CF834962

Overview
NameCF834962
Unique NameCF834962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GRXC5_ORYSJ (Putative glutaredoxin-C5 OS=Oryza sativa subsp. japonica GN=GRXC5 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.778e-12
Identity = 43/108 (39.81%), Postives = 57/108 (52.78%), Query Frame = 3
Query:   69 EMALPKAQETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQ-----KTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 377
            E A  + +   S ++VV FS + C  C + + LF  +GV     EL+ +  G D++ ALA   G        VP VFIGGK +G  D   A H  G LVPLL EAGA+
Sbjct:   26 ETAAERVERLASESAVVVFSVSSCCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLERALARLVGAGGAAAAAVPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGAL 133          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GRXC9_ORYSJ (Glutaredoxin-C9 OS=Oryza sativa subsp. japonica GN=GRXC9 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.546e-12
Identity = 44/114 (38.60%), Postives = 64/114 (56.14%), Query Frame = 3
Query:   54 DKEDTEMALPKAQETV----SSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWT--GQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 377
            ++E+   A+    E V    S N+VV FS + C  C   + L   LGV     EL++ +  +DIQ+AL++    GQ  VP VF+GG+ +GG +   A H  G LVPLL +AGA+
Sbjct:   77 EEEEAAAAMMSVYERVARMASGNAVVVFSASGCCMCHVVKRLLLGLGVGPAVYELDQLAAAADIQAALSQLLPPGQPPVPVVFVGGRLLGGVEKVMACHINGTLVPLLKQAGAL 190          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: YZ73_CAEEL (Uncharacterized monothiol glutaredoxin F10D7.3 OS=Caenorhabditis elegans GN=F10D7.3 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 9.855e-12
Identity = 38/111 (34.23%), Postives = 64/111 (57.66%), Query Frame = 3
Query:   48 LKDKEDTEMALPKAQETVSSNSVVAFSKTFCPFCVSGRELFQQLGVT-FKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 377
            LKD ED      K    V ++ V+ +SKT+CP+    + +     +   K +EL++ +   ++Q  L +++G+ TVP +FI GK +GG D T A+  +G+L PLL +A A+
Sbjct:   30 LKDLED------KIVNDVMTHKVMVYSKTYCPWSKRLKAILANYEIDDMKIVELDRSNQTEEMQEILKKYSGRTTVPQLFISGKFVGGHDETKAIEEKGELRPLLEKAHAL 134          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GRXS4_ARATH (Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana GN=GRXS4 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.855e-12
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:   78 LPKAQETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 377
            + K Q+ +S  SVV FSK  C    + + LF   GV     EL++ + G +I+ ALA+     TVP VFIGG+ +GG +   +LH    LVP+L   GA+
Sbjct:    1 MDKLQKMISEKSVVIFSKNSCCMSHTIKTLFIDFGVNPTIYELDEINRGKEIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRVGAL 100          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GRXS7_ARATH (Monothiol glutaredoxin-S7 OS=Arabidopsis thaliana GN=GRXS7 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.681e-11
Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:   78 LPKAQETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 377
            + K Q+  S  S+V FSK  C    + + LF  LGV     EL++ + G +I+ ALA+     TVP VFIGG+ +GG +   +LH    L+P+L   GA+
Sbjct:    1 MEKLQKMTSEKSLVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEINRGKEIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLIPMLKRVGAL 100          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GRXS5_ARATH (Monothiol glutaredoxin-S5 OS=Arabidopsis thaliana GN=GRXS5 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.681e-11
Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 3
Query:   90 QETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 377
            Q+ +S  SVV FSK  C    + + LF   GV     EL++ + G +I+ ALA+     TVP VFIGG+ +GG +   +LH    LVP+L  AGA+
Sbjct:    5 QKMISEKSVVIFSKNSCCMSHTIKTLFLDFGVNPTIYELDEINIGREIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGAL 100          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GRXC3_ORYSJ (Glutaredoxin-C3 OS=Oryza sativa subsp. japonica GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.195e-11
Identity = 42/111 (37.84%), Postives = 58/111 (52.25%), Query Frame = 3
