CF834966

Overview
NameCF834966
Unique NameCF834966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA4_PEA (Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA4/5 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.029e-37
Identity = 83/145 (57.24%), Postives = 95/145 (65.52%), Query Frame = -2
Query:  330 AKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGL 764
            AKA++VGWPPIRS+RKNSL        E D     G +F+KVSMDGAPYLRK+DLR Y  Y EL  ALE MF   TIG+    E                 GSEY  TYEDKDGDWMLVGDVPW+MF+ SCKRL+IMKG++A GL
Sbjct:   67 AKAKIVGWPPIRSYRKNSL-------HEAD----VGGIFVKVSMDGAPYLRKIDLRVYGGYSELLKALETMFK-LTIGEYSEREG--------------YKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGTEAKGL 185          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: AX22D_PHAAU (Auxin-induced protein 22D OS=Phaseolus aureus GN=AUX22D PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.029e-37
Identity = 78/145 (53.79%), Postives = 96/145 (66.21%), Query Frame = -2
Query:  330 AKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGL 764
            AKAQVVGWPPIRS+RKN++    +   E +G      +++KVSM GAPYLRK+DL+ Y +Y EL  ALE MF C               +  E   ++  +GSEY  TYEDKDGDWMLVGDVPW MF+ SCKRL+IMKGS+A GL
Sbjct:   67 AKAQVVGWPPIRSYRKNNVQQKKEEESEGNG------MYVKVSMAGAPYLRKIDLKVYKSYPELLKALENMFKC---------------IFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIMKGSEAKGL 190          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA3_ARATH (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana GN=IAA3 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.204e-36
Identity = 78/144 (54.17%), Postives = 100/144 (69.44%), Query Frame = -2
Query:  330 KAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGL 761
            KAQ+VGWPP+RS+RKN++ +  KN  E +G+     +++KVSMDGAPYLRK+DL  Y  Y EL  ALE MF  F++G+                 +D   GS++V TYEDKDGDWML+GDVPWEMFI +CKRL+IMKGS+A GL
Sbjct:   62 KAQIVGWPPVRSYRKNNIQS-KKNESEHEGQ----GIYVKVSMDGAPYLRKIDLSCYKGYSELLKALEVMFK-FSVGEYFE--------------RDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRIMKGSEAKGL 185          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: AX22E_PHAAU (Auxin-induced protein 22E OS=Phaseolus aureus GN=AUX22E PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.204e-36
Identity = 80/145 (55.17%), Postives = 96/145 (66.21%), Query Frame = -2
Query:  330 AKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGL 764
            AK QVVGWPPIRSFRKNSL    K  ++ DG      +++KVSM GAPYLRK+DL+ Y +Y EL  AL+ +F C T G+    E                +GSEY  TYEDKDGDWMLVGDVPW MF+ SCKRL+I+KGS+A GL
Sbjct:   77 AKVQVVGWPPIRSFRKNSLQ--QKKVEQGDGT----GMYLKVSMAGAPYLRKIDLKVYKSYPELLKALQNLFKC-TFGEYSEREG--------------YNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIIKGSEAKGL 200          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: AX22B_PHAAU (Auxin-induced protein 22B OS=Phaseolus aureus GN=AUX22B PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.373e-35
Identity = 81/144 (56.25%), Postives = 93/144 (64.58%), Query Frame = -2
Query:  330 KAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGL 761
            KA++VGWPPIRS+RKNS+        E DG      +F+KVSMDGAPYLRKVDL+ Y  Y EL  ALE MF    IG+    E                 GSEY  TYEDKDGDWMLVGDVPW+MF+ SCKRL+IMKGS+A GL
Sbjct:   75 KAKIVGWPPIRSYRKNSV-----QEGEGDG------IFVKVSMDGAPYLRKVDLKVYGGYPELLKALETMFK-LAIGEYSEREG--------------YKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGL 192          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA4_ARATH (Auxin-responsive protein IAA4 OS=Arabidopsis thaliana GN=IAA4 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 4.406e-35
Identity = 77/144 (53.47%), Postives = 95/144 (65.97%), Query Frame = -2
Query:  330 KAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGL 761
            KAQ+VGWPP+RS+RKN++ T  K+  E  G       ++KVSMDGAPYLRK+DL  Y  Y EL  +LE MF  F++G+    E                 GS++V TYEDKDGDWMLVGDVPWEMF+ SCKRL+IMKGS+  GL
Sbjct:   60 KAQIVGWPPVRSYRKNNVQT-KKSESEGQGN------YVKVSMDGAPYLRKIDLTMYKQYPELMKSLENMFK-FSVGEYFEREG--------------YKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLRIMKGSEVKGL 181          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA31_ORYSJ (Auxin-responsive protein IAA31 OS=Oryza sativa subsp. japonica GN=IAA31 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.406e-35
Identity = 81/159 (50.94%), Postives = 101/159 (63.52%), Query Frame = -2
Query:  330 AAKAQVVGWPPIRSFRKNSL---ATTSKNN----------DEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGL 767
