CF834956

Overview
NameCF834956
Unique NameCF834956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPIA_PANPA (Peptidyl-prolyl cis-trans isomerase A OS=Pan paniscus GN=PPIA PE=3 SV=3)

HSP 1 Score: 217.624 bits (553), Expect = 3.397e-56
Identity = 106/171 (61.99%), Postives = 127/171 (74.27%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            M NP +FFD+ V G+P GR+  ELFAD  P+TA+NFRAL TGEKG G       YKGS F R+IPGFMCQ            KSIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTE LDGKHVVFG+V +GM++V+A+++ GS +G+T+  + IAD GQL
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPIA_MACMU (Peptidyl-prolyl cis-trans isomerase A OS=Macaca mulatta GN=PPIA PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 3.397e-56
Identity = 106/171 (61.99%), Postives = 127/171 (74.27%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            M NP +FFD+ V G+P GR+  ELFAD  P+TA+NFRAL TGEKG G       YKGS F R+IPGFMCQ            KSIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTE LDGKHVVFG+V +GM++V+A+++ GS +G+T+  + IAD GQL
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPIA_HYLSY (Peptidyl-prolyl cis-trans isomerase A OS=Hylobates syndactylus GN=PPIA PE=3 SV=3)

HSP 1 Score: 217.624 bits (553), Expect = 3.397e-56
Identity = 106/171 (61.99%), Postives = 127/171 (74.27%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            M NP +FFD+ V G+P GR+  ELFAD  P+TA+NFRAL TGEKG G       YKGS F R+IPGFMCQ            KSIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTE LDGKHVVFG+V +GM++V+A+++ GS +G+T+  + IAD GQL
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPIA_HYLLE (Peptidyl-prolyl cis-trans isomerase A OS=Hylobates leucogenys GN=PPIA PE=3 SV=3)

HSP 1 Score: 217.624 bits (553), Expect = 3.397e-56
Identity = 106/171 (61.99%), Postives = 127/171 (74.27%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            M NP +FFD+ V G+P GR+  ELFAD  P+TA+NFRAL TGEKG G       YKGS F R+IPGFMCQ            KSIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTE LDGKHVVFG+V +GM++V+A+++ GS +G+T+  + IAD GQL
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPIA_HYLLA (Peptidyl-prolyl cis-trans isomerase A OS=Hylobates lar GN=PPIA PE=3 SV=3)

HSP 1 Score: 217.624 bits (553), Expect = 3.397e-56
Identity = 106/171 (61.99%), Postives = 127/171 (74.27%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            M NP +FFD+ V G+P GR+  ELFAD  P+TA+NFRAL TGEKG G       YKGS F R+IPGFMCQ            KSIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTE LDGKHVVFG+V +GM++V+A+++ GS +G+T+  + IAD GQL
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPIA_HUMAN (Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 3.397e-56
Identity = 106/171 (61.99%), Postives = 127/171 (74.27%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            M NP +FFD+ V G+P GR+  ELFAD  P+TA+NFRAL TGEKG G       YKGS F R+IPGFMCQ            KSIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTE LDGKHVVFG+V +GM++V+A+++ GS +G+T+  + IAD GQL
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPIA_GORGO (Peptidyl-prolyl cis-trans isomerase A OS=Gorilla gorilla gorilla GN=PPIA PE=3 SV=3)

