CF834923

Overview
NameCF834923
Unique NameCF834923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834923_ssr130 microsatellite CF834923_ssr130:130..144. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1088 contig Csv1_Contig1088:346..1078. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834923 vs. ExPASy Swiss-Prot
Match: RL27_CAEEL (60S ribosomal protein L27 OS=Caenorhabditis elegans GN=rpl-27 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.016e-34
Identity = 68/136 (50.00%), Postives = 99/136 (72.79%), Query Frame = -2
Query:  181 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 585
            M K +KP K V++L+G+YAGRKAV+VK  D+G  +R Y H ++AGI +YP KV +    KK  K++++K F+K+V+Y HL+PTRY++DV   K  ++ ++L++  KK  A  E K + EER+KTGKN+WFFTKLRF
Sbjct:    1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136          
BLAST of CF834923 vs. ExPASy Swiss-Prot
Match: RL27A_SCHPO (60S ribosomal protein L27-A OS=Schizosaccharomyces pombe GN=rpl27a PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.016e-34
Identity = 65/136 (47.79%), Postives = 100/136 (73.53%), Query Frame = -2
Query:  181 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVD-LKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 585
            MVK LKP K  ++ +GR+AG+K VI+++ D G++   +GH +VAG+++YP KV +   AK+ A++SRVK F+K+VNY HLMPTRY L++D LK +++AD+ +   ++  A K  KK  EE++++GK+ WFFT LRF
Sbjct:    1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEEKYQSGKSAWFFTPLRF 136          
BLAST of CF834923 vs. ExPASy Swiss-Prot
Match: RL27_CANAL (60S ribosomal protein L27 OS=Candida albicans GN=RPL27 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.865e-34
Identity = 69/136 (50.74%), Postives = 96/136 (70.59%), Query Frame = -2
Query:  181 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVD-LKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 585
            M KF+K  K  I+++GRYAG+K VIVK  D+GT+   + H +VAGI++ P KV +K  AKK  K+++VK FVKLVNY HLMPTRY+LDV+  K  V++++L+   ++  A K  KK  EE+ + GKN+WFF KL F
Sbjct:    1 MAKFIKSGKVAIVVRGRYAGKKVVIVKPHDEGTKSHPFPHAIVAGIERAPLKVTKKMDAKKVTKRTKVKPFVKLVNYNHLMPTRYSLDVESFKSAVTSEALEEPSQREEAKKVVKKAFEEKHQAGKNKWFFQKLHF 136          
BLAST of CF834923 vs. ExPASy Swiss-Prot
Match: RL27B_SCHPO (60S ribosomal protein L27-B OS=Schizosaccharomyces pombe GN=rpl27b PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.965e-33
Identity = 64/136 (47.06%), Postives = 96/136 (70.59%), Query Frame = -2
Query:  181 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVD-LKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 585
            MVK LKP K  ++ +GR+AG+K VI+++ D G++   +GH +VAG+++YP KV +   AK+ AK+SRVK F+K++NY HLMPTRY L++D LK +V+  +     ++  A K  K   EE+++TGK+ WFFT LRF
Sbjct:    1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEEKYQTGKSAWFFTPLRF 136          
BLAST of CF834923 vs. ExPASy Swiss-Prot
Match: RL27_DICDI (60S ribosomal protein L27 OS=Dictyostelium discoideum GN=rpl27 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.170e-32
Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = -2
Query:  181 KFLKPNKAVILLQGRYAGRKAVIVKSFDDGT--RERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLD-------VDLKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 579
            KF+KP + VILL G+YAGRKAV++K+FDD T  + R YGHCLVAGI KYP  ++R  S K   K++ +++FVK+VNY H+MPTRY  +         LK+ V+ +S Q   K+       KK  E + K GK++WFF+KLRF
Sbjct:    4 KFIKPGRLVILLNGKYAGRKAVVIKTFDDATASKSRPYGHCLVAGIDKYPRSIVRSMSRKTILKRTAIRSFVKVVNYNHIMPTRYNFEGRDESAFTGLKNTVTVESSQVA-KRAHTRLAVKKIFEAKHKAGKSKWFFSKLRF 144          
The following BLAST results are available for this feature:
BLAST of CF834923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL27_CAEEL2.016e-3450.0060S ribosomal protein L27 OS=Caenorhabditis elegan... [more]
RL27A_SCHPO2.016e-3447.7960S ribosomal protein L27-A OS=Schizosaccharomyces... [more]
RL27_CANAL5.865e-3450.7460S ribosomal protein L27 OS=Candida albicans GN=R... [more]
RL27B_SCHPO4.965e-3347.0660S ribosomal protein L27-B OS=Schizosaccharomyces... [more]
RL27_DICDI7.170e-3248.5960S ribosomal protein L27 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06F18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06F18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834923 ID=CF834923; Name=CF834923; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTTTTTTTTTTAAAACCCAATAATATCACATAAAAATAGTACCAT
ATCCAGAAAAAATTAAGTTCACAAAACACTACATAAATCTCAAAATTCGC
ACTTTAACAACTAAAGCGTTTTCAATAACACAAAACAAAACAAAACGACA
AGTTGCTTTCTTCCTTTGGTTAAAAATCTAAAACCTGAGCTTAGTAAAGA
ACCAACGATTCTTGCCAGTCTTAAACCTCTCCTCGAGGCGCTTCTTGGTC
TCCTTGCAAGCGGTCACCTTCTTGTCCTTGCTCTGGAGGGAATCGGCCGA
CACGACGTCCTTCAAATCGACGTCGAGAGTGTAGCGCGTGGGCATCAGGT
GCTGGTAGTTGACCAACTTGACGAAGGCCTTGACGCGCGACTTCTTCGCT
GTCTTCTTCGCCGAGTCCTTGCGGATGACCTTGCCCGGGTACTTCTTTAT
CCCCGCTACCAAACAGTGCCCGTACGCCCTCTCGCGGGTCCCGTCGTCGA
ACGACTTCACGATCACCGCCTTCCGGCCGGCGTAACGGCCCTGAAGAAGG
ATCACGGCCTTGTTTGGTTTCAGAAACTTCACCATTTCAACTCTCGCTCC
TCGCGCACCCGCGGCTCTCCATTTGTCAAAACCAGGTGTTTCAACAGGGG
TTGTTCCTACTGCTGCTGCAGCTGCTGTATCTCTTATGTCAGATGGTGGA
GGCACAACTTTGTAACCACTTTAGTCTTTCTGA
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