CF834962

Overview
NameCF834962
Unique NameCF834962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1793 contig Csv1_Contig1793:165..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GRXC8_ORYSJ (Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 8.613e-16
Identity = 38/92 (41.30%), Postives = 61/92 (66.30%), Query Frame = 3
Query:   90 QETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFK--AIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 359
            + TV ++ VV FSK++CP+C   + +F++L +  +   +EL++  DG +IQ AL++  G++TVP VF+ GKH+GG D T   +  GKL  LL
Sbjct:   37 KSTVKAHDVVIFSKSYCPYCRRAKAVFKELELKKEPYVVELDQREDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAYESGKLAKLL 128          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GRXS6_ORYSJ (Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica GN=GRXS6 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.292e-15
Identity = 36/90 (40.00%), Postives = 53/90 (58.89%), Query Frame = 3
Query:   90 QETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 359
            Q  + SN +  FSKT+CP+ +  + +F+ L      +EL+   DG +IQS L +  G+ TVP VF+ G+H+GG D T   H  G+L  LL
Sbjct:   35 QNAIYSNRITIFSKTYCPYSMRAKRIFRDLKENPYIVELDLREDGREIQSVLLDLVGRHTVPQVFVNGQHVGGSDDTANAHSNGQLQKLL 124          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GLRX2_YEAST (Glutaredoxin-2, mitochondrial OS=Saccharomyces cerevisiae GN=GRX2 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.122e-14
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 3
Query:   39 RFPLKDKEDTEMALPKAQETVSSNSVVAFSKTFCPFCVSGRE-LFQQLGVTFK---AIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 359
            RF    K  ++  +   ++ +    V   +KT+CP+C +    LFQ+L V       +EL++ S+GS+IQ AL E +GQKTVPNV+I GKHIGG      L + GKL  +L
Sbjct:   28 RFLSTPKMVSQETVAHVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 138          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GLRX2_SCHPO (Glutaredoxin-2 OS=Schizosaccharomyces pombe GN=grx2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.726e-14
Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:   66 TEMALPKAQETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTE 365
            T +A    ++ +S+N V  FSK+FCPFC + +    +    +KA EL+K  +GSDIQ+ L E T Q TVP++F   + IGG      L   G L  ++ E
Sbjct:    2 TSIAKAFVEKAISNNPVTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQSTVPSIFFRNQFIGGNSDLNKLRSSGTLTKMIAE 101          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GRXC2_ORYSJ (Putative glutaredoxin-C2 OS=Oryza sativa subsp. japonica GN=GRXC2 PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.173e-14
Identity = 42/93 (45.16%), Postives = 58/93 (62.37%), Query Frame = 3
Query:  102 SSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKT-VPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 377
            S  +VV F  + C  C   + LF +LGV++   E++K+ +G D++ ALA   G+   VP VFIGGK +G  D   +LH  GKLVPLL EAGA+
Sbjct:   10 SQRAVVIFGASNCFMCHVVKTLFSELGVSWAVHEVDKDPNGKDVERALAGMVGRTPPVPAVFIGGKLVGPTDQVMSLHLAGKLVPLLREAGAL 102          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GLRX1_YEAST (Glutaredoxin-1 OS=Saccharomyces cerevisiae GN=GRX1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 39/102 (38.24%), Postives = 61/102 (59.80%), Query Frame = 3
Query:   66 TEMALPKAQETVSSNSVVAFSKTFCPFCVSG-RELFQQLGVTFKAI---ELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 359
            ++  +   ++ ++ N +   SKT+CP+C +    LF++L V    +   +LN   +G+DIQ+AL E  GQ+TVPN++I GKHIGG D    L   G+L  LL
Sbjct:    3 SQETIKHVKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGELEELL 104          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GRXS3_ARATH (Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana GN=GRXS3 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.986e-12
Identity = 41/96 (42.71%), Postives = 56/96 (58.33%), Query Frame = 3
