CF834966

Overview
NameCF834966
Unique NameCF834966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA7_ORYSJ (Auxin-responsive protein IAA7 OS=Oryza sativa subsp. japonica GN=IAA7 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.570e-24
Identity = 66/146 (45.21%), Postives = 92/146 (63.01%), Query Frame = -2
Query:  342 VVGWPPIRSFRKNSLATTSKNNDEV-DGKPGPGAL------FIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSES-KLKDLLHGS-EYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSD 752
            VVGWPP+R+FR+N LAT+SK + E+ +GK    A       FIK++MDG P  RK+DL  + +Y +LS A++K+F      Q     A  ++   E   +  LL G+ EY L YED +GD +LVGDVPW MF+ S KRL+++K SD
Sbjct:  139 VVGWPPVRTFRRN-LATSSKASLELQNGKKAAKAEEIKRAPFIKINMDGVPIGRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDGTGEYTLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSD 283          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA26_ORYSJ (Auxin-responsive protein IAA26 OS=Oryza sativa subsp. japonica GN=IAA26 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.795e-24
Identity = 60/126 (47.62%), Postives = 73/126 (57.94%), Query Frame = -2
Query:  318 DGKPGPG------ALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRA 677
            +G P P       A F+KVSMDG PYLRKVD+  Y +Y EL  AL  MF C TIG                 L D     E+ + YED DGDWMLVGDVPWEMF+ SCKR+++M+  +A GL+  A
Sbjct:   32 NGHPPPSSSMIQAAYFVKVSMDGTPYLRKVDVAAYGDYLELVEALNDMFYCSTIG-----------------LMDGYGEWEHAVVYEDGDGDWMLVGDVPWEMFVSSCKRMRVMRACEARGLSSNA 140          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA6_ORYSJ (Auxin-responsive protein IAA6 OS=Oryza sativa subsp. japonica GN=IAA6 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 63/152 (41.45%), Postives = 91/152 (59.87%), Query Frame = -2
Query:  342 AKAQVVGWPPIRSFRKNSLATTSKN------NDEVDGKPGPGAL---FIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKL-KDLLHGS-EYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSD 764
            A A VVGWPPIRSFR+N  +++S        ND  + K          +K++MDG P  RK+DL  Y +Y  LSSA++++F  F   Q     A   +  ++ K+   LL GS EY L YED +GD MLVGDVPW++F+ + KRL++++ S+
Sbjct:  172 AAAPVVGWPPIRSFRRNLASSSSSKHSPEPQNDNANAKVTLTCKKNPLVKINMDGIPIGRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTLVYEDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSE 323          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA10_ARATH (Auxin-responsive protein IAA10 OS=Arabidopsis thaliana GN=IAA10 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.470e-22
Identity = 65/172 (37.79%), Postives = 88/172 (51.16%), Query Frame = -2
Query:  330 AAKAQVVGWPPIRSFRKNSLAT-------------------------TSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGS-EYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGL 767
            A +   VGWPP+R++R NSL                            +KN+D    K    ++ +KV+MDG    RKVDL    +Y  L   L+ MF         S+   G + + E+    LL GS EY++TY+DKDGDWMLVGDVPW+MF+ S  RL+IMK S   G+
Sbjct:   89 ATRQVAVGWPPLRTYRINSLVNQAKSLATEGGLSSGIQKETTKSVVVAAKNDDACFIKSSRTSMLVKVTMDGVIIGRKVDLNALDSYAALEKTLDLMFFQIPSPVTRSN-TQGYKTIKETCTSKLLDGSSEYIITYQDKDGDWMLVGDVPWQMFLGSVTRLRIMKTSIGAGV 259          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA18_ARATH (Auxin-responsive protein IAA18 OS=Arabidopsis thaliana GN=IAA18 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 4.277e-22