            AAKAQVVGWPP+RS+RK+ L    TT+K+            + +   G G LF+KVSMDGAPYLRK+DL+ Y  Y EL  ALE MF CF+ G                     ++ S++ +TYEDKDGD MLVGDVP+EMFI +CKRL+IMKGS+A GL
Sbjct:   49 AAKAQVVGWPPVRSYRKSCLQPTTTTTKSKPPPAAAAAETQQKEDVAGAGGLFVKVSMDGAPYLRKIDLKVYKGYRELREALEAMFLCFSGGAAADAA---------------VNPSDFAVTYEDKDGDLMLVGDVPFEMFISTCKRLRIMKGSEARGL 192          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA23_ORYSJ (Auxin-responsive protein IAA23 OS=Oryza sativa subsp. japonica GN=IAA23 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.814e-35
Identity = 74/148 (50.00%), Postives = 98/148 (66.22%), Query Frame = -2
Query:  321 KAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMF-SCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPR 761
            KA+ VGWPP+R++R+N+L   S             A  +KV++DGAPYLRKVDL  +  Y  L  AL  MF SC  +   G  +  G      +KL DL+ G+EYV TYEDKDGDWMLVGDVPW+MF++SCKR+++MK S+A+ L+PR
Sbjct:   59 KARAVGWPPVRAYRRNALREDSAR-----------AKLVKVAVDGAPYLRKVDLAAHAGYAPLLRALHGMFASCLAVRGGGGGDGEG------TKLVDLVTGAEYVPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMKSSEAVNLSPR 189          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA1_ARATH (Auxin-responsive protein IAA1 OS=Arabidopsis thaliana GN=IAA1 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.200e-32
Identity = 75/142 (52.82%), Postives = 90/142 (63.38%), Query Frame = -2
Query:  339 AKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDA 764
            AK Q+VGWPP+RS RKN+      NN  V         ++KVSMDGAPYLRK+DL+ Y NY EL  ALE MF  FT+G+    E                 GS +V TYEDKDGDWMLVGDVPW+MF  SC++L+IMKGS+A
Sbjct:   52 AKTQIVGWPPVRSNRKNN------NNKNVS--------YVKVSMDGAPYLRKIDLKMYKNYPELLKALENMFK-FTVGEYSEREG--------------YKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCQKLRIMKGSEA 164          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA2_ARATH (Auxin-responsive protein IAA2 OS=Arabidopsis thaliana GN=IAA2 PE=2 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 2.046e-32
Identity = 74/144 (51.39%), Postives = 90/144 (62.50%), Query Frame = -2
Query:  330 KAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGL 761
            K Q+VGWPP+RS RKN+ + +                ++KVSMDGAPYLRK+DL+TY NY EL  ALE MF               + M+ E   ++   GS +V TYEDKDGDWMLVGDVPW+MF  SCKRL+IMKGSDA  L
Sbjct:   58 KTQIVGWPPVRSSRKNNNSVS----------------YVKVSMDGAPYLRKIDLKTYKNYPELLKALENMF---------------KVMIGEYCEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCKRLRIMKGSDAPAL 170          
The following BLAST results are available for this feature:
BLAST of CF834966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
IAA4_PEA8.029e-3757.24Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA... [more]
AX22D_PHAAU8.029e-3753.79Auxin-induced protein 22D OS=Phaseolus aureus GN=A... [more]
IAA3_ARATH5.204e-3654.17Auxin-responsive protein IAA3 OS=Arabidopsis thali... [more]
AX22E_PHAAU5.204e-3655.17Auxin-induced protein 22E OS=Phaseolus aureus GN=A... [more]
AX22B_PHAAU3.373e-3556.25Auxin-induced protein 22B OS=Phaseolus aureus GN=A... [more]
IAA4_ARATH4.406e-3553.47Auxin-responsive protein IAA4 OS=Arabidopsis thali... [more]
IAA31_ORYSJ4.406e-3550.94Auxin-responsive protein IAA31 OS=Oryza sativa sub... [more]
IAA23_ORYSJ9.814e-3550.00Auxin-responsive protein IAA23 OS=Oryza sativa sub... [more]
IAA1_ARATH1.200e-3252.82Auxin-responsive protein IAA1 OS=Arabidopsis thali... [more]
IAA2_ARATH2.046e-3251.39Auxin-responsive protein IAA2 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834966 ID=CF834966; Name=CF834966; organism=Citrus sinensis; type=EST; length=768bp
TTTTTTTTAACCTTTTAAGATCCCTGTCACTATATAGATATATAACTCCA
CCAATCCTAATTTTCTTAGTATCTTAACATGGTTTTACAACAATCATATC
ATAAACATAGACTTCTTCCAAACTTAAAAAAGTAACACAAACCTCATGTA
AACAAACAGGATACACAACTAAACCACAAACTTGCATCTTGCCCATGCCA
TCCTGTCCTTTTTAACTTTTCATCAACCCAGTCTCCTCCTACCCATGAAA
GGCATGAACTAGAAGGCACCCCATCCCAGCCAGGCATTCACTAGTTCCTG
ATCTTGGATTTTTCCATTGCCCTGGGAGCTAAGCCAATGGCATCAGAACC
TTTCATGATCTTTAATCGCTTGCATGAATCAATAAACATCTCCCACGGCA
CATCCCCAACGAGCATCCAGTCACCATCCTTGTCCTCATATGTAAGCACA
TATTCTGATCCATGCAAAAGATCCTTCAACTTGCTCTCACTCAGCATTTC
CCTCCCTGGTGCTTCATGTGATCCACATTGACCAATTGTAAAGCAACTGA
ACATCTTCTCCAGAGCAGAAGATAGTTCCCCATAATTGGTGTATGTTCTC
AAATCTACCTTCCTCAAATAAGGAGCACCGTCCATGCTAACCTTAATAAA
AAGAGCACCAGGACCTGGTTTTCCATCTACTTCATCATTGTTCTTTGAAG
TGGTTGCCAATGAATTCTTCCTAAATGATCTTATTGGAGGCCAACCCACG
ACCTGTGCCTTGGCAGCA
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