CF834927

Overview
NameCF834927
Unique NameCF834927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2799 contig Csv1_Contig2799:108..826. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834927 vs. ExPASy Swiss-Prot
Match: IF5A2_HUMAN (Eukaryotic translation initiation factor 5A-2 OS=Homo sapiens GN=EIF5A2 PE=1 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 1.481e-42
Identity = 83/142 (58.45%), Postives = 109/142 (76.76%), Query Frame = -3
Query:  280 DAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 705
            DAGAS TYP Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE G  ++DL+LP  E L  +++  +  G+D+ ++VM +M EE   A+K
Sbjct:   11 DAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICI-QDGYLSLLTETGEVREDLKLPEGE-LGKEIEGKYNAGEDVQVSVMCAMSEEYAVAIK 150          
BLAST of CF834927 vs. ExPASy Swiss-Prot
Match: IF5A2_CHICK (Eukaryotic translation initiation factor 5A-2 OS=Gallus gallus GN=EIF5A2 PE=1 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 3.299e-42
Identity = 82/142 (57.75%), Postives = 110/142 (77.46%), Query Frame = -3
Query:  280 DAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 705
            DAGAS TYP Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE+G  ++DL+LP  + L  +++  F   +D+ ++V+S+M EE   A+K
Sbjct:   11 DAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPNIKRNDYQLIGI-QDGYLSLLTESGEVREDLKLPEGD-LGKEIEGKFNANEDVQISVISAMNEECAVAIK 150          
BLAST of CF834927 vs. ExPASy Swiss-Prot
Match: IF5A1_RABIT (Eukaryotic translation initiation factor 5A-1 OS=Oryctolagus cuniculus GN=EIF5A PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.253e-41
Identity = 79/142 (55.63%), Postives = 111/142 (78.17%), Query Frame = -3
Query:  280 DAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 705
            DAGAS T+P Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP  + L  +++  +  G+++++TV+S+M EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLPEGD-LGKEIEQKYDSGEEILITVLSAMTEEAAVAIK 150          
BLAST of CF834927 vs. ExPASy Swiss-Prot
Match: IF5A1_RAT (Eukaryotic translation initiation factor 5A-1 OS=Rattus norvegicus GN=Eif5a PE=1 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 3.647e-41
Identity = 79/142 (55.63%), Postives = 111/142 (78.17%), Query Frame = -3
Query:  280 DAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 705
            DAGAS T+P Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP  + L  +++  +  G+++++TV+S+M EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLPEGD-LGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CF834927 vs. ExPASy Swiss-Prot
Match: IF5A1_MOUSE (Eukaryotic translation initiation factor 5A-1 OS=Mus musculus GN=Eif5a PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.647e-41
Identity = 79/142 (55.63%), Postives = 111/142 (78.17%), Query Frame = -3
Query:  280 DAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 705
            DAGAS T+P Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP  + L  +++  +  G+++++TV+S+M EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLPEGD-LGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CF834927 vs. ExPASy Swiss-Prot
Match: IF5A1_HUMAN (Eukaryotic translation initiation factor 5A-1 OS=Homo sapiens GN=EIF5A PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.647e-41
Identity = 79/142 (55.63%), Postives = 111/142 (78.17%), Query Frame = -3
Query:  280 DAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 705
            DAGAS T+P Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP  + L  +++  +  G+++++TV+S+M EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLPEGD-LGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CF834927 vs. ExPASy Swiss-Prot
Match: IF5A1_BOVIN (Eukaryotic translation initiation factor 5A-1 OS=Bos taurus GN=EIF5A PE=2 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 3.647e-41
Identity = 79/142 (55.63%), Postives = 111/142 (78.17%), Query Frame = -3
Query:  280 DAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 705