Identity = 63/162 (38.89%), Postives = 88/162 (54.32%), Query Frame = -2
Query:  342 AKAQVVGWPPIRSFRKNSLATTSKN--------------NDEVDGKPGP------GALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGS-EYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSD 764
            A   VVGWPP+RSFRKN  + +S                N + D           G +F+K++M G P  RKVDL  + +Y +LS  ++K+F      Q    + P   +  E  +  LL G+ EY LTYED +GD MLVGDVPW+MF+ S KRL+++K S+
Sbjct:   93 APGPVVGWPPVRSFRKNLASGSSSKLGNDSTTSNGVTLKNQKCDAAAKTTEPKRQGGMFVKINMYGVPIGRKVDLSAHNSYEQLSFTVDKLFRGLLAAQ---RDFPS-SIEDEKPITGLLDGNGEYTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKTSE 250          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA28_ARATH (Auxin-responsive protein IAA28 OS=Arabidopsis thaliana GN=IAA28 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.772e-21
Identity = 59/148 (39.86%), Postives = 85/148 (57.43%), Query Frame = -2
Query:  321 AQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGA--LFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPR 758
            A VVGWPP+RS R+N    T++  +E+  K       L++K++M+G P  RKV+L  Y NY +LS A++++FS                   +    DL    +Y L YED +GD +LVGDVPWEMF+ + KRL ++K S A  L+PR
Sbjct:   47 APVVGWPPVRSSRRN---LTAQLKEEMKKKESDEEKELYVKINMEGVPIGRKVNLSAYNNYQQLSHAVDQLFS-------------------KKDSWDL--NRQYTLVYEDTEGDKVLVGDVPWEMFVSTVKRLHVLKTSHAFSLSPR 170          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA25_ORYSJ (Auxin-responsive protein IAA25 OS=Oryza sativa subsp. japonica GN=IAA25 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.376e-20
Identity = 60/155 (38.71%), Postives = 85/155 (54.84%), Query Frame = -2
Query:  357 AAKAQVVGWPPIRSFRKNSLATTSKNNDEVDGK------PGPGA------------LFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKI 767
            A+ AQ+VGWPP+R+FRKN       + D++  K       G G+            +F+KV+++G    RK+DL+ + +Y  LS AL+ MF  F      + +   ++M   SK +       YVL YED +GD MLVGDVPWE+FI S KRL I
Sbjct:   88 ASSAQLVGWPPVRAFRKNLSTPKPADADDLMNKVKLCSDEGHGSRCAAQERRSSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFLSDGIATRDNELQQMEEGSKKR-------YVLVYEDNEGDRMLVGDVPWELFIASVKRLYI 235          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA22_ORYSJ (Auxin-responsive protein IAA22 OS=Oryza sativa subsp. japonica GN=IAA22 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.143e-17
Identity = 51/144 (35.42%), Postives = 74/144 (51.39%), Query Frame = -2
Query:  390 AAKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGP------------------GALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWE 767
            A+ AQ+VGWPP+R+FRKN       + D++  K  P                    +F+KV+++G    RK+DL+ + +Y  LS AL+ MF  F      + +   + M   SK +       YVL YED +GD MLVGDVPW+
Sbjct:   36 ASSAQLVGWPPVRTFRKNLSTPKPADADDLMNKMKPCSDEGHGSRDAAQERRPSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFLSDGIATRDNELQRMEEGSKKR-------YVLVYEDNEGDRMLVGDVPWD 172          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA9_ORYSJ (Auxin-responsive protein IAA9 OS=Oryza sativa subsp. japonica GN=IAA9 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.205e-16