Query:   90 QETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 377
            Q+ +S  SVV FSK  C    + + LF  LGV     EL++ S G +I+ ALA+     TVP VFIGG+ +GG +   +LH    LVP+L  AGA+
Sbjct:    5 QKMISEKSVVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEISRGKEIEHALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGAL 100          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GRXC1_ORYSJ (Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN=GRXC1.1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.593e-12
Identity = 38/101 (37.62%), Postives = 57/101 (56.44%), Query Frame = 3
Query:   78 LPKAQETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQK-TVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 377
            + +     +  +VV FS + C  C +   LF +LGV    +EL+++  G +++ ALA   G+   VP VFIGG+ +G  D   +LH  G LVPLL  AGA+
Sbjct:    1 MDRVNRLAAQRAVVIFSMSSCCMCHTVTRLFCELGVNPTVVELDEDPRGKEMEKALARLLGRSPAVPAVFIGGRLVGSTDKVMSLHLSGNLVPLLRNAGAL 101          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GLRX1_SCHPO (Glutaredoxin-1 OS=Schizosaccharomyces pombe GN=grx1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.387e-12
Identity = 33/90 (36.67%), Postives = 56/90 (62.22%), Query Frame = 3
Query:   99 VSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEA 368
            V+ N VV F+K++CP+C +  ++     +  +  +++  ++G +IQS L + TGQ+TVPN+FI  KH+GG     AL ++G+L  L   A
Sbjct:   12 VADNDVVVFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKKTGQRTVPNIFIHQKHVGGNSDFQALFKKGELDSLFNTA 101          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GLRX1_PIG (Glutaredoxin-1 OS=Sus scrofa GN=GLRX PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.424e-12
Identity = 38/105 (36.19%), Postives = 56/105 (53.33%), Query Frame = 3
Query:   72 MALPKAQETVSSNSVVAFSKTFCPFCVSGRELFQQLGVT---FKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 377
            MA       +    VV F K  CPFC   +EL  QL       + +++   SD ++IQ  L + TG +TVP VFIG + IGGC    ++H+ G+L+  L + GA+
Sbjct:    1 MAQAFVNSKIQPGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQQIGAL 105          
The following BLAST results are available for this feature:
BLAST of CF834962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
GRXC8_ORYSJ8.613e-1641.30Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN... [more]
GRXS6_ORYSJ7.292e-1540.00Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. j... [more]
GLRX2_YEAST2.122e-1439.64Glutaredoxin-2, mitochondrial OS=Saccharomyces cer... [more]
GLRX2_SCHPO4.726e-1438.00Glutaredoxin-2 OS=Schizosaccharomyces pombe GN=grx... [more]
GRXC2_ORYSJ6.173e-1445.16Putative glutaredoxin-C2 OS=Oryza sativa subsp. ja... [more]
GLRX1_YEAST1.053e-1338.24Glutaredoxin-1 OS=Saccharomyces cerevisiae GN=GRX1... [more]
GRXS3_ARATH1.986e-1242.71Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana ... [more]
GRXC1_ORYSJ2.593e-1237.62Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN... [more]
GLRX1_SCHPO3.387e-1236.67Glutaredoxin-1 OS=Schizosaccharomyces pombe GN=grx... [more]
GLRX1_PIG4.424e-1236.19Glutaredoxin-1 OS=Sus scrofa GN=GLRX PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06H02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834962 ID=CF834962; Name=CF834962; organism=Citrus sinensis; type=EST; length=605bp
TACATCATATAGGATTTGAAGNTNATTTAGGGTTTGTGAGATTTCCCCTC
AAAGACAAAGAAGACACAGAAATGGCTTTGCCCAAGGCCCAGGAAACCGT
TTCCTCCAATTCCGTCGTCGCTTTCAGCAAAACGTTTTGTCCGTTCTGCG
TGAGTGGCAGAGAGCTGTTTCAGCAACTCGGAGTCACTTTCAAGGCCATT
GAACTGAACAAAGAAAGTGATGGAAGTGACATTCAATCAGCTCTAGCTGA
GTGGACTGGACAGAAAACTGTTCCAAATGTCTTCATCGGAGGGAAACACA
TTGGTGGCTGCGATTCAACTACTGCACTGCACAGGGAAGGGAAGCTGGTT
CCTCTGCTCACTGAAGCTGGAGCTGTGGGCAAGACATCTGCCTGATGGAT
GGCTATTGTCTGCCTGTTAATTCTAGTAATAAATAAAGAATGTGTTGGTA
GTGCTTAATCTGTCTGAATTAAACATGAAATTATGCTTATTTGAGTAATT
TCCAATGCACTTTTTTGTTCAGTTTCTGTTTTATGTTGAAATCTGTATGA
ATTTTATCAGATTTTTCATCTACTATATCCATGTAGAGTCATTTCTACTG
TAAAA
back to top