            DAGAS T+P Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP  + L  +++  +  G+++++TV+S+M EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLPEGD-LGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CF834927 vs. ExPASy Swiss-Prot
Match: IF5AL_HUMAN (Eukaryotic translation initiation factor 5A-1-like OS=Homo sapiens GN=EIF5AL1 PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.614e-39
Identity = 77/142 (54.23%), Postives = 108/142 (76.06%), Query Frame = -3
Query:  280 DAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 705
            DAGAS T+P Q   +RKNG++V+K  PCK+VE+S SKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G   +DLRLP  + L  +++  +  G+++++TV+S+M EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGWPCKIVEMSASKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVPEDLRLPEGD-LGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CF834927 vs. ExPASy Swiss-Prot
Match: IF5A_NEUCR (Eukaryotic translation initiation factor 5A OS=Neurospora crassa GN=tif-51 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 9.932e-39
Identity = 80/147 (54.42%), Postives = 104/147 (70.75%), Query Frame = -3
Query:  265 DAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 705
            DAGAS TYP Q   +RK G++VIK+RPCK+V++STSKTGKHGHAK H V IDIF+GKKLED+ PS+HN DVP+V RTDYQ   I ED F+ L+  NG  K D+++P  E L  +++    EGKD  + V ++MGEE    +K+   K
Sbjct:   18 DAGASATYPMQCSALRKGGHVVIKNRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLCPSTHNMDVPNVKRTDYQFSYIDED-FLVLIDSNGEEKRDVKMPEGE-LAKRIEKLEEEGKDFFVGVQTAMGEEAAIDVKEASNK 162          
BLAST of CF834927 vs. ExPASy Swiss-Prot
Match: IF5A1_CHICK (Eukaryotic translation initiation factor 5A-1 OS=Gallus gallus GN=EIF5A1 PE=1 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.873e-37
Identity = 73/126 (57.94%), Postives = 99/126 (78.57%), Query Frame = -3
Query:  328 DAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLV 705
            DAGAS T+P Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DGF+SLL ++G  ++DLRLP  E L  +++  +  G++++
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRCDFQLIGI-QDGFLSLLQDSGEVREDLRLPEGE-LGREIEQKYDCGEEII 134          
The following BLAST results are available for this feature:
BLAST of CF834927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
IF5A2_HUMAN1.481e-4258.45Eukaryotic translation initiation factor 5A-2 OS=H... [more]
IF5A2_CHICK3.299e-4257.75Eukaryotic translation initiation factor 5A-2 OS=G... [more]
IF5A1_RABIT1.253e-4155.63Eukaryotic translation initiation factor 5A-1 OS=O... [more]
IF5A1_RAT3.647e-4155.63Eukaryotic translation initiation factor 5A-1 OS=R... [more]
IF5A1_MOUSE3.647e-4155.63Eukaryotic translation initiation factor 5A-1 OS=M... [more]
IF5A1_HUMAN3.647e-4155.63Eukaryotic translation initiation factor 5A-1 OS=H... [more]
IF5A1_BOVIN3.647e-4155.63Eukaryotic translation initiation factor 5A-1 OS=B... [more]
IF5AL_HUMAN2.614e-3954.23Eukaryotic translation initiation factor 5A-1-like... [more]
IF5A_NEUCR9.932e-3954.42Eukaryotic translation initiation factor 5A OS=Neu... [more]
IF5A1_CHICK1.873e-3757.94Eukaryotic translation initiation factor 5A-1 OS=G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06F20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06F20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834927 ID=CF834927; Name=CF834927; organism=Citrus sinensis; type=EST; length=719bp
TTTTTTTTTTTTTCAATAACACCCCAATCATATATAAATAACACCCATGA
TTTCTTTCTAACATTATAATTCATTAGAGAAATTGCACTCCATAAATTTT
TTAGCCGCCAATCAAAAGAACTACATATTCCAGGCAGCTTGCAATTCTCA
CCACAAAACACAGACGCTACAAATATTAAAGGCAAACTCTAGATGATTAA
AATATTTTTCCAAAAAACAGATGCAACCAGACACAGAAGATAATCACATA
TCGCGCAACTACGACTTTGGGCCAATATCCTTGAGGGCACAGATCTGCTC
CTCGCCCATTGAAGACATGACAGTCAAAACCAAGTCCTTCCCCTCAGCAA
AACCGTCCTTGAGCTGGGTCAGCAGAGTCTCATCGGTTGGGAGCCTCAGA
TCATCCTTGGTGTTCCCATTTTCAGTCAGCAAACTCACAAATCCATCCTC
AGAAATATCAATCAACTGATAGTCGGTACGGTTGACATGGGGAACATCAC
AGTTATGAGAAGAGGGGACAATATCTTCCAGCTTCTTTCCACTGAAGATA
TCAATTCCAACAAAGTGGCACTTAGCATGACCGTGCTTTCCAGTCTTGGA
GGTGGAGACTTCCACAACCTTGCAGGGACGGCTTTTGATGACGATGTAGC
CGTTCTTACGGATGGTACCAGCTTGCTGTGGGTAAGTCTTGGAGGCTCCG
GCATCGGCCTTTGACTCGA
back to top