CF834956

Overview
NameCF834956
Unique NameCF834956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPI1_STAS1 (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1821 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.765e-12
Identity = 58/166 (34.94%), Postives = 73/166 (43.98%), Query Frame = 1
Query:   85 GRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVC----------------------------TAKTERLDGKHVVFGQVVQGMDVVKAI--KKVG 492
            G +  +L  DV P+T +NF           K+G   +Y G +F RVI  FM Q            +SIYG  F DE   +     G LSMANAGP TNGSQFF+                             T  T  LD KH VFGQ+++G D ++ I   KVG
Sbjct:   25 GDMTFKLLPDVAPKTVENFVTHA-------KNG---YYNGVTFHRVINDFMVQGGDPTATGMGG-ESIYGEPFEDEFSKEAFNIYGALSMANAGPHTNGSQFFIVQMNEVPESMLSQLADGGWPEPIVKAYAETGGTPWLDQKHTVFGQLIEGKDTLEDIANTKVG 179          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: SDC10_PONAB (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Pongo abelii GN=SDCCAG10 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 48/143 (33.57%), Postives = 69/143 (48.25%), Query Frame = 1
Query:   25 QSPMPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQV 450
            Q P  N K+    T     AG I +EL++   P+   NF  LC             +Y  + F RV+PGF+ Q            +SIYG+ F DE   + +    G+++MANAG   NGSQFF    + + L+ KH +FG+V
Sbjct:    7 QEPPTNGKVLLKTT-----AGDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGDPTGTGSGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKV 133          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: SDC10_MACFA (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Macaca fascicularis GN=SDCCAG10 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 48/143 (33.57%), Postives = 69/143 (48.25%), Query Frame = 1
Query:   25 QSPMPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQV 450
            Q P  N K+    T     AG I +EL++   P+   NF  LC             +Y  + F RV+PGF+ Q            +SIYG+ F DE   + +    G+++MANAG   NGSQFF    + + L+ KH +FG+V
Sbjct:    7 QEPPTNGKVLLKTT-----AGDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGDPTGTGSGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKV 133          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: SDC10_HUMAN (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Homo sapiens GN=SDCCAG10 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 48/143 (33.57%), Postives = 69/143 (48.25%), Query Frame = 1
Query:   25 QSPMPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQV 450
            Q P  N K+    T     AG I +EL++   P+   NF  LC             +Y  + F RV+PGF+ Q            +SIYG+ F DE   + +    G+++MANAG   NGSQFF    + + L+ KH +FG+V
Sbjct:    7 QEPPTNGKVLLKTT-----AGDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGDPTGTGSGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKV 133          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: SDC10_DANRE (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Danio rerio GN=sdccag10 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 48/143 (33.57%), Postives = 70/143 (48.95%), Query Frame = 1
Query:   25 QSPMPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQV 450
            Q P  N K+    +     AG I +EL++  TP+   NF  LC             +Y G+ F R++P F+ Q            +SIYG  F DE   + +    G+++MANAGP  NGSQFF    + + L+ KH +FG+V
Sbjct:    7 QEPPTNGKVLLKTS-----AGDIDIELWSKETPKACRNFVQLCMEG----------YYDGTIFHRMVPEFIVQGGDPTGTGTGG-ESIYGRPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKV 133          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPIL2_NEUCR (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Neurospora crassa GN=cyp-8 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.932e-12
