CF834966

Overview
NameCF834966
Unique NameCF834966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA12_ARATH (Auxin-responsive protein IAA12 OS=Arabidopsis thaliana GN=IAA12 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.897e-28
Identity = 81/178 (45.51%), Postives = 99/178 (55.62%), Query Frame = -2
Query:  294 AQVVGWPPIRSFRKNSLATTSK----------------NNDE---VDGKPGP---GALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAME-KSKIRN 758
            +QVVGWPPI   R NSL                      NDE   V  K  P   G  F+KV+MDG    RKVD+R +++Y  L+  LE+MF   T   C       RE +   +L D    S++VLTYEDK+GDWMLVGDVPW MFI+S KRL+IM  S+A GLAPR  E K + RN
Sbjct:   68 SQVVGWPPIGLHRMNSLVNNQAMKAARAEEGDGEKKVVKNDELKDVSMKVNPKVQGLGFVKVNMDGVGIGRKVDMRAHSSYENLAQTLEEMFFGMTGTTC-------REKVKPLRLLD--GSSDFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRIMGTSEASGLAPRRQEQKDRQRN 236          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA6_ARATH (Auxin-responsive protein IAA6 OS=Arabidopsis thaliana GN=IAA6 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.518e-27
Identity = 66/143 (46.15%), Postives = 86/143 (60.14%), Query Frame = -2
Query:  333 KAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIG 761
            K+Q VGWPP+ S+R+       KNN+E     G    ++KVSMDG PY+RK+DL +  +Y  L + LE +F C  IG           +  E K        EY++ YEDKD DWMLVGDVPW+MF +SCKRL+I+K SDA G
Sbjct:   68 KSQAVGWPPVCSYRRK------KNNEEASKAIG----YVKVSMDGVPYMRKIDLGSSNSYINLVTVLENLFGCLGIG-----------VAKEGKK------CEYIIIYEDKDRDWMLVGDVPWQMFKESCKRLRIVKRSDATG 183          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA13_ARATH (Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.589e-27
Identity = 82/180 (45.56%), Postives = 101/180 (56.11%), Query Frame = -2
Query:  303 AKAQVVGWPPIRSFRKNSL----ATTSKNNDE------------------VDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMF---SCFTIGQCGSHEAPGREMLSESKLKDLLHGS-EYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSK 764
            + +QVVGWPPI S R NSL    AT S   +E                  V+GK   G  FIKV+MDG    RKVDL  +++Y  L+  LE MF   +  T+G       P R          LL GS E+VLTYEDK+GDWMLVGDVPW MFI+S KRL++MK S+A GLA R  E ++
Sbjct:   73 SSSQVVGWPPIGSHRMNSLVNNQATKSAREEEEAGKKKVKDDEPKDVTKKVNGKVQVG--FIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGLTSQFTKPLR----------LLDGSSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMKTSEANGLAARNQEPNE 240          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA11_ARATH (Auxin-responsive protein IAA11 OS=Arabidopsis thaliana GN=IAA11 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.767e-27
Identity = 73/163 (44.79%), Postives = 94/163 (57.67%), Query Frame = -2
Query:  327 AAKAQVVGWPPIRSFRKNSLATTSK---------------NNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSE-YVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLA 767
            A   QVVGWPPIR++R NS+   +K               N +  D      ++F+KV+MDG P  RK+DL  +  Y  LS+ LE+MF    +G   + E  G     E+ +K L  GS   VLTYEDK+GDWMLVGDVPW MFI S +RL+IMK S+A G A
Sbjct:   84 ATSGQVVGWPPIRTYRMNSMVNQAKASATEDPNLEISQAVNKNRSDSTKMRNSMFVKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGS-RTLETDGH---METPVKILPDGSSGLVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKTSEATGKA 242          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA5_ARATH (Auxin-responsive protein IAA5 OS=Arabidopsis thaliana GN=IAA5 PE=2 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 9.837e-27