Query:   69 EMALPKAQETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQ--------KTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 377
            E A+ + +   S ++VV FS + C  C + + LF  +GV     EL+ +  G +++ ALA   G           VP VFIGGK +G  D   A H  G LVPLL EAGA+
Sbjct:   23 ESAVARVERLASESAVVVFSVSSCCMCHAVKRLFCGMGVHPTVHELDLDPRGRELERALARLVGYGGPAAASPPVVPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGAL 133          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GLRX1_RABIT (Glutaredoxin-1 OS=Oryctolagus cuniculus GN=GLRX PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.867e-11
Identity = 40/104 (38.46%), Postives = 57/104 (54.81%), Query Frame = 3
Query:   87 AQETVSSN----SVVAFSKTFCPFCVSGRELFQQLGVT---FKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 377
            AQE V+S      VV F K  CP+C   +E+  QL       + +++   SD S+IQ  L + TG +TVP VF+G   IGGC    A+  +G+L+  L E GA+
Sbjct:    1 AQEFVNSKIQPGKVVVFIKPTCPYCRKTQEILSQLPFKQGLLEFVDITATSDMSEIQDYLQQLTGARTVPRVFLGKDCIGGCSDLIAMQEKGELLARLKEMGAL 104          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GRXS8_ARATH (Monothiol glutaredoxin-S8 OS=Arabidopsis thaliana GN=GRXS8 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.745e-11
Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:   78 LPKAQETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 377
            + K Q+ +S  SVV FS   C    + + LF  LGV     EL++ + G +I+ ALA+     TVP VFIGG+ +GG +   +LH    L+P+L   GA+
Sbjct:    1 MEKIQKMISEKSVVIFSNNSCCMSHTIKTLFLDLGVNPTIYELDEINRGKEIEYALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLIPMLKRFGAL 100          
BLAST of CF834962 vs. ExPASy Swiss-Prot
Match: GRXS8_ORYSJ (Monothiol glutaredoxin-S8 OS=Oryza sativa subsp. japonica GN=GRXS8 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.891e-11
Identity = 40/112 (35.71%), Postives = 60/112 (53.57%), Query Frame = 3
Query:   78 LPKAQETVSSNSVVAFSKTFCPFCVSGRELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKT------------VPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 377
            + +     S  +VV FSK+ C    +   L ++LGV  + +EL++E  G+D+++ALA      T            VP VFIGG+ +G  D   +LH  G LVPLL +AGA+
Sbjct:    1 MDRVTRLASQKAVVVFSKSSCGMSHAVTRLLRELGVDARVVELDEEPAGADMENALAGMLLAGTAANGGGRGRGVVVPTVFIGGRLVGSTDRVMSLHVAGGLVPLLRDAGAL 112          
The following BLAST results are available for this feature:
BLAST of CF834962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
GRXC5_ORYSJ5.778e-1239.81Putative glutaredoxin-C5 OS=Oryza sativa subsp. ja... [more]
GRXC9_ORYSJ7.546e-1238.60Glutaredoxin-C9 OS=Oryza sativa subsp. japonica GN... [more]
YZ73_CAEEL9.855e-1234.23Uncharacterized monothiol glutaredoxin F10D7.3 OS=... [more]
GRXS4_ARATH9.855e-1239.00Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana ... [more]
GRXS7_ARATH1.681e-1138.00Monothiol glutaredoxin-S7 OS=Arabidopsis thaliana ... [more]
GRXS5_ARATH1.681e-1140.63Monothiol glutaredoxin-S5 OS=Arabidopsis thaliana ... [more]
GRXC3_ORYSJ2.195e-1137.84Glutaredoxin-C3 OS=Oryza sativa subsp. japonica GN... [more]
GLRX1_RABIT2.867e-1138.46Glutaredoxin-1 OS=Oryctolagus cuniculus GN=GLRX PE... [more]
GRXS8_ARATH3.745e-1138.00Monothiol glutaredoxin-S8 OS=Arabidopsis thaliana ... [more]
GRXS8_ORYSJ4.891e-1135.71Monothiol glutaredoxin-S8 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834962 ID=CF834962; Name=CF834962; organism=Citrus sinensis; type=EST; length=605bp
TACATCATATAGGATTTGAAGNTNATTTAGGGTTTGTGAGATTTCCCCTC
AAAGACAAAGAAGACACAGAAATGGCTTTGCCCAAGGCCCAGGAAACCGT
TTCCTCCAATTCCGTCGTCGCTTTCAGCAAAACGTTTTGTCCGTTCTGCG
TGAGTGGCAGAGAGCTGTTTCAGCAACTCGGAGTCACTTTCAAGGCCATT
GAACTGAACAAAGAAAGTGATGGAAGTGACATTCAATCAGCTCTAGCTGA
GTGGACTGGACAGAAAACTGTTCCAAATGTCTTCATCGGAGGGAAACACA
TTGGTGGCTGCGATTCAACTACTGCACTGCACAGGGAAGGGAAGCTGGTT
CCTCTGCTCACTGAAGCTGGAGCTGTGGGCAAGACATCTGCCTGATGGAT
GGCTATTGTCTGCCTGTTAATTCTAGTAATAAATAAAGAATGTGTTGGTA
GTGCTTAATCTGTCTGAATTAAACATGAAATTATGCTTATTTGAGTAATT
TCCAATGCACTTTTTTGTTCAGTTTCTGTTTTATGTTGAAATCTGTATGA
ATTTTATCAGATTTTTCATCTACTATATCCATGTAGAGTCATTTCTACTG
TAAAA
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