CF834962

Overview
NameCF834962
Unique NameCF834962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1793 contig Csv1_Contig1793:165..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GLRX2_HUMAN (Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=GLRX2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.373e-19
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = 3
Query:   90 QETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 359
            QET+S N VV FSKT C +C   ++LF  + V +K +EL+    G+  Q AL + TG++TVP +F+ G  IGG   T  LH+EGKL+PL+
Sbjct:   61 QETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 150          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GLRX2_PONAB (Glutaredoxin-2, mitochondrial OS=Pongo abelii GN=GLRX2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.420e-18
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = 3
Query:   90 QETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 359
            QET+S N VV FSKT C +C   ++LF+ + V +K +EL+    G+  Q AL + TG +TVP +F+ G  IGG   T  LH+EGKL+PL+
Sbjct:   58 QETISDNCVVIFSKTSCSYCTMAKKLFRDMNVNYKVVELDLLEYGNQFQDALYKMTGGRTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 147          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GLRX2_RAT (Glutaredoxin-2, mitochondrial OS=Rattus norvegicus GN=Glrx2 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.422e-18
Identity = 41/90 (45.56%), Postives = 60/90 (66.67%), Query Frame = 3
Query:   90 QETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 359
            QET+S+N VV FSK+ C +C   +++F  + V +K +EL+    GS  Q AL + TG++TVP +F+ G  IGG   T  LH+EGKL+PL+
Sbjct:   54 QETISNNCVVIFSKSSCSYCSMAKKIFHDMNVNYKVVELDMVEYGSQFQEALYKMTGERTVPRIFVNGIFIGGAADTHRLHKEGKLLPLV 143          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GRS12_ARATH (Monothiol glutaredoxin-S12, chloroplastic OS=Arabidopsis thaliana GN=GRXS12 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.395e-18
Identity = 49/99 (49.49%), Postives = 66/99 (66.67%), Query Frame = 3
Query:   96 TVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNK-ESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEA-GAVGKT 386
            TV+ N VV +SKT+C +    + LF+ L V    +EL++  S+GS +Q+ L + TGQ TVPNVFIGGKHIGGC  T  LH +G+L  +L EA G  G+T
Sbjct:   81 TVAENPVVVYSKTWCSYSSQVKSLFKSLQVEPLVVELDQLGSEGSQLQNVLEKITGQYTVPNVFIGGKHIGGCSDTLQLHNKGELEAILAEANGKNGQT 179          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GRXC4_ARATH (Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 9.203e-18
Identity = 40/94 (42.55%), Postives = 62/94 (65.96%), Query Frame = 3
Query:   90 QETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAG 371
            ++T+SS+ +V FSK++CP+C   + +F++L      +EL++  DG  IQ+AL E  G++TVP VFI GKH+GG D T   +  G+L  LL  +G
Sbjct:   36 KKTISSHKIVIFSKSYCPYCKKAKSVFRELDQVPYVVELDEREDGWSIQTALGEIVGRRTVPQVFINGKHLGGSDDTVDAYESGELAKLLGVSG 129          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GRS10_ORYSJ (Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. japonica GN=GRXS10 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.202e-17
Identity = 43/93 (46.24%), Postives = 63/93 (67.74%), Query Frame = 3
Query:   90 QETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNK-ESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTE 365
            + T++ N VV +SK++C + +  + LF+++GV    IEL++  + G  +Q  L   TGQ TVPNVFIGGKHIGGC  T  LHR+G+L  +L+E
Sbjct:   64 KRTLADNPVVIYSKSWCSYSMEVKALFKRIGVQPHVIELDQLGAQGPQLQKVLERLTGQSTVPNVFIGGKHIGGCTDTVKLHRKGELATMLSE 156          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: TRXR3_MOUSE (Thioredoxin reductase 3 (Fragment) OS=Mus musculus GN=Txnrd3 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.050e-17
