CF834917

Overview
NameCF834917
Unique NameCF834917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:261..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: CYP2_CAEEL (Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhabditis elegans GN=cyn-2 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.379e-33
Identity = 68/105 (64.76%), Postives = 77/105 (73.33%), Query Frame = -2
Query:  253 FMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 567
            FM Q           GESI+G KF DENF +KHTGPG+LSMAN G  TNGSQFF+CT KT WLDGKHVVFG+V+EGMDVVKAIE  GS  G  + P VIADCG++
Sbjct:   67 FMIQGGDFTEGNGTGGESIHGEKFDDENFKEKHTGPGVLSMANCGANTNGSQFFLCTVKTTWLDGKHVVFGKVIEGMDVVKAIESKGSEDGAPSAPCVIADCGEM 171          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: PPIA_DROME (Peptidyl-prolyl cis-trans isomerase OS=Drosophila melanogaster GN=Cyp1 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 6.921e-33
Identity = 67/105 (63.81%), Postives = 78/105 (74.29%), Query Frame = -2
Query:  253 FMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 567
            FMCQ           G+SIYG+KF DENF  KHTG GILSMANAG  TNGSQFF+CT KT WLD KHVVFG+VVEG+DVVK IE  GS SG+T+K +++A+ G L
Sbjct:  123 FMCQGGDFTNHNGTGGKSIYGNKFPDENFELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHVVFGEVVEGLDVVKKIESYGSQSGKTSKKIIVANSGSL 227          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: PAL4A_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4A OS=Homo sapiens GN=PPIAL4A PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.921e-33
Identity = 64/105 (60.95%), Postives = 78/105 (74.29%), Query Frame = -2
Query:  256 GFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 570
            GFMCQ            +SIYG KF DEN ++KHTG GILSMANAGP TNGSQFF+CTAKTEWLDGKHV FG+V E +++V+A+E  G  + +T+K + IADCGQ
Sbjct:   59 GFMCQGGDFTHPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: CYP1_CAEEL (Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhabditis elegans GN=cyn-1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.921e-33
Identity = 70/105 (66.67%), Postives = 75/105 (71.43%), Query Frame = -2
Query:  253 FMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 567
            FM Q           GESIYG+KF DENF  KHTGPG LSMANAGP TNGSQFF+CT  T WLDG HVVFGQV +GM VVK IEK+GS SG   K V IADCG+L
Sbjct:   85 FMIQGGDFTRHNGTGGESIYGNKFKDENFDLKHTGPGCLSMANAGPNTNGSQFFICTVDTPWLDGGHVVFGQVTDGMSVVKKIEKMGSRSGAPAKTVTIADCGEL 189          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: PAL4B_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4B OS=Homo sapiens GN=PPIAL4B PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.630e-32
Identity = 63/105 (60.00%), Postives = 77/105 (73.33%), Query Frame = -2
Query:  256 GFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 570
            GFMCQ            +SIYG KF DEN ++KHTG GILSMANAGP TNGSQFF+C AKTEWLDGKHV FG+V E +++V+A+E  G  + +T+K + IADCGQ
Sbjct:   59 GFMCQGGDFTRHNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: PPIE_HUMAN (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.653e-32
Identity = 63/104 (60.58%), Postives = 77/104 (74.04%), Query Frame = -2
Query:  256 FMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 567
            FMCQ           G+SIYG KF DENF+ KHTGPG+LSMAN+GP TNGSQFF+   KT+WLDGKHVVFG+V EG+DV++ IE  GS  G+  + V+IADCG+
Sbjct:  196 FMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 299          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: PPIF_BOVIN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 9.995e-32
Identity = 65/95 (68.42%), Postives = 72/95 (75.79%), Query Frame = -2
