CF834966

Overview
NameCF834966
Unique NameCF834966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA14_ARATH (Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.666e-50
Identity = 100/158 (63.29%), Postives = 122/158 (77.22%), Query Frame = -2
Query:  294 AKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGAL-FIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN 764
            AKAQVVGWPP+R++RKN +A       E     G G + F+KVSMDGAPYLRKVDL+ YT+Y +LS AL KMFS FT+G  G+      + ++ESK+ DLL+ SEYV +YEDKDGDWMLVGDVPW MF++SCKRL+IMKGS+AIGLAPRAMEK K R+
Sbjct:   73 AKAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMI--DFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEKFKNRS 228          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSJ (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. japonica GN=IAA5 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.842e-49
Identity = 93/155 (60.00%), Postives = 118/155 (76.13%), Query Frame = -2
Query:  306 AAKAQVVGWPPIRSFRKNSLATT-SKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKS 767
            AAKAQVVGWPP+R++RKN+LA + SK   E  G    G L++KVSMDGAPYLRKVDL+ Y++Y +LS ALEKMFSCF  GQ G  ++  R+ L+     D L   EYVLTYEDKD DWMLVGD+PW++F   C++LKIM+GSDA G+APR++E+S
Sbjct:  113 AAKAQVVGWPPVRNYRKNTLAASASKGKGEDKGTAEGGPLYVKVSMDGAPYLRKVDLKMYSSYEDLSMALEKMFSCFITGQSGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVGDLPWDLFTTICRKLKIMRGSDAAGIAPRSIEQS 267          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSI (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. indica GN=IAA5 PE=2 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.842e-49
Identity = 93/155 (60.00%), Postives = 118/155 (76.13%), Query Frame = -2
Query:  306 AAKAQVVGWPPIRSFRKNSLATT-SKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKS 767
            AAKAQVVGWPP+R++RKN+LA + SK   E  G    G L++KVSMDGAPYLRKVDL+ Y++Y +LS ALEKMFSCF  GQ G  ++  R+ L+     D L   EYVLTYEDKD DWMLVGD+PW++F   C++LKIM+GSDA G+APR++E+S
Sbjct:  114 AAKAQVVGWPPVRNYRKNTLAASASKGKGEDKGTAEGGPLYVKVSMDGAPYLRKVDLKMYSSYEDLSMALEKMFSCFITGQSGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVGDLPWDLFTTICRKLKIMRGSDAAGIAPRSIEQS 268          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA17_ARATH (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.842e-49
Identity = 98/157 (62.42%), Postives = 121/157 (77.07%), Query Frame = -2
Query:  297 AKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGP-GALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIR 764
            AKAQVVGWPP+RS+RKN + +  K++       GP  A F+KVSMDGAPYLRK+DLR Y +Y ELS+AL  MFS FT+G+ G  E    + ++E KL DL++  +YV +YEDKDGDWMLVGDVPW MF+D+CKRL++MKGSDAIGLAPRAMEK K R
Sbjct:   79 AKAQVVGWPPVRSYRKNVMVSCQKSSG------GPEAAAFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGM-IDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAPRAMEKCKSR 228          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA7_ARATH (Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.927e-48
Identity = 98/161 (60.87%), Postives = 120/161 (74.53%), Query Frame = -2
Query:  309 AKAQVVGWPPIRSFRKNSLAT--TSKNNDEVD-------GKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEK 764
            AKAQVVGWPP+R++RKN +    TS   +E         G    GA  +KVSMDGAPYLRKVDL+ Y +Y +LS AL KMFS FT+G  G+      + ++ESKL +LL+ SEYV +YEDKDGDWMLVGDVPWEMF++SCKRL+IMKGS+A+GLAPRAMEK
Sbjct:   79 AKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMI--DFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEK 237          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA11_ORYSJ (Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica GN=IAA11 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.320e-47
Identity = 97/155 (62.58%), Postives = 115/155 (74.19%), Query Frame = -2
Query:  303 AAKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSK 767
            A KAQVVGWPP+RSFRKN LA   K            A  +KVSMDGAPYLRK+D+  Y +Y ELS A + MF+ FTIG+CGSH+    ++   +KL+D L   EYV TYEDKDGDWMLVGDVPWEMF++SCKRL+IMKGS+AIGLAPRA+EK K
Sbjct:   96 APKAQVVGWPPVRSFRKNVLAEKCK-----------AAALVKVSMDGAPYLRKIDVAMYKSYPELSMAFQNMFTSFTIGKCGSHQ----QLKESNKLRDDL---EYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCK 232          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSJ (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. japonica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.114e-41
Identity = 92/167 (55.09%), Postives = 113/167 (67.66%), Query Frame = -2
Query:  303 AAKAQVVGWPPIRSFRKNSL---ATTSKNNDEVDGK---PGPGA------LFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSK 767
