CF834917

Overview
NameCF834917
Unique NameCF834917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:261..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: PPIA_MYCBO (Probable peptidyl-prolyl cis-trans isomerase A OS=Mycobacterium bovis GN=ppiA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.559e-11
Identity = 40/83 (48.19%), Postives = 53/83 (63.86%), Query Frame = -2
Query:  271 GSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV--EGMDVVKAIEKVGS-SSGRTNKPVVI 507
            G KFADE   + +   P +L+MANAGPGTNGSQFF+   KT  L+ +H +FG+V+  E   VV+AI K  +  + R   PVVI
Sbjct:   94 GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 176          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: PPIL3_MOUSE (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Mus musculus GN=Ppil3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = -2
Query:  310 SIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKV 516
            SI+  KF DE +   KH   G++SMAN GP TNGSQFF+   K   LD K+ VFG+V++G++ +  +EK+
Sbjct:   65 SIWAKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKL 134          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: PPIL3_CRYNE (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Cryptococcus neoformans GN=CYP10 PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = -2
Query:  313 ESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEK 519
            +SI+G  F+DE     +    G+++MANAGP TN SQFF+  AK   LDGK+ +FG+V++GM+ + ++EK
Sbjct:   64 QSIWGRPFSDEIRQTLRFNNRGMVAMANAGPDTNKSQFFITYAKQPSLDGKYSIFGKVIDGMETLDSMEK 133          
The following BLAST results are available for this feature:
BLAST of CF834917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
PPIA_MYCBO2.559e-1148.19Probable peptidyl-prolyl cis-trans isomerase A OS=... [more]
PPIL3_MOUSE5.702e-1147.14Peptidyl-prolyl cis-trans isomerase-like 3 OS=Mus ... [more]
PPIL3_CRYNE9.726e-1145.71Peptidyl-prolyl cis-trans isomerase-like 3 OS=Cryp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06F14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834917 ID=CF834917; Name=CF834917; organism=Citrus sinensis; type=EST; length=571bp
TTTTTTTTTTTATAACAAGACAAGCCCTATCTTATTTAAAAAGCCATTTC
ATAGAAAGACATAAAAAACAGTTCATCAAGAACCCCCTCCGGAGACCCGA
TCCAACCCGAACAAGTAACATAGCAGGAAAATTAGATAAAGATTAAAAGT
CCTACAGACACGGCCACATAATAATAGATAACATAATCACCATCACGATC
GCGATCAGACGGCTCGTGATGATGGCGATCATTATCATGATCAAATCTAA
GACAATTGACCGCAATCAGCGATCACGACGGGCTTGTTGGTCCTTCCGGA
GCTGGACCCCACTTTCTCGATGGCCTTGACGACGTCCATTCCTTCGACGA
CTTGACCGAACACAACGTGCTTCCCATCGAGCCACTCGGTCTTGGCCGTA
CAGACGAAGAACTGAGATCCGTTGGTTCCGGGTCCGGCATTCGCCATGGA
GAGGATTCCGGGGCCGGTGTGCTTCTTCACGAAGTTCTCATCGGCGAATT
TTGAGCCGTAGATTGATTCGCCTCCGGTTCCGTTTCCGGCGGTGAAGTCT
CCCCCCTGGCACATGAATCCG
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