Identity = 67/142 (47.18%), Postives = 83/142 (58.45%), Query Frame = -2
Query:  345 AAKAQVVGWPPIRSFR-KNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGS 767
            A K+QVVGWPP+ S+R KNSL  T  +             ++KVS+DGA +LRK+DL  Y  Y +L+SAL+ +F C+                      D L  SE V  YEDKDGDWML GDVPWEMF+ SCKRL+IMK S
Sbjct:   49 AKKSQVVGWPPVCSYRRKNSLERTKSS-------------YVKVSVDGAAFLRKIDLEMYKCYQDLASALQILFGCYI------------------NFDDTLKESECVPIYEDKDGDWMLAGDVPWEMFLGSCKRLRIMKRS 159          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA2_ORYSJ (Auxin-responsive protein IAA2 OS=Oryza sativa subsp. japonica GN=IAA2 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.285e-26
Identity = 62/157 (39.49%), Postives = 90/157 (57.32%), Query Frame = -2
Query:  342 AAKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPG---------------ALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSD 767
            AA A VVGWPP+RSFR+N  +++S ++ +    P                   +F+K++MDG P  RKVDL  Y  Y +LS+A++K+F     G   +  A        +   +++ G EY L YED +GD MLVGDVPW+MFI + KRL+++K SD
Sbjct:   66 AAAAPVVGWPPVRSFRRNLASSSSSSSKQAPPPPSSSPQNGDKASKDGGAEKGMFVKINMDGVPIGRKVDLAAYGGYAQLSAAVDKLFR----GLLAAQSAAADGEADAAAAGEMVGGGEYTLVYEDDEGDRMLVGDVPWQMFIATAKRLRVLKSSD 218          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA16_ORYSJ (Auxin-responsive protein IAA16 OS=Oryza sativa subsp. japonica GN=IAA16 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.423e-25
Identity = 67/169 (39.64%), Postives = 95/169 (56.21%), Query Frame = -2
Query:  303 AQVVGWPPIRSFRKNSLATTSKNNDEVDGKP-------GPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCF-------TIGQCGSHEAPGREMLSESK-LKDLLHGS--EYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSK 758
            A VVGWPP+RSFR+N  +++S +     G+        G  A F+KV+MDG P  RKVDL  +  YGELS+A++++F          T+    +  A G     E + +  LL G   EY L YED +GD MLVGDVPW MFI + +RL++++ SD      RA  + +
Sbjct:   56 APVVGWPPVRSFRRNLASSSSSSKPPRGGRDAAAAATGGKVARFVKVNMDGVPIGRKVDLAAHGGYGELSAAVDRLFRGLLAAQRDPTMATAAAAAAAGESCTGEEEAIAGLLDGGSGEYTLVYEDDEGDQMLVGDVPWNMFIAAARRLRVLRSSDLNASTIRAGSRKR 224          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA18_ORYSJ (Auxin-responsive protein IAA18 OS=Oryza sativa subsp. japonica GN=IAA18 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.398e-25
Identity = 70/158 (44.30%), Postives = 93/158 (58.86%), Query Frame = -2
Query:  324 VVGWPPIRSFRKNSLATTS------KNNDEVDGKPGPGAL---FIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKL-KDLLHGSE-YVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGS----DAIGLAP 752
            VVGWPPIRSFR+N    +S      + NDE D K  P       +K++MDG P  RKVDL+ Y +Y +LSSA+E++F  F   Q     A   E  +E K+   LL G+  Y L YED DGD ML GD+PW++F+ + KRL++M+ S    D IG  P
Sbjct:  168 VVGWPPIRSFRRNLTNGSSFKQSPERQNDEADDKAKPICKKRPLVKINMDGIPIGRKVDLQIYDSYQKLSSAVEELFRGFLEAQKDLSCAESGEQGAEDKIFSGLLDGTGVYTLVYEDNDGDRMLAGDIPWKVFVSTVKRLRVMRRSELPHDMIGADP 325          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA26_ARATH (Auxin-responsive protein IAA26 OS=Arabidopsis thaliana GN=IAA26 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 7.050e-25
