CF834956

Overview
NameCF834956
Unique NameCF834956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: CYP6_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizopus oryzae GN=cyp6 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.607e-48
Identity = 93/168 (55.36%), Postives = 113/168 (67.26%), Query Frame = 1
Query:   43 PKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            PK+FFD+ V GQ +GR+  +LF+D  P+TA+NFRALCTGEKG G SGKPLHYK S F R+IPGFM Q            +SIYG  F DENF  KH G G+LSMANAGP TNGSQFF+    T  LDG H VFGQ+V G  V+  +++ GS SG  +  + I D G+L
Sbjct:    7 PKVFFDIAVNGQHSGRMTFKLFSDTVPKTAENFRALCTGEKGKGISGKPLHYKNSYFHRIIPGFMAQGGDFTMGDGRGGESIYGRTFKDENFTLKHKGKGLLSMANAGPNTNGSQFFITFVDTPWLDGNHTVFGQIVDGSKVLDLLEQHGSRSGMPSAKIEITDCGEL 174          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPIE_PONAB (Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 4.447e-48
Identity = 94/176 (53.41%), Postives = 119/176 (67.61%), Query Frame = 1
Query:   16 PINQSPMPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQ 543
            P  +    NP+++ D+ +G +PAGRI M L +DV P TA+NFR LCT EKG G       +KGSSF R+IP FMCQ            KSIYG KF DENF+ KHTGPG+LSMAN+GP TNGSQFF+   KT+ LDGKHVVFG+V +G+DV++ I+  GS  G+    V+IAD G+
Sbjct:  131 PAAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEARGSKDGKPKQKVIIADCGE 299          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPIE_SCHMA (Peptidyl-prolyl cis-trans isomerase E OS=Schistosoma mansoni PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 5.808e-48
Identity = 94/168 (55.95%), Postives = 116/168 (69.05%), Query Frame = 1
Query:   43 PKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            P++FFD+ +G   AGRI+MEL +D+ PRTA+NFRALCTGE+G G       Y    F RVIP FMCQ            KSIYG KF DENF  +H G G+LSMAN+GP TNGSQFF+CT K + LDGKHVVFG+VV G +VVK ++ VGS SG+   PV+I+  G+L
Sbjct:  112 PRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG-------YHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 272          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPIE_MOUSE (Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 5.808e-48
Identity = 94/176 (53.41%), Postives = 119/176 (67.61%), Query Frame = 1
Query:   16 PINQSPMPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQ 543
            P  +    NP+++ D+ +G +PAGRI M L +DV P TA+NFR LCT EKG G       +KGSSF R+IP FMCQ            KSIYG KF DENF+ KHTGPG+LSMAN+GP TNGSQFF+   KT+ LDGKHVVFG+V +G+DV++ I+  GS  G+    V+IAD G+
Sbjct:  131 PTAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVMIADCGE 299          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PAL4B_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4B OS=Homo sapiens GN=PPIAL4B PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 9.907e-48
Identity = 95/170 (55.88%), Postives = 118/170 (69.41%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQ 543
            M N  +FFD+TV G+P GRI ++LFAD   +TA+NFRAL TGEKG         YKGS F R+IPGFMCQ            KSIYG KF DEN ++KHTG GILSMANAGP TNGSQFF+C AKTE LDGKHV FG+V + +++V+A++  G  + +T+  + IAD GQ
Sbjct:    1 MVNSVVFFDITVDGKPLGRISIKLFADKILKTAENFRALSTGEKG-------FRYKGSCFHRIIPGFMCQGGDFTRHNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPID_MOUSE (40 kDa peptidyl-prolyl cis-trans isomerase OS=Mus musculus GN=Ppid PE=1 SV=3)

