CF834928

Overview
NameCF834928
Unique NameCF834928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2799 contig Csv1_Contig2799:33..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834928 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLLC (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 4.222e-81
Identity = 146/159 (91.82%), Postives = 153/159 (96.23%), Query Frame = 3
Query:   54 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 530
            MSDEEH FESKADAGASKTYPQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTDE LL+ +KDGFAEGKDLV++VMS+MGEEQI ALKDIGPK
Sbjct:    1 MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDENLLSLIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159          
BLAST of CF834928 vs. ExPASy Swiss-Prot
Match: IF5A_SENVE (Eukaryotic translation initiation factor 5A OS=Senecio vernalis GN=EIFSV1 PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 7.201e-81
Identity = 144/159 (90.57%), Postives = 153/159 (96.23%), Query Frame = 3
Query:   54 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 530
            MSDEEH FESKADAGASKTYPQQAGTIRK G+IVIK+R CKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDL+LPTD+ LLTQ+KDGF EGKDLV++VMS+MGEEQICALKDIGPK
Sbjct:    1 MSDEEHQFESKADAGASKTYPQQAGTIRKGGHIVIKNRACKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDALLTQIKDGFGEGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of CF834928 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLTU (Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 9.405e-81
Identity = 145/160 (90.62%), Postives = 154/160 (96.25%), Query Frame = 3
Query:   54 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPKS 533
            MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTDE+LL Q+KDGF EGKDLV++VMS+MGEEQI A+KDIG K+
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDESLLKQVKDGFQEGKDLVVSVMSAMGEEQINAIKDIGTKN 160          
BLAST of CF834928 vs. ExPASy Swiss-Prot
Match: IF5A1_MEDSA (Eukaryotic translation initiation factor 5A-1 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 4.668e-80
Identity = 144/161 (89.44%), Postives = 156/161 (96.89%), Query Frame = 3
Query:   54 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDI-VPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPKS 533
            MSDEEH FESKADAGASKTYPQQAGTIRKNGYIVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIF+ KKLE++ VPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDL+LPTD++LLTQ+KDGFAEGKDLV++VMS+MGEEQICALKDIG K+
Sbjct:    1 MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEEVYVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGGKN 161          
BLAST of CF834928 vs. ExPASy Swiss-Prot
Match: IF5A2_SOLLC (Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 6.096e-80
Identity = 143/160 (89.38%), Postives = 153/160 (95.62%), Query Frame = 3
Query:   54 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPKS 533
            MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTDE LL Q+KDGF EGKDLV++VMS+MGEEQI A+KD+G K+
Sbjct:    1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDENLLKQVKDGFQEGKDLVVSVMSAMGEEQINAVKDVGTKN 160          
BLAST of CF834928 vs. ExPASy Swiss-Prot
Match: IF5A_MAIZE (Eukaryotic translation initiation factor 5A OS=Zea mays GN=TIF5A PE=1 SV=2)

HSP 1 Score: 295.049 bits (754), Expect = 3.025e-79
Identity = 140/160 (87.50%), Postives = 153/160 (95.62%), Query Frame = 3
Query:   54 MSD-EEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 530
            MSD EEHHFESKADAGASKTYPQQAGT+RKNG+IVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCD+PHVNRT+YQLIDISEDGFVSLLT +GNTKDDLRLPTDETL+ Q+K+GF  GKDLV+TV S+MGEEQICALKD+GPK
Sbjct:    1 MSDSEEHHFESKADAGASKTYPQQAGTVRKNGFIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDIPHVNRTEYQLIDISEDGFVSLLTSDGNTKDDLRLPTDETLVAQIKEGFESGKDLVVTVQSAMGEEQICALKDVGPK 160          
BLAST of CF834928 vs. ExPASy Swiss-Prot
Match: IF5A1_ARATH (Eukaryotic translation initiation factor 5A-1 OS=Arabidopsis thaliana GN=At1g13950 PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 2.397e-76
Identity = 138/159 (86.79%), Postives = 151/159 (94.97%), Query Frame = 3
Query:   54 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 530
