CF834955

Overview
NameCF834955
Unique NameCF834955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYP4_CAEEL (Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhabditis elegans GN=cyn-4 PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 5.893e-12
Identity = 40/86 (46.51%), Postives = 53/86 (61.63%), Query Frame = -1
Query:  290 GGESISG*KFADENFVK--KHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVV 541
            GGESI    F+DE F+    H   G+LSMAN G  T GSQFF+     ++LD KH +FG+LV G D +  IEK+ +  G T+ P+V
Sbjct:  341 GGESIWDKPFSDE-FISGFSHDARGVLSMANKGSNTNGSQFFITFRPCKYLDRKHTIFGRLVGGQDTLTTIEKLETEEG-TDVPMV 424          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIL2_SCHPO (Peptidyl-prolyl cis-trans isomerase cyp8 OS=Schizosaccharomyces pombe GN=cyp8 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 7.697e-12
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = -1
Query:  281 GGESISG*KFADENFVK--KHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNK-PVVIAD 541
            GG+SI G  F DE F    KH   GI+SMAN G  T GSQFF+     + LD KH +FG++V G++V+ A+EKV ++S    K P+ + D
Sbjct:  337 GGQSIWGKPFKDE-FCNPLKHDDRGIISMANRGKNTNGSQFFILYGPAKHLDNKHTIFGRVVGGLNVLDALEKVPTNSNDHPKLPIKLED 425          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIL3_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Rhizopus oryzae GN=cyp4 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.313e-11
Identity = 39/74 (52.70%), Postives = 48/74 (64.86%), Query Frame = -1
Query:  326 GGESISG*KFADE-NFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMD-VVKAIEKV 541
            GG SI G KF DE     KH   GI+SMANSGP T GSQFF+  AK   LD K+ VFG++++G D  +  +EKV
Sbjct:   68 GGNSIWGKKFNDEIRSTLKHNSRGIVSMANSGPNTNGSQFFITYAKHPHLDTKYTVFGKVIDGADSTLDMMEKV 141          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIL3_RAT (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Rattus norvegicus GN=Ppil3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.239e-11
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = -1
Query:  326 GGESISG*KFADE-NFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKV 541
            GG SI G KF DE +   KH   G++SMAN+GP T GSQFF+   K   LD K+ VFG++++G++ +  +EK+
Sbjct:   62 GGSSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKL 134          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIL3_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Homo sapiens GN=PPIL3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.239e-11
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = -1
Query:  326 GGESISG*KFADE-NFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKV 541
            GG SI G KF DE +   KH   G++SMAN+GP T GSQFF+   K   LD K+ VFG++++G++ +  +EK+
Sbjct:   62 GGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKL 134          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIL3_CHICK (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Gallus gallus GN=PPIL3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.239e-11
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = -1
Query:  326 GGESISG*KFADE-NFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKV 541
            GG SI G KF DE +   KH+  G++SMAN+GP T GSQFF+   K   LD K+ VFG++++G++ +  +EK+
Sbjct:   62 GGTSIWGKKFEDEFSEYLKHSVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKL 134          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIL2_ARATH (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Arabidopsis thaliana GN=PUB49 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.516e-11
Identity = 38/73 (52.05%), Postives = 46/73 (63.01%), Query Frame = -1
Query:  326 GGESISG*KFADE-NFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKV 541
            GGESI G  F DE N    H+G G++SMANSGP T GSQFFV       L+ KH VFG +V G+  + A+E V
Sbjct:  405 GGESIWGKPFKDEPNSKLLHSGRGVVSMANSGPHTNGSQFFVLYKSATHLNYKHTVFGGVVGGLATLAAMENV 477          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIL2_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Rhizopus oryzae GN=cyp14 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.510e-11
Identity = 36/73 (49.32%), Postives = 44/73 (60.27%), Query Frame = -1
Query:  326 GGESISG*KFADE-NFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKV 541
            GGESI    F DE     KH   G+LSMAN G  T GSQFF+  A    LDG H VFG++V G+DV+  +E +
Sbjct:  347 GGESIWKRYFPDEIKTTLKHDARGVLSMANRGKDTNGSQFFITYAAAPHLDGLHTVFGKVVGGLDVLSKLESI 419          
The following BLAST results are available for this feature:
BLAST of CF834955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
CYP4_CAEEL5.893e-1246.51Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhab... [more]
PPIL2_SCHPO7.697e-1245.56Peptidyl-prolyl cis-trans isomerase cyp8 OS=Schizo... [more]
PPIL3_RHIOR1.313e-1152.70Peptidyl-prolyl cis-trans isomerase-like 3 OS=Rhiz... [more]
PPIL3_RAT2.239e-1146.58Peptidyl-prolyl cis-trans isomerase-like 3 OS=Ratt... [more]
PPIL3_HUMAN2.239e-1146.58Peptidyl-prolyl cis-trans isomerase-like 3 OS=Homo... [more]
PPIL3_CHICK2.239e-1146.58Peptidyl-prolyl cis-trans isomerase-like 3 OS=Gall... [more]
PPIL2_ARATH6.516e-1152.05Peptidyl-prolyl cis-trans isomerase-like 2 OS=Arab... [more]
PPIL2_RHIOR8.510e-1149.32Peptidyl-prolyl cis-trans isomerase-like 2 OS=Rhiz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834955 ID=CF834955; Name=CF834955; organism=Citrus sinensis; type=EST; length=541bp
TTTTTTTTTTTAAAAAGGATACGGAATATAACAAGACAAGCCCCTTTTTA
TTTAAAAAGGCAGCTCATAGAAAGACATAAAAACCCTTTCATCGAGAACC
ACCACCGGAGACCCGATCCGACCCGAACAAGTAACATAGCAGGAAAATTA
GATAAAGATTAAAAGTCCTACAGACACGCCCACATAATAATAGATAACGT
AGTCAGCATCACGATCGCGATCAGACGGCTCGTGATGATGGCGATCATTA
TCATGATCAAATCTAAGACAATTGACCGCAATCAGCGATCACGACGGGCT
TGTTGGTCCTGCCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACGACG
TCCATCCCTTCGACGAGCTGACCGAACACAACGTGCTTCCCATCGAGCCA
CTCGGTCTTGGCCGTGCGGACGAAGAACTGAGATCCGGTGGTTCCGGGTC
CGGAATTCGCCATGGAAAGGATTCCGGGGCCGGTGTGCTTCTTCACGAAG
TTCTCATCGGCGAATTTCTAGCCGGAGATTGATTCGCCTCC
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