CF834927

Overview
NameCF834927
Unique NameCF834927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2799 contig Csv1_Contig2799:108..826. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834927 vs. ExPASy Swiss-Prot
Match: IF5A_DICDI (Eukaryotic translation initiation factor 5A OS=Dictyostelium discoideum GN=eif5a PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.342e-35
Identity = 70/145 (48.28%), Postives = 109/145 (75.17%), Query Frame = -3
Query:  280 SKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 714
            ++A +GAS T+P Q   +RKNG++VIK  PCK+V++STSKTGKHGHAK +   IDIF+GKK E+I PS+HN DVP+V+R +Y ++D+ +DG++SLL   G  K+DL LP D+ +  ++     EGK+ +++V+S++G+E + ++K
Sbjct:   13 AQAGSGASLTFPIQCSALRKNGFVVIKGFPCKIVDMSTSKTGKHGHAKVNITAIDIFTGKKYEEICPSTHNIDVPNVSRKEYTVMDV-QDGYLSLLDAGGEVKEDLALPEDD-IGKEITQMLKEGKEPLVSVISALGKEGVVSVK 155          
BLAST of CF834927 vs. ExPASy Swiss-Prot
Match: IF5A2_CAEEL (Eukaryotic translation initiation factor 5A-2 OS=Caenorhabditis elegans GN=iff-2 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.306e-34
Identity = 77/144 (53.47%), Postives = 104/144 (72.22%), Query Frame = -3
Query:  280 DAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLL-TENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLT-VMSSMGEEQICALK 705
            D+GA+ T+P+Q   +RKN +++IK RPCK+VE+STSKTGKHGHAK H V IDIF+ KKLEDI PS+HN DVP V R +Y L+ I +DG+ SL+  E+   KDDL+LP D  L  Q++D + + +  VL  V+S++GEE I   K
Sbjct:   15 DSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLP-DTELGQQIRDAYEKDEGSVLVQVVSAIGEEAILGWK 156          
BLAST of CF834927 vs. ExPASy Swiss-Prot
Match: IF5A1_CAEEL (Eukaryotic translation initiation factor 5A-1 OS=Caenorhabditis elegans GN=iff-1 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.894e-32
Identity = 73/145 (50.34%), Postives = 102/145 (70.34%), Query Frame = -3
Query:  280 ADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLL-TENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLT-VMSSMGEEQICALK 708
            A++GA+ T+P+Q   +RKN +++I+ RPCK+VE+STSKTGKHGHAK H V IDIF+ KKLEDI PS+HN DVP V R +Y L+ I EDGF SL+  E+   KDDL++P  + L   +++   + +  VL  V+++ GEE I   K
Sbjct:   14 AESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGD-LGNTIREALEKDEGSVLVQVVAACGEEAILGYK 156          
BLAST of CF834927 vs. ExPASy Swiss-Prot
Match: IF5A_THEPD (Translation initiation factor 5A OS=Thermofilum pendens (strain Hrk 5) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.863e-15
Identity = 42/112 (37.50%), Postives = 63/112 (56.25%), Query Frame = -3
Query:  352 TYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDG 687
            T P++AG I+   +IVI   PCKVVEV  SKTGKHG AK   VGI  F G K   +VP+    +VP + +   Q++    D  V L+     +  ++ +P +E + ++L +G
Sbjct:    3 TRPEEAGNIKVGSFIVIDGEPCKVVEVEKSKTGKHGSAKARIVGIGFFDGGKRSIVVPTDARVEVPIIKKFTAQVVAFVGDN-VQLMNLEDYSTFEIPMPQEEEIKSKLSEG 113          
BLAST of CF834927 vs. ExPASy Swiss-Prot
Match: YE034_YEAST (Putative uncharacterized protein YEL034C-A OS=Saccharomyces cerevisiae GN=YEL034C-A PE=5 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.463e-13
Identity = 47/130 (36.15%), Postives = 71/130 (54.62%), Query Frame = 1
Query:  271 ANILEGTDLLLAH*RHDSQNQVLPLSKTVLELGQQSLIGWEPQIILGVPIFSQQTHKSILRNINQLIVGTVDMGNITVMRRGDNIFQLLSTEDINSNKVALSMTVLSSLGGGDFHNLAGTAFDDDVAVLT 660
            ++ LEG      H   D  +QVL   K+ L+   Q    W   IIL V +   Q  ++++ N+ QL+  ++D  N  V+ R   IFQLL++EDIN N++  S+TVL+SL  G   NL  +  DD+  VL+
Sbjct:   27 SSFLEGDGGFFTHSGDDGNHQVLTFIKSSLQTVTQFTF-WSLDIILSVTVHVHQRQETVI-NVQQLVFVSLDNWNFHVVSRWRQIFQLLTSEDINGNQMDFSVTVLTSLRSGHVDNLTWSTLDDNETVLS 154          
BLAST of CF834927 vs. ExPASy Swiss-Prot
Match: IF5A_SCHMA (Eukaryotic translation initiation factor 5A (Fragment) OS=Schistosoma mansoni PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.463e-13
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = -3
Query:  556 DAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVG 705
            D GASKT P+Q   +RK G++V+K RPCK+VE+STSKTGKHG AK H VG
Sbjct:    3 DFGASKTLPKQCSALRKGGHVVMKDRPCKIVEMSTSKTGKHGSAKVHLVG 52          
BLAST of CF834927 vs. ExPASy Swiss-Prot