Identity = 54/138 (39.13%), Postives = 71/138 (51.45%), Query Frame = -2
Query:  354 KAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEY--VLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIM 761
            K  VVGWPP+ S R+                   GA ++KV  +G    RKVDL  +++Y EL++ L +MF             P  +   E K+ +  HG     V+TYED DGDWMLVGDVPW+ F  S KRLKI+
Sbjct:   73 KKTVVGWPPVSSARRAC----------------GGANYVKVKKEGDAIGRKVDLALHSSYDELAATLARMF-------------PTNDHQGEKKMANDDHGDAAGPVVTYEDGDGDWMLVGDVPWDDFARSVKRLKIL 181          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA31_ARATH (Auxin-responsive protein IAA31 OS=Arabidopsis thaliana GN=IAA31 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.205e-16
Identity = 49/133 (36.84%), Postives = 72/133 (54.14%), Query Frame = -2
Query:  351 WPPIRSFRKNSLATTS--KNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMK 743
            WPPI+S  +++L      +  D+        +LF+KV M+G P  RK+DL  ++ Y  L   L  MF    I  CG+ +                    +VLTYEDKDGDWM+VGD+PW+MF+++ +RLKI +
Sbjct:   48 WPPIKSRLRDTLKGRRLLRRGDDT-------SLFVKVYMEGVPIGRKLDLCVFSGYESLLENLSHMFDTSII--CGNRDR-----------------KHHVLTYEDKDGDWMMVGDIPWDMFLETVRRLKITR 154          
The following BLAST results are available for this feature:
BLAST of CF834966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
IAA7_ORYSJ4.570e-2445.21Auxin-responsive protein IAA7 OS=Oryza sativa subs... [more]
IAA26_ORYSJ7.795e-2447.62Auxin-responsive protein IAA26 OS=Oryza sativa sub... [more]
IAA6_ORYSJ1.018e-2341.45Auxin-responsive protein IAA6 OS=Oryza sativa subs... [more]
IAA10_ARATH1.470e-2237.79Auxin-responsive protein IAA10 OS=Arabidopsis thal... [more]
IAA18_ARATH4.277e-2238.89Auxin-responsive protein IAA18 OS=Arabidopsis thal... [more]
IAA28_ARATH2.772e-2139.86Auxin-responsive protein IAA28 OS=Arabidopsis thal... [more]
IAA25_ORYSJ1.376e-2038.71Auxin-responsive protein IAA25 OS=Oryza sativa sub... [more]
IAA22_ORYSJ4.143e-1735.42Auxin-responsive protein IAA22 OS=Oryza sativa sub... [more]
IAA9_ORYSJ1.205e-1639.13Auxin-responsive protein IAA9 OS=Oryza sativa subs... [more]
IAA31_ARATH1.205e-1636.84Auxin-responsive protein IAA31 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834966 ID=CF834966; Name=CF834966; organism=Citrus sinensis; type=EST; length=768bp
TTTTTTTTAACCTTTTAAGATCCCTGTCACTATATAGATATATAACTCCA
CCAATCCTAATTTTCTTAGTATCTTAACATGGTTTTACAACAATCATATC
ATAAACATAGACTTCTTCCAAACTTAAAAAAGTAACACAAACCTCATGTA
AACAAACAGGATACACAACTAAACCACAAACTTGCATCTTGCCCATGCCA
TCCTGTCCTTTTTAACTTTTCATCAACCCAGTCTCCTCCTACCCATGAAA
GGCATGAACTAGAAGGCACCCCATCCCAGCCAGGCATTCACTAGTTCCTG
ATCTTGGATTTTTCCATTGCCCTGGGAGCTAAGCCAATGGCATCAGAACC
TTTCATGATCTTTAATCGCTTGCATGAATCAATAAACATCTCCCACGGCA
CATCCCCAACGAGCATCCAGTCACCATCCTTGTCCTCATATGTAAGCACA
TATTCTGATCCATGCAAAAGATCCTTCAACTTGCTCTCACTCAGCATTTC
CCTCCCTGGTGCTTCATGTGATCCACATTGACCAATTGTAAAGCAACTGA
ACATCTTCTCCAGAGCAGAAGATAGTTCCCCATAATTGGTGTATGTTCTC
AAATCTACCTTCCTCAAATAAGGAGCACCGTCCATGCTAACCTTAATAAA
AAGAGCACCAGGACCTGGTTTTCCATCTACTTCATCATTGTTCTTTGAAG
TGGTTGCCAATGAATTCTTCCTAAATGATCTTATTGGAGGCCAACCCACG
ACCTGTGCCTTGGCAGCA
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