Identity = 39/97 (40.21%), Postives = 59/97 (60.82%), Query Frame = 3
Query:   84 KAQETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGA 374
            + ++ +  N V+ FSK++CP     +ELF  LGV +  +EL++  DG+ +Q  L E + QKTVPN+F+   H+GGCD T   H+ G L  LL +  A
Sbjct:  112 RLRDLIEGNRVMIFSKSYCPHSTRVKELFSSLGVVYNILELDQVDDGASVQEVLTEISNQKTVPNIFVNKVHVGGCDRTFQAHQNGLLQKLLQDDSA 208          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GRXC5_ARATH (Glutaredoxin-C5, chloroplastic OS=Arabidopsis thaliana GN=GRXC5 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.497e-17
Identity = 44/94 (46.81%), Postives = 62/94 (65.96%), Query Frame = 3
Query:   90 QETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKES-DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEA 368
            ++TV+ N+VV +SKT+C +C   + LF++LGV    +EL++    G  +Q  L   TGQ TVPNVF+ GKHIGGC  T  L+R+G L  +L EA
Sbjct:   74 RKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEA 167          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GRXC3_ARATH (Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.866e-16
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 3
Query:   90 QETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 359
            Q  + SN +V FSK++CP+C+  + +F QL      +EL++  DG  IQ  L E+ G++TVP VF+ GKHIGG D   A    G+L  LL
Sbjct:   38 QNAILSNKIVIFSKSYCPYCLRSKRIFSQLKEEPFVVELDQREDGDQIQYELLEFVGRRTVPQVFVNGKHIGGSDDLGAALESGQLQKLL 127          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: TRXR3_HUMAN (Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.050e-16
Identity = 39/89 (43.82%), Postives = 55/89 (61.80%), Query Frame = 3
Query:   99 VSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTE 365
            +  + VV FSK++CP     +ELF  LGV    +EL++  DG+ +Q  L+E T QKTVPN+F+   H+GGCD T   ++ G L  LL E
Sbjct:  174 IERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQE 262          
The following BLAST results are available for this feature:
BLAST of CF834962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
GLRX2_HUMAN6.373e-1946.67Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=G... [more]
GLRX2_PONAB1.420e-1846.67Glutaredoxin-2, mitochondrial OS=Pongo abelii GN=G... [more]
GLRX2_RAT2.422e-1845.56Glutaredoxin-2, mitochondrial OS=Rattus norvegicus... [more]
GRS12_ARATH5.395e-1849.49Monothiol glutaredoxin-S12, chloroplastic OS=Arabi... [more]
GRXC4_ARATH9.203e-1842.55Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 P... [more]
GRS10_ORYSJ1.202e-1746.24Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. ... [more]
TRXR3_MOUSE2.050e-1740.21Thioredoxin reductase 3 (Fragment) OS=Mus musculus... [more]
GRXC5_ARATH3.497e-1746.81Glutaredoxin-C5, chloroplastic OS=Arabidopsis thal... [more]
GRXC3_ARATH3.866e-1643.33Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 P... [more]
TRXR3_HUMAN5.050e-1643.82Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834962 ID=CF834962; Name=CF834962; organism=Citrus sinensis; type=EST; length=605bp
TACATCATATAGGATTTGAAGNTNATTTAGGGTTTGTGAGATTTCCCCTC
AAAGACAAAGAAGACACAGAAATGGCTTTGCCCAAGGCCCAGGAAACCGT
TTCCTCCAATTCCGTCGTCGCTTTCAGCAAAACGTTTTGTCCGTTCTGCG
TGAGTGGCAGAGAGCTGTTTCAGCAACTCGGAGTCACTTTCAAGGCCATT
GAACTGAACAAAGAAAGTGATGGAAGTGACATTCAATCAGCTCTAGCTGA
GTGGACTGGACAGAAAACTGTTCCAAATGTCTTCATCGGAGGGAAACACA
TTGGTGGCTGCGATTCAACTACTGCACTGCACAGGGAAGGGAAGCTGGTT
CCTCTGCTCACTGAAGCTGGAGCTGTGGGCAAGACATCTGCCTGATGGAT
GGCTATTGTCTGCCTGTTAATTCTAGTAATAAATAAAGAATGTGTTGGTA
GTGCTTAATCTGTCTGAATTAAACATGAAATTATGCTTATTTGAGTAATT
TCCAATGCACTTTTTTGTTCAGTTTCTGTTTTATGTTGAAATCTGTATGA
ATTTTATCAGATTTTTCATCTACTATATCCATGTAGAGTCATTTCTACTG
TAAAA
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