Identity = 52/153 (33.99%), Postives = 72/153 (47.06%), Query Frame = 1
Query:   85 GRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMD-VVKAIKKVGS-SSGRTNTPVVIAD 534
            G + +EL  +  P+   NF  L   EKG        +Y+  +F R I  FM Q             SI+G  F DE      H+  GI+SMAN G  TN SQFF+       LD KH +F +V++G D  + A++ V +  S R    +VI D
Sbjct:  339 GPLTLELLPEFAPKAVWNFLRL--SEKG--------YYRDVAFHRSIRNFMIQGGDPSGTGRGG-SSIWGKNFEDEFEGPNTHSARGIVSMANKGKNTNSSQFFITYRPASHLDRKHTIFAKVIEGQDTTLTAMENVATDGSDRPLNKIVIKD 480          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: SDC10_XENLA (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Xenopus laevis GN=sdccag10 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.760e-12
Identity = 50/167 (29.94%), Postives = 75/167 (44.91%), Query Frame = 1
Query:   25 QSPMPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPV 522
            Q P  N K+    T     AG I +EL++   P+   NF  LC             +Y  + F RV+P F+ Q            +S++G  F DE   + +    G+++MANAGP  NGSQFF    + + L+ KH +FG+V  G  +   ++      G    PV
Sbjct:    7 QEPPSNGKVLLKTT-----AGEIDIELWSKEAPKACRNFVQLCLEG----------YYDNTIFHRVVPEFIIQGGDPTGTGTGG-ESVFGKPFRDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTIYNILRLAEVDIGEDERPV 156          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: BPPI_STRP6 (Putative bifunctional phosphatase/peptidyl-prolyl cis-trans isomerase OS=Streptococcus pyogenes serotype M6 GN=M6_Spy1377 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.494e-11
Identity = 54/165 (32.73%), Postives = 71/165 (43.03%), Query Frame = 1
Query:   85 GRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVC---------------------------TAKTERLDGKHVVFGQVV-----QGMDVVKAIK 483
            G + + LF D  P+T  NF        G+ K G   +Y G  F R+IP FM Q            +SIYG  F DE   + +   G LSMANAGP TNGSQFF+                               T  LD +H VFGQ+V     Q +D++  ++
Sbjct:  297 GDMTLVLFPDHAPKTVANFL-------GLAKEG---YYDGIIFHRIIPEFMIQGGDPTGTGMGG-QSIYGESFEDEFSDELYNLRGALSMANAGPNTNGSQFFIVQNSKIPYAKKELERGGWPTPIAAAYAENGGTPHLDRRHTVFGQLVDETSFQVLDLIAGVE 450          
The following BLAST results are available for this feature:
BLAST of CF834956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
PPI1_STAS11.765e-1234.94Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
SDC10_PONAB2.305e-1233.57Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Po... [more]
SDC10_MACFA2.305e-1233.57Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Ma... [more]
SDC10_HUMAN2.305e-1233.57Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Ho... [more]
SDC10_DANRE2.305e-1233.57Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Da... [more]
PPIL2_NEUCR3.932e-1233.99Peptidyl-prolyl cis-trans isomerase-like 2 OS=Neur... [more]
SDC10_XENLA8.760e-1229.94Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Xe... [more]
BPPI_STRP61.494e-1132.73Putative bifunctional phosphatase/peptidyl-prolyl ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834956 ID=CF834956; Name=CF834956; organism=Citrus sinensis; type=EST; length=574bp
TTTGTTGTTTTCTCTCCAATCAACCAATCCCCAATGCCAAACCCCAAATT
GTTCTTCGACATGACCGTCGGCGGACAGCCGGCCGGGAGGATCTTGATGG
AGCTCTTCGCCGATGTCACCCCCCGAACCGCAGATAACTTCCGCGCCCTC
TGCACCGGCGAGAAAGGCGTCGGCAAGTCCGGCAAGCCTCTCCACTACAA
AGGCTCGTCCTTCCAACGTGTGATCCCCGGATTCATGTGCCAGGGGGGAG
ACTTCACCGCCGGAAACGGAACCGGAGGCAAATCAATCTACGGCTCGAAA
TTCCCCGATGAGAACTTCGTGAAGAAGCACACCGGCCCCGGAATCCTCTC
CATGGCGAATGCCGGACCCGGAACCAACGGATCTCAATTCTTCGTCTGTA
CGGCCAAGACCGAGAGGCTCGATGGGAAGCACGTTGTGTTCGGGCAGGTC
GTCCAAGGGATGGACGTCGTCAAGGCCATCAAGAAAGTGGGGTCCAGCTC
CGGCAGGACCAACACGCCCGTCGTGATCGCTGATTGAGGTCAATTGTCTT
AGATTTGATCATGATAATGATCGC
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