Query:  283 FMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK 567
            FMCQ           G+SIYGS+F DENF  KH GPG+LSMANAGP TNGSQFF+CT KT+WLDGKHVVFG V EGMDVVK IE  GS SG+T+K
Sbjct:  103 FMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSK 197          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: PPIE_PONAB (Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.995e-32
Identity = 63/104 (60.58%), Postives = 77/104 (74.04%), Query Frame = -2
Query:  256 FMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 567
            FMCQ           G+SIYG KF DENF+ KHTGPG+LSMAN+GP TNGSQFF+   KT+WLDGKHVVFG+V EG+DV++ IE  GS  G+  + V+IADCG+
Sbjct:  196 FMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEARGSKDGKPKQKVIIADCGE 299          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: PPIE_SCHMA (Peptidyl-prolyl cis-trans isomerase E OS=Schistosoma mansoni PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.305e-31
Identity = 63/105 (60.00%), Postives = 78/105 (74.29%), Query Frame = -2
Query:  253 FMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 567
            FMCQ           G+SIYG KF DENF  +H G G+LSMAN+GP TNGSQFF+CT K +WLDGKHVVFG+VV+G +VVK +E VGS SG+  +PV+I+ CG+L
Sbjct:  168 FMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 272          
BLAST of CF834917 vs. ExPASy Swiss-Prot
Match: PPIE_MOUSE (Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.305e-31
Identity = 63/104 (60.58%), Postives = 77/104 (74.04%), Query Frame = -2
Query:  256 FMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 567
            FMCQ           G+SIYG KF DENF+ KHTGPG+LSMAN+GP TNGSQFF+   KT+WLDGKHVVFG+V EG+DV++ IE  GS  G+  + V+IADCG+
Sbjct:  196 FMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVMIADCGE 299          
The following BLAST results are available for this feature:
BLAST of CF834917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
CYP2_CAEEL2.379e-3364.76Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhab... [more]
PPIA_DROME6.921e-3363.81Peptidyl-prolyl cis-trans isomerase OS=Drosophila ... [more]
PAL4A_HUMAN6.921e-3360.95Peptidylprolyl cis-trans isomerase A-like 4A OS=Ho... [more]
CYP1_CAEEL6.921e-3366.67Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhab... [more]
PAL4B_HUMAN2.630e-3260.00Peptidylprolyl cis-trans isomerase A-like 4B OS=Ho... [more]
PPIE_HUMAN7.653e-3260.58Peptidyl-prolyl cis-trans isomerase E OS=Homo sapi... [more]
PPIF_BOVIN9.995e-3268.42Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIE_PONAB9.995e-3260.58Peptidyl-prolyl cis-trans isomerase E OS=Pongo abe... [more]
PPIE_SCHMA1.305e-3160.00Peptidyl-prolyl cis-trans isomerase E OS=Schistoso... [more]
PPIE_MOUSE1.305e-3160.58Peptidyl-prolyl cis-trans isomerase E OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06F14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834917 ID=CF834917; Name=CF834917; organism=Citrus sinensis; type=EST; length=571bp
TTTTTTTTTTTATAACAAGACAAGCCCTATCTTATTTAAAAAGCCATTTC
ATAGAAAGACATAAAAAACAGTTCATCAAGAACCCCCTCCGGAGACCCGA
TCCAACCCGAACAAGTAACATAGCAGGAAAATTAGATAAAGATTAAAAGT
CCTACAGACACGGCCACATAATAATAGATAACATAATCACCATCACGATC
GCGATCAGACGGCTCGTGATGATGGCGATCATTATCATGATCAAATCTAA
GACAATTGACCGCAATCAGCGATCACGACGGGCTTGTTGGTCCTTCCGGA
GCTGGACCCCACTTTCTCGATGGCCTTGACGACGTCCATTCCTTCGACGA
CTTGACCGAACACAACGTGCTTCCCATCGAGCCACTCGGTCTTGGCCGTA
CAGACGAAGAACTGAGATCCGTTGGTTCCGGGTCCGGCATTCGCCATGGA
GAGGATTCCGGGGCCGGTGTGCTTCTTCACGAAGTTCTCATCGGCGAATT
TTGAGCCGTAGATTGATTCGCCTCCGGTTCCGTTTCCGGCGGTGAAGTCT
CCCCCCTGGCACATGAATCCG
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