            A KAQ VGWPP+RSFR+N +   +  SK  +E D +   P   A       F+KVSMDGAPYLRKVDL+ Y +Y +LS AL+KMF  FT        A G  M       + ++GS+ V TYEDKDGDWMLVGDVPW+MF++SCKRL+IMKGS+AIGLAPRA +K K
Sbjct:   82 APKAQAVGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANASGSNSSAFVKVSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFT--------ATGNNM-------NEVNGSDAVTTYEDKDGDWMLVGDVPWQMFVESCKRLRIMKGSEAIGLAPRAKDKYK 233          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSI (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.114e-41
Identity = 92/167 (55.09%), Postives = 113/167 (67.66%), Query Frame = -2
Query:  303 AAKAQVVGWPPIRSFRKNSL---ATTSKNNDEVDGK---PGPGA------LFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSK 767
            A KAQ VGWPP+RSFR+N +   +  SK  +E D +   P   A       F+KVSMDGAPYLRKVDL+ Y +Y +LS AL+KMF  FT        A G  M       + ++GS+ V TYEDKDGDWMLVGDVPW+MF++SCKRL+IMKGS+AIGLAPRA +K K
Sbjct:   82 APKAQAVGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANASGSNSSAFVKVSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFT--------ATGNNM-------NEVNGSDAVTTYEDKDGDWMLVGDVPWQMFVESCKRLRIMKGSEAIGLAPRAKDKYK 233          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA15_ORYSJ (Auxin-responsive protein IAA15 OS=Oryza sativa subsp. japonica GN=IAA15 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.257e-38
Identity = 80/149 (53.69%), Postives = 106/149 (71.14%), Query Frame = -2
Query:  318 KAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALE-KMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRA 761
            KA+VVGWPP+R+FRKN+LA  +  +          A F+KV++DGAPYLRKVDL  Y  Y +L +AL+ K FS FTI + G+ E          KL D + G+EYV TYEDKDGDWMLVGDVPW+MF+++C+RL++MK S+A+ LAPR+
Sbjct:   79 KARVVGWPPVRAFRKNALAALAAASSSK-------AKFVKVAVDGAPYLRKVDLEAYRGYDQLLAALQDKFFSHFTIRKLGNEEM---------KLVDAVSGNEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPRS 211          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA1_ORYSJ (Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica GN=IAA1 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.560e-38
Identity = 82/153 (53.59%), Postives = 105/153 (68.63%), Query Frame = -2
Query:  312 AAKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALE-KMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAME 767
            A KA+VVGWPP+RSFRKN+LA                A F+KV++DGAPYLRKVDL  Y+ Y +L  AL+ K FS FTI +             E KL D ++G+EYV TYEDKDGDWMLVGDVPW+MF+++C+RL++MK S+A+ LAPRA +
Sbjct:   72 APKARVVGWPPVRSFRKNALA----------------AKFVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFSHFTIRKFAD---------DERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPRAAQ 199          
The following BLAST results are available for this feature:
BLAST of CF834966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
IAA14_ARATH1.666e-5063.29Auxin-responsive protein IAA14 OS=Arabidopsis thal... [more]
IAA5_ORYSJ1.842e-4960.00Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
IAA5_ORYSI1.842e-4960.00Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
IAA17_ARATH1.842e-4962.42Auxin-responsive protein IAA17 OS=Arabidopsis thal... [more]
IAA7_ARATH5.927e-4860.87Auxin-responsive protein IAA7 OS=Arabidopsis thali... [more]
IAA11_ORYSJ1.320e-4762.58Auxin-responsive protein IAA11 OS=Oryza sativa sub... [more]
IAA13_ORYSJ4.114e-4155.09Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA13_ORYSI4.114e-4155.09Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA15_ORYSJ4.257e-3853.69Auxin-responsive protein IAA15 OS=Oryza sativa sub... [more]
IAA1_ORYSJ5.560e-3853.59Auxin-responsive protein IAA1 OS=Oryza sativa subs... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06H05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834966 ID=CF834966; Name=CF834966; organism=Citrus sinensis; type=EST; length=768bp
TTTTTTTTAACCTTTTAAGATCCCTGTCACTATATAGATATATAACTCCA
CCAATCCTAATTTTCTTAGTATCTTAACATGGTTTTACAACAATCATATC
ATAAACATAGACTTCTTCCAAACTTAAAAAAGTAACACAAACCTCATGTA
AACAAACAGGATACACAACTAAACCACAAACTTGCATCTTGCCCATGCCA
TCCTGTCCTTTTTAACTTTTCATCAACCCAGTCTCCTCCTACCCATGAAA
GGCATGAACTAGAAGGCACCCCATCCCAGCCAGGCATTCACTAGTTCCTG
ATCTTGGATTTTTCCATTGCCCTGGGAGCTAAGCCAATGGCATCAGAACC
TTTCATGATCTTTAATCGCTTGCATGAATCAATAAACATCTCCCACGGCA
CATCCCCAACGAGCATCCAGTCACCATCCTTGTCCTCATATGTAAGCACA
TATTCTGATCCATGCAAAAGATCCTTCAACTTGCTCTCACTCAGCATTTC
CCTCCCTGGTGCTTCATGTGATCCACATTGACCAATTGTAAAGCAACTGA
ACATCTTCTCCAGAGCAGAAGATAGTTCCCCATAATTGGTGTATGTTCTC
AAATCTACCTTCCTCAAATAAGGAGCACCGTCCATGCTAACCTTAATAAA
AAGAGCACCAGGACCTGGTTTTCCATCTACTTCATCATTGTTCTTTGAAG
TGGTTGCCAATGAATTCTTCCTAAATGATCTTATTGGAGGCCAACCCACG
ACCTGTGCCTTGGCAGCA
back to top