Match: IF5A_IGNH4 (Translation initiation factor 5A OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 41/114 (35.96%), Postives = 63/114 (55.26%), Query Frame = -3
Query:  352 SKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDG 693
            SKTY    G ++   +I+I   PCK+VE+S +KTGKHG AK H V I + SG K   + P     +VP + +   Q++ I+ D  V L+        ++ LP +E L ++L+ G
Sbjct:    2 SKTYAT-LGELKPGNFIMIDGEPCKIVEMSKAKTGKHGSAKAHVVAISLISGAKKTFVAPVDTRVEVPIIEKRVGQVLAITGDS-VQLMDMETYDTFEVPLPEEEELKSRLEPG 113          
BLAST of CF834927 vs. ExPASy Swiss-Prot
Match: IF5A_CALMQ (Translation initiation factor 5A OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = -3
Query:  445 TYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISED 687
            T    AG I++  YI+I + PC+VVEV  SKTGKHG AK   VGI +  G K   +VP+    +VP + +   Q+I IS D
Sbjct:    3 TRTASAGDIKEGSYIMIDNMPCRVVEVEKSKTGKHGSAKARIVGIGVIDGVKRTIVVPTDAAVEVPVIEKFTAQVISISGD 83          
BLAST of CF834927 vs. ExPASy Swiss-Prot
Match: IF5A_METKA (Translation initiation factor 5A OS=Methanopyrus kandleri GN=eif5a PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12
Identity = 42/129 (32.56%), Postives = 65/129 (50.39%), Query Frame = -3
Query:  277 IRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKD 663
            ++K  YI+I   PCK+VE +TS  GKHG AK   V + +F GKK     P     DVP + R   Q++    D  V L+        +++ P DE L +QL+ G       ++  M + G+ +I  +K+
Sbjct:   13 LKKGKYIMIDDEPCKIVEYTTSSPGKHGSAKARIVAVGLFDGKKRTLTKPVDAKVDVPVIERKTAQVVSDMGD-TVQLMDMETYETFEVQKPEDEELASQLEPG------TMVEYMEAAGKRKIVGIKE 134          
BLAST of CF834927 vs. ExPASy Swiss-Prot
Match: IF5A_SULTO (Translation initiation factor 5A OS=Sulfolobus tokodaii GN=eif5a PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.924e-12
Identity = 36/106 (33.96%), Postives = 59/106 (55.66%), Query Frame = -3
Query:  352 GTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDG 669
            G ++   Y+VI   PC+VVE+S +KTGKHG AK + V I +F+G+K   + P     +VP + +   Q++    D    +  EN  T  D+  PTD  ++ +++ G
Sbjct:    9 GDLKVGNYVVIDGEPCRVVEISKAKTGKHGSAKANIVAIGLFTGQKRTLMAPVDQQVEVPIIEKHIGQILADKGDTITIMDMENYET-FDIEKPTDADIVDKIRPG 113          
The following BLAST results are available for this feature:
BLAST of CF834927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
IF5A_DICDI1.342e-3548.28Eukaryotic translation initiation factor 5A OS=Dic... [more]
IF5A2_CAEEL3.306e-3453.47Eukaryotic translation initiation factor 5A-2 OS=C... [more]
IF5A1_CAEEL6.894e-3250.34Eukaryotic translation initiation factor 5A-1 OS=C... [more]
IF5A_THEPD5.863e-1537.50Translation initiation factor 5A OS=Thermofilum pe... [more]
YE034_YEAST2.463e-1336.15Putative uncharacterized protein YEL034C-A OS=Sacc... [more]
IF5A_SCHMA2.463e-1366.00Eukaryotic translation initiation factor 5A (Fragm... [more]
IF5A_IGNH42.724e-1235.96Translation initiation factor 5A OS=Ignicoccus hos... [more]
IF5A_CALMQ4.646e-1244.44Translation initiation factor 5A OS=Caldivirga maq... [more]
IF5A_METKA6.068e-1232.56Translation initiation factor 5A OS=Methanopyrus k... [more]
IF5A_SULTO7.924e-1233.96Translation initiation factor 5A OS=Sulfolobus tok... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06F20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06F20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834927 ID=CF834927; Name=CF834927; organism=Citrus sinensis; type=EST; length=719bp
TTTTTTTTTTTTTCAATAACACCCCAATCATATATAAATAACACCCATGA
TTTCTTTCTAACATTATAATTCATTAGAGAAATTGCACTCCATAAATTTT
TTAGCCGCCAATCAAAAGAACTACATATTCCAGGCAGCTTGCAATTCTCA
CCACAAAACACAGACGCTACAAATATTAAAGGCAAACTCTAGATGATTAA
AATATTTTTCCAAAAAACAGATGCAACCAGACACAGAAGATAATCACATA
TCGCGCAACTACGACTTTGGGCCAATATCCTTGAGGGCACAGATCTGCTC
CTCGCCCATTGAAGACATGACAGTCAAAACCAAGTCCTTCCCCTCAGCAA
AACCGTCCTTGAGCTGGGTCAGCAGAGTCTCATCGGTTGGGAGCCTCAGA
TCATCCTTGGTGTTCCCATTTTCAGTCAGCAAACTCACAAATCCATCCTC
AGAAATATCAATCAACTGATAGTCGGTACGGTTGACATGGGGAACATCAC
AGTTATGAGAAGAGGGGACAATATCTTCCAGCTTCTTTCCACTGAAGATA
TCAATTCCAACAAAGTGGCACTTAGCATGACCGTGCTTTCCAGTCTTGGA
GGTGGAGACTTCCACAACCTTGCAGGGACGGCTTTTGATGACGATGTAGC
CGTTCTTACGGATGGTACCAGCTTGCTGTGGGTAAGTCTTGGAGGCTCCG
GCATCGGCCTTTGACTCGA
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