            MSDEEHHFES +DAGASKTYPQQAGTIRKNGYIVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIF+ KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDG+VSLLT+NG+TKDDL+LP D+TLL Q+K GF +GKDLV++VMS+MGEEQI ALKDIGPK
Sbjct:    1 MSDEEHHFES-SDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158          
BLAST of CF834928 vs. ExPASy Swiss-Prot
Match: IF5A3_ARATH (Eukaryotic translation initiation factor 5A-3 OS=Arabidopsis thaliana GN=At1g69410 PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 6.975e-76
Identity = 135/159 (84.91%), Postives = 150/159 (94.34%), Query Frame = 3
Query:   54 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 530
            MSD+EHHFES +DAGASKTYPQQAG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+ KKLEDIVPSSHNCDVPHVNR DYQLIDISEDGFVSLLT+NG+TKDDL+LPTDE LLTQLK+GF EGKD+V++VMS+MGEEQ+CALK++GPK
Sbjct:    1 MSDDEHHFES-SDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKEVGPK 158          
BLAST of CF834928 vs. ExPASy Swiss-Prot
Match: IF5A_DIACA (Eukaryotic translation initiation factor 5A OS=Dianthus caryophyllus PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.899e-73
Identity = 127/156 (81.41%), Postives = 147/156 (94.23%), Query Frame = 3
Query:   54 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDI 521
            MSD++HHFES ADAGASKTYPQQAGTIRK+G+IVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNR DYQL+DI+EDGFVSLLT++G+TKDDL+LP DE L+ Q+K+GF  GKDL+L+VM +MGEEQICA+KD+
Sbjct:    1 MSDDDHHFESSADAGASKTYPQQAGTIRKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRVDYQLLDITEDGFVSLLTDSGDTKDDLKLPADEALVKQMKEGFEAGKDLILSVMCAMGEEQICAVKDV 156          
BLAST of CF834928 vs. ExPASy Swiss-Prot
Match: IF5A2_ARATH (Eukaryotic translation initiation factor 5A-2 OS=Arabidopsis thaliana GN=At1g26630 PE=1 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.707e-69
Identity = 123/157 (78.34%), Postives = 144/157 (91.72%), Query Frame = 3
Query:   54 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIG 524
            MSD+EHHFE+ +++GASKTYPQ AG IRK G+IVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIF+ KKLEDIVPSSHNCDVPHVNR DYQLIDI+EDGFVSLLT++G TKDDL+LPTD+ L  Q++ GF EGKD+V++VMSSMGEEQICA+K++G
Sbjct:    1 MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVG 156          
The following BLAST results are available for this feature:
BLAST of CF834928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
IF5A3_SOLLC4.222e-8191.82Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A_SENVE7.201e-8190.57Eukaryotic translation initiation factor 5A OS=Sen... [more]
IF5A3_SOLTU9.405e-8190.63Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A1_MEDSA4.668e-8089.44Eukaryotic translation initiation factor 5A-1 OS=M... [more]
IF5A2_SOLLC6.096e-8089.38Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A_MAIZE3.025e-7987.50Eukaryotic translation initiation factor 5A OS=Zea... [more]
IF5A1_ARATH2.397e-7686.79Eukaryotic translation initiation factor 5A-1 OS=A... [more]
IF5A3_ARATH6.975e-7684.91Eukaryotic translation initiation factor 5A-3 OS=A... [more]
IF5A_DIACA1.899e-7381.41Eukaryotic translation initiation factor 5A OS=Dia... [more]
IF5A2_ARATH3.707e-6978.34Eukaryotic translation initiation factor 5A-2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06F20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06F20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834928 ID=CF834928; Name=CF834928; organism=Citrus sinensis; type=EST; length=788bp
CAAAATCTCGCTCATTAAATCGGCCGAGTCGGAATCAGTCAGTGCTTAAA
GCCATGTCGGACGAGGAGCATCACTTCGAGTCAAAGGCCGATGCCGGAGC
CTCCAAGACTTACCCACAGCAAGCTGGTACCATCCGTAAGAACGGCTACA
TCGTCATCAAAAGCCGTCCCTGCAAGGTTGTGGAAGTCTCCACCTCCAAG
ACTGGAAAGCACGGTCATGCTAAGTGCCACTTTGTTGGAATTGATATCTT
CAGTGGAAAGAAGCTGGAAGATATTGTCCCCTCTTCTCATAACTGTGATG
TTCCCCATGTCAACCGTACCGACTATCAGTTGATTGATATTTCTGAGGAT
GGATTTGTGAGTTTGCTGACTGAAAATGGGAACACCAAGGATGATCTGAG
GCTCCCAACCGATGAGACTCTGCTGACCCAGCTCAAGGACGGTTTTGCTG
AGGGGAAGGACTTGGTTTTGACTGTCATGTCTTCAATGGGCGAGGAGCAG
ATCTGTGCCCTCAAGGATATTGGCCCAAAGTCGTAGTTGCGCGATATGTG
ATTATCTTCTGTGTCTGGTTGCATCTGTTTTTTGGAAAAATATTTTAATC
ATCTAGAGTTTGCCTTTAATATTTGTAGCGTCTTTGTTTTGTGGTGAGAA
TTGCAAGCTGCCTGGAATATGTAGTTCTTTTGATTGGCGGCTAAAAAATT
TATGGTGTTCAATTTCTCTAATGAATTATAATGTTAGAAAGAAATCGTCT
TTGTTATTTATATATGATTGGGGTGTTATTTGAAAAAA
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