cis-trans isomerase OS=Treponema pallidum GN=ppiB PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.954e-17
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = -2
Query:  319 GSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAI 507
            G +F DE +   +H  PG+LSMANAGPGTNGSQFF+    T WLDGKH VFG+VVEGM+VV AI
Sbjct:  112 GYQFPDECDPALRHDSPGVLSMANAGPGTNGSQFFITHVATPWLDGKHTVFGKVVEGMEVVHAI 175          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: CYPE_DICDI (Peptidyl-prolyl cis-trans isomerase cypE OS=Dictyostelium discoideum GN=cypE PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.186e-16
Identity = 43/82 (52.44%), Postives = 55/82 (67.07%), Query Frame = -2
Query:  277 ESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPV 519
            ESIYG KF DE   + KHTG GILSMAN+G  +NGSQFF+    T WLDGKH +FG+V  GM   K ++K+ +     +KP+
Sbjct:   67 ESIYGKKFEDEITKELKHTGAGILSMANSGVNSNGSQFFITFGPTPWLDGKHTIFGRVKSGM---KVVQKMNAMQTNNDKPI 145          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: PPIL1_ASPNG (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Aspergillus niger GN=cypC PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.549e-16
Identity = 43/74 (58.11%), Postives = 52/74 (70.27%), Query Frame = -2
Query:  298 SIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSS 516
            SIYG KF DE N   KHTG GILSMAN+GP  NGSQFF+  A   WLDGKH +FG+V  GM V++ +  V ++S
Sbjct:   67 SIYGEKFEDEINPNLKHTGAGILSMANSGPNNNGSQFFITLAPQPWLDGKHTIFGRVKSGMRVIQRMGLVKTNS 140          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: PPIL1_MOUSE (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Mus musculus GN=Ppil1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.451e-16
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = -2
Query:  298 SIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSS 516
            SIYG +F DE     K TG GIL+MANAGP TNGSQFFV  A T+WLDGKH +FG+V +G+ +V  +  V ++S
Sbjct:   76 SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNS 149          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: PPIL1_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Homo sapiens GN=PPIL1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.451e-16
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = -2
Query:  298 SIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSS 516
            SIYG +F DE     K TG GIL+MANAGP TNGSQFFV  A T+WLDGKH +FG+V +G+ +V  +  V ++S
Sbjct:   76 SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNS 149          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: PPIL1_BOVIN (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Bos taurus GN=PPIL1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.451e-16
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = -2
Query:  298 SIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSS 516
            SIYG +F DE     K TG GIL+MANAGP TNGSQFFV  A T+WLDGKH +FG+V +G+ +V  +  V ++S
Sbjct:   76 SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNS 149          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: CYP9_CAEEL (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis elegans GN=cyn-9 PE=2 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 3.451e-16
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = -2
Query:  253 SIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVG-SSSGRTNKPVVIADCGQL 516
            SIYG  F DE F  KH+ P +LSMAN GP +N SQFF+ TA     +GKHVVFG+VV+G +VV  I+ +      +    V+I++CG+L
Sbjct:   86 SIYGRYFDDEKFKLKHSRPYLLSMANKGPNSNSSQFFITTAAAPHCNGKHVVFGEVVKGQNVVDYIDNLAVDDKSKPLAKVLISNCGEL 174          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: CYP15_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp15 OS=Rhizopus oryzae GN=cyp15 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.451e-16
Identity = 45/82 (54.88%), Postives = 55/82 (67.07%), Query Frame = -2
Query:  277 ESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPV 519
            ESI+G  F DE   + +H  P  +SMANAGP TNGSQFF+  A T WLD KH VFG+V  GMDVV +IE   +   +TNKP+
Sbjct:  540 ESIWGDDFEDEFSREFRHDRPYTVSMANAGPNTNGSQFFITVAPTTWLDNKHSVFGRVTAGMDVVHSIE--SAKVDKTNKPL 619          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: PPWD1_PONAB (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Pongo abelii GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15
Identity = 42/81 (51.85%), Postives = 54/81 (66.67%), Query Frame = -2
Query:  280 ESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP 519
            ESI+G +F DE +   +H  P  LSMANAG  TNGSQFF+    T WLD KH VFG+V +GM+VV+ I  V   + +T+KP
Sbjct:  555 ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNV-KVNPKTDKP 634          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: PPWD1_HUMAN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Homo sapiens GN=PPWD1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15
Identity = 42/81 (51.85%), Postives = 54/81 (66.67%), Query Frame = -2
Query:  280 ESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP 519
            ESI+G +F DE +   +H  P  LSMANAG  TNGSQFF+    T WLD KH VFG+V +GM+VV+ I  V   + +T+KP
Sbjct:  555 ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNV-KVNPKTDKP 634          
The following BLAST results are available for this feature:
BLAST of CF834917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
PPIB_TREPA6.954e-1765.63Probable peptidyl-prolyl cis-trans isomerase OS=Tr... [more]
CYPE_DICDI1.186e-1652.44Peptidyl-prolyl cis-trans isomerase cypE OS=Dictyo... [more]
PPIL1_ASPNG1.549e-1658.11Peptidyl-prolyl cis-trans isomerase-like 1 OS=Aspe... [more]
PPIL1_MOUSE3.451e-1656.76Peptidyl-prolyl cis-trans isomerase-like 1 OS=Mus ... [more]
PPIL1_HUMAN3.451e-1656.76Peptidyl-prolyl cis-trans isomerase-like 1 OS=Homo... [more]
PPIL1_BOVIN3.451e-1656.76Peptidyl-prolyl cis-trans isomerase-like 1 OS=Bos ... [more]
CYP9_CAEEL3.451e-1648.31Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
CYP15_RHIOR3.451e-1654.88Peptidyl-prolyl cis-trans isomerase cyp15 OS=Rhizo... [more]
PPWD1_PONAB4.983e-1551.85Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_HUMAN4.983e-1551.85Peptidylprolyl isomerase domain and WD repeat-cont... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06F14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834917 ID=CF834917; Name=CF834917; organism=Citrus sinensis; type=EST; length=571bp
TTTTTTTTTTTATAACAAGACAAGCCCTATCTTATTTAAAAAGCCATTTC
ATAGAAAGACATAAAAAACAGTTCATCAAGAACCCCCTCCGGAGACCCGA
TCCAACCCGAACAAGTAACATAGCAGGAAAATTAGATAAAGATTAAAAGT
CCTACAGACACGGCCACATAATAATAGATAACATAATCACCATCACGATC
GCGATCAGACGGCTCGTGATGATGGCGATCATTATCATGATCAAATCTAA
GACAATTGACCGCAATCAGCGATCACGACGGGCTTGTTGGTCCTTCCGGA
GCTGGACCCCACTTTCTCGATGGCCTTGACGACGTCCATTCCTTCGACGA
CTTGACCGAACACAACGTGCTTCCCATCGAGCCACTCGGTCTTGGCCGTA
CAGACGAAGAACTGAGATCCGTTGGTTCCGGGTCCGGCATTCGCCATGGA
GAGGATTCCGGGGCCGGTGTGCTTCTTCACGAAGTTCTCATCGGCGAATT
TTGAGCCGTAGATTGATTCGCCTCCGGTTCCGTTTCCGGCGGTGAAGTCT
CCCCCCTGGCACATGAATCCG
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