Identity = 65/157 (41.40%), Postives = 88/157 (56.05%), Query Frame = -2
Query:  342 AKAQVVGWPPIRSFRKNSLATTSKN-----------NDEVDGKPG----PGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGS-EYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSD 764
            A   VVGWPP+RSFRKN  +T+S             N   DG+         +F+K++MDG P  RKVDL  Y +Y +LS  ++K+F      Q    +  G E      +  LL G  E+ LTYED +GD MLVGDVPW+MF+ S KRL+++K S+
Sbjct:  100 APGPVVGWPPVRSFRKNLASTSSSKLGNESSHGGQINKSDDGEKQVETKKEGMFVKINMDGVPIGRKVDLNAYNSYEQLSFVVDKLFRGLLAAQRDISDGQGEE----KPIIGLLDGKGEFTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKSSE 252          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA15_ARATH (Auxin-responsive protein IAA15 OS=Arabidopsis thaliana GN=IAA15 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.571e-24
Identity = 62/142 (43.66%), Postives = 85/142 (59.86%), Query Frame = -2
Query:  330 QVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGL 755
            Q+VGWPP+ + RK    T  +              ++KV++DGA YLRKVDL  Y  YG+L +ALE MF               + +++  ++ +L    E+V TYEDKDGD MLVGDVPW MF++SCKR+++MK  DAIGL
Sbjct:   70 QLVGWPPVATARK----TVRRK-------------YVKVALDGAAYLRKVDLGMYDCYGQLFTALENMF---------------QGIITICRVTELERKGEFVATYEDKDGDLMLVGDVPWMMFVESCKRMRLMKTGDAIGL 179          
The following BLAST results are available for this feature:
BLAST of CF834966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
IAA12_ARATH8.897e-2845.51Auxin-responsive protein IAA12 OS=Arabidopsis thal... [more]
IAA6_ARATH1.518e-2746.15Auxin-responsive protein IAA6 OS=Arabidopsis thali... [more]
IAA13_ARATH2.589e-2745.56Auxin-responsive protein IAA13 OS=Arabidopsis thal... [more]
IAA11_ARATH5.767e-2744.79Auxin-responsive protein IAA11 OS=Arabidopsis thal... [more]
IAA5_ARATH9.837e-2747.18Auxin-responsive protein IAA5 OS=Arabidopsis thali... [more]
IAA2_ORYSJ1.285e-2639.49Auxin-responsive protein IAA2 OS=Oryza sativa subs... [more]
IAA16_ORYSJ2.423e-2539.64Auxin-responsive protein IAA16 OS=Oryza sativa sub... [more]
IAA18_ORYSJ5.398e-2544.30Auxin-responsive protein IAA18 OS=Oryza sativa sub... [more]
IAA26_ARATH7.050e-2541.40Auxin-responsive protein IAA26 OS=Arabidopsis thal... [more]
IAA15_ARATH1.571e-2443.66Auxin-responsive protein IAA15 OS=Arabidopsis thal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06H05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834966 ID=CF834966; Name=CF834966; organism=Citrus sinensis; type=EST; length=768bp
TTTTTTTTAACCTTTTAAGATCCCTGTCACTATATAGATATATAACTCCA
CCAATCCTAATTTTCTTAGTATCTTAACATGGTTTTACAACAATCATATC
ATAAACATAGACTTCTTCCAAACTTAAAAAAGTAACACAAACCTCATGTA
AACAAACAGGATACACAACTAAACCACAAACTTGCATCTTGCCCATGCCA
TCCTGTCCTTTTTAACTTTTCATCAACCCAGTCTCCTCCTACCCATGAAA
GGCATGAACTAGAAGGCACCCCATCCCAGCCAGGCATTCACTAGTTCCTG
ATCTTGGATTTTTCCATTGCCCTGGGAGCTAAGCCAATGGCATCAGAACC
TTTCATGATCTTTAATCGCTTGCATGAATCAATAAACATCTCCCACGGCA
CATCCCCAACGAGCATCCAGTCACCATCCTTGTCCTCATATGTAAGCACA
TATTCTGATCCATGCAAAAGATCCTTCAACTTGCTCTCACTCAGCATTTC
CCTCCCTGGTGCTTCATGTGATCCACATTGACCAATTGTAAAGCAACTGA
ACATCTTCTCCAGAGCAGAAGATAGTTCCCCATAATTGGTGTATGTTCTC
AAATCTACCTTCCTCAAATAAGGAGCACCGTCCATGCTAACCTTAATAAA
AAGAGCACCAGGACCTGGTTTTCCATCTACTTCATCATTGTTCTTTGAAG
TGGTTGCCAATGAATTCTTCCTAAATGATCTTATTGGAGGCCAACCCACG
ACCTGTGCCTTGGCAGCA
back to top