HSP 1 Score: 189.119 bits (479), Expect = 1.294e-47
Identity = 92/170 (54.12%), Postives = 118/170 (69.41%), Query Frame = 1
Query:   40 NPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKS-GKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            NP++FFD+ +GG+  GRI++ELFAD+ P+TA+NFRALCTGEKG G + GKPLH+KG  F R+I  FM Q            +SIYG KF DENF  KH   G+LSMANAGP TNGSQFF+ T  T  LDGKHVVFGQV++G+ V + ++ V  +  +     VIA+ G+L
Sbjct:   15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGSTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARTLENVEVNGEKPAKLCVIAECGEL 184          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: CYPH_SCHPO (Peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=ppi1 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.690e-47
Identity = 95/159 (59.75%), Postives = 109/159 (68.55%), Query Frame = 1
Query:   52 FFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVI 528
            FFD+   GQP GRI+ +LF DV P+TA NFRALCTGEKG G       Y GS+F RVIP FM Q            KSIYG KFPDENF  KH  PG+LSMANAGP TNGSQFF+ T  T  LDGKHVVFG+V +GMDVVK ++ +GS+SG T   +VI
Sbjct:    5 FFDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYG-------YAGSTFHRVIPQFMLQGGDFTRGNGTGGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTEGMDVVKKVESLGSNSGATRARIVI 156          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPIE_BOVIN (Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.207e-47
Identity = 92/176 (52.27%), Postives = 118/176 (67.05%), Query Frame = 1
Query:   16 PINQSPMPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQ 543
            P  +    NP+++ D+ +G +PAGRI M L +DV P TA+NFR LCT EKG G       +KGSSF R+IP FMCQ            KSIYG KF DENF+ KHTGPG+LSMAN+GP TNGSQFF+   KT+ LDGKHVVFG++  G+DV++ I+  GS  G+    V+I+D G+
Sbjct:  131 PAVKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEITDGLDVLRQIEAQGSKDGKPKQKVIISDCGE 299          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPID_RAT (40 kDa peptidyl-prolyl cis-trans isomerase OS=Rattus norvegicus GN=Ppid PE=1 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 2.207e-47
Identity = 92/170 (54.12%), Postives = 118/170 (69.41%), Query Frame = 1
Query:   40 NPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKS-GKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            NP++FFD+ +GG+  GRI++ELFAD+ P+TA+NFRALCTGEKG G + GKPLH+KG  F R+I  FM Q            +SIYG KF DENF  KH   G+LSMANAGP TNGSQFF+ T  T  LDGKHVVFGQV++G+ V + ++ V  +  +     VIA+ G+L
Sbjct:   15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARMLENVEVNGEKPAKLCVIAECGEL 184          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: PPID_BOVIN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Bos taurus GN=PPID PE=1 SV=6)

HSP 1 Score: 188.348 bits (477), Expect = 2.207e-47
Identity = 93/170 (54.71%), Postives = 117/170 (68.82%), Query Frame = 1
Query:   40 NPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKS-GKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            NP++FFD+ +GG+  GRI++ELFAD+ P+TA+NFRALCTGEKG+G + GKPLH+KG  F R+I  FM Q            +SIYG KF DENF  KH   G+LSMANAG  TNGSQFF+ T  T  LDGKHVVFGQV++GM V K ++ V     +     VIA+ G+L
Sbjct:   15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGEL 184          
The following BLAST results are available for this feature:
BLAST of CF834956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
CYP6_RHIOR2.607e-4855.36Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizop... [more]
PPIE_PONAB4.447e-4853.41Peptidyl-prolyl cis-trans isomerase E OS=Pongo abe... [more]
PPIE_SCHMA5.808e-4855.95Peptidyl-prolyl cis-trans isomerase E OS=Schistoso... [more]
PPIE_MOUSE5.808e-4853.41Peptidyl-prolyl cis-trans isomerase E OS=Mus muscu... [more]
PAL4B_HUMAN9.907e-4855.88Peptidylprolyl cis-trans isomerase A-like 4B OS=Ho... [more]
PPID_MOUSE1.294e-4754.1240 kDa peptidyl-prolyl cis-trans isomerase OS=Mus ... [more]
CYPH_SCHPO1.690e-4759.75Peptidyl-prolyl cis-trans isomerase OS=Schizosacch... [more]
PPIE_BOVIN2.207e-4752.27Peptidyl-prolyl cis-trans isomerase E OS=Bos tauru... [more]
PPID_RAT2.207e-4754.1240 kDa peptidyl-prolyl cis-trans isomerase OS=Ratt... [more]
PPID_BOVIN2.207e-4754.7140 kDa peptidyl-prolyl cis-trans isomerase OS=Bos ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834956 ID=CF834956; Name=CF834956; organism=Citrus sinensis; type=EST; length=574bp
TTTGTTGTTTTCTCTCCAATCAACCAATCCCCAATGCCAAACCCCAAATT
GTTCTTCGACATGACCGTCGGCGGACAGCCGGCCGGGAGGATCTTGATGG
AGCTCTTCGCCGATGTCACCCCCCGAACCGCAGATAACTTCCGCGCCCTC
TGCACCGGCGAGAAAGGCGTCGGCAAGTCCGGCAAGCCTCTCCACTACAA
AGGCTCGTCCTTCCAACGTGTGATCCCCGGATTCATGTGCCAGGGGGGAG
ACTTCACCGCCGGAAACGGAACCGGAGGCAAATCAATCTACGGCTCGAAA
TTCCCCGATGAGAACTTCGTGAAGAAGCACACCGGCCCCGGAATCCTCTC
CATGGCGAATGCCGGACCCGGAACCAACGGATCTCAATTCTTCGTCTGTA
CGGCCAAGACCGAGAGGCTCGATGGGAAGCACGTTGTGTTCGGGCAGGTC
GTCCAAGGGATGGACGTCGTCAAGGCCATCAAGAAAGTGGGGTCCAGCTC
CGGCAGGACCAACACGCCCGTCGTGATCGCTGATTGAGGTCAATTGTCTT
AGATTTGATCATGATAATGATCGC
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