HSP 1 Score: 217.624 bits (553), Expect = 3.397e-56
Identity = 106/171 (61.99%), Postives = 127/171 (74.27%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            M NP +FFD+ V G+P GR+  ELFAD  P+TA+NFRAL TGEKG G       YKGS F R+IPGFMCQ            KSIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTE LDGKHVVFG+V +GM++V+A+++ GS +G+T+  + IAD GQL
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPIA_CERAE (Peptidyl-prolyl cis-trans isomerase A OS=Cercopithecus aethiops GN=PPIA PE=2 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 3.397e-56
Identity = 106/171 (61.99%), Postives = 127/171 (74.27%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            M NP +FFD+ V G+P GR+  ELFAD  P+TA+NFRAL TGEKG G       YKGS F R+IPGFMCQ            KSIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTE LDGKHVVFG+V +GM++V+A+++ GS +G+T+  + IAD GQL
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPIF_RAT (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Rattus norvegicus GN=Ppif PE=1 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 4.437e-56
Identity = 107/174 (61.49%), Postives = 125/174 (71.84%), Query Frame = 1
Query:   28 SPMPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQLS 549
            S   NP ++ D+   GQP GR+++EL ADV P+TA+NFRALCTGEKG G       YKGS+F RVIP FMCQ            KSIYGS+FPDENF  KH GPG+LSMANAGP TNGSQFF+CT KT+ LDGKHVVFG V +GMDVVK I+  GS SG+T+  +VI D GQLS
Sbjct:   40 SSSQNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPAFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQLS 206          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPIA_PIG (Peptidyl-prolyl cis-trans isomerase A OS=Sus scrofa GN=PPIA PE=1 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 5.795e-56
Identity = 105/171 (61.40%), Postives = 127/171 (74.27%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            M NP +FFD+ V G+P GR+  ELFAD  P+TA+NFRAL TGEKG G       YKGS F R+IPGFMCQ            KSIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTE LDGKHVVFG+V +GM++V+A+++ GS +G+T+  + IAD GQ+
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQI 164          
The following BLAST results are available for this feature:
BLAST of CF834956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
PPIA_PANPA3.397e-5661.99Peptidyl-prolyl cis-trans isomerase A OS=Pan panis... [more]
PPIA_MACMU3.397e-5661.99Peptidyl-prolyl cis-trans isomerase A OS=Macaca mu... [more]
PPIA_HYLSY3.397e-5661.99Peptidyl-prolyl cis-trans isomerase A OS=Hylobates... [more]
PPIA_HYLLE3.397e-5661.99Peptidyl-prolyl cis-trans isomerase A OS=Hylobates... [more]
PPIA_HYLLA3.397e-5661.99Peptidyl-prolyl cis-trans isomerase A OS=Hylobates... [more]
PPIA_HUMAN3.397e-5661.99Peptidyl-prolyl cis-trans isomerase A OS=Homo sapi... [more]
PPIA_GORGO3.397e-5661.99Peptidyl-prolyl cis-trans isomerase A OS=Gorilla g... [more]
PPIA_CERAE3.397e-5661.99Peptidyl-prolyl cis-trans isomerase A OS=Cercopith... [more]
PPIF_RAT4.437e-5661.49Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIA_PIG5.795e-5661.40Peptidyl-prolyl cis-trans isomerase A OS=Sus scrof... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834956 ID=CF834956; Name=CF834956; organism=Citrus sinensis; type=EST; length=574bp
TTTGTTGTTTTCTCTCCAATCAACCAATCCCCAATGCCAAACCCCAAATT
GTTCTTCGACATGACCGTCGGCGGACAGCCGGCCGGGAGGATCTTGATGG
AGCTCTTCGCCGATGTCACCCCCCGAACCGCAGATAACTTCCGCGCCCTC
TGCACCGGCGAGAAAGGCGTCGGCAAGTCCGGCAAGCCTCTCCACTACAA
AGGCTCGTCCTTCCAACGTGTGATCCCCGGATTCATGTGCCAGGGGGGAG
ACTTCACCGCCGGAAACGGAACCGGAGGCAAATCAATCTACGGCTCGAAA
TTCCCCGATGAGAACTTCGTGAAGAAGCACACCGGCCCCGGAATCCTCTC
CATGGCGAATGCCGGACCCGGAACCAACGGATCTCAATTCTTCGTCTGTA
CGGCCAAGACCGAGAGGCTCGATGGGAAGCACGTTGTGTTCGGGCAGGTC
GTCCAAGGGATGGACGTCGTCAAGGCCATCAAGAAAGTGGGGTCCAGCTC
CGGCAGGACCAACACGCCCGTCGTGATCGCTGATTGAGGTCAATTGTCTT
AGATTTGATCATGATAATGATCGC
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