CF834966

Overview
NameCF834966
Unique NameCF834966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA4_ORYSJ (Auxin-responsive protein IAA4 OS=Oryza sativa subsp. japonica GN=IAA4 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.333e-15
Identity = 50/135 (37.04%), Postives = 71/135 (52.59%), Query Frame = -2
Query:  351 WPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSC----FTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMK 743
            WPPI+ F +++L   S       G      LF+KV M+G P  RK+DL     Y  L   L  MF        + +C   + PG++             + +VLTYED+DGDWM+VGDVPWE+F+ S K+L+I +
Sbjct:   81 WPPIKPFLRSALQKASAAGG--GGARRRRTLFVKVYMEGVPIGRKLDLLLLDGYDSLLIKLCHMFKTPITYADVMEC-HQQVPGQK-------------AAHVLTYEDQDGDWMMVGDVPWELFLSSVKKLRIAR 199          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA4_ORYSI (Auxin-responsive protein IAA4 OS=Oryza sativa subsp. indica GN=IAA4 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.333e-15
Identity = 50/135 (37.04%), Postives = 71/135 (52.59%), Query Frame = -2
Query:  351 WPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSC----FTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMK 743
            WPPI+ F +++L   S       G      LF+KV M+G P  RK+DL     Y  L   L  MF        + +C   + PG++             + +VLTYED+DGDWM+VGDVPWE+F+ S K+L+I +
Sbjct:   81 WPPIKPFLRSALQKASAAGG--GGARRRRTLFVKVYMEGVPIGRKLDLLLLDGYDSLLIKLCHMFKTPITYADVMEC-HQQVPGQK-------------AAHVLTYEDQDGDWMMVGDVPWELFLSSVKKLRIAR 199          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA30_ARATH (Auxin-responsive protein IAA30 OS=Arabidopsis thaliana GN=IAA30 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.333e-15
Identity = 43/103 (41.75%), Postives = 62/103 (60.19%), Query Frame = -2
Query:  351 GALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMK 659
            G+ ++KV+M+G P  RK+DL +   Y +L + L+ MF+   +       A   +M SE           +VLTY DK+GDWM+VGDVPWEMF+ S +RLKI +
Sbjct:   81 GSFYVKVNMEGVPIGRKIDLLSLNGYHDLITTLDYMFNASILW------AEEEDMCSEKS---------HVLTYADKEGDWMMVGDVPWEMFLSSVRRLKISR 168          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA20_ARATH (Auxin-responsive protein IAA20 OS=Arabidopsis thaliana GN=IAA20 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.969e-15
Identity = 39/105 (37.14%), Postives = 63/105 (60.00%), Query Frame = -2
Query:  345 GALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGS 659
            G+ ++KV+M+G P  RK+DL +   Y +L   L+ MF+   +                ++ +D+ +   +VLTY DK+GDWM+VGDVPWEMF+ + +RLKI + +
Sbjct:   83 GSFYVKVNMEGVPIGRKIDLMSLNGYRDLIRTLDFMFNASILW---------------AEEEDMCNEKSHVLTYADKEGDWMMVGDVPWEMFLSTVRRLKISRAN 172          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA8_ORYSJ (Auxin-responsive protein IAA8 OS=Oryza sativa subsp. japonica GN=IAA8 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.064e-15
Identity = 50/130 (38.46%), Postives = 70/130 (53.85%), Query Frame = -2
Query:  342 KNSLATTSKNNDEVDGKPGPG---ALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMF-SCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSD 719
            ++SL T +   D   G  G G   +LF+KV M+G P  RK+DL     Y  L + L  MF +  T   C       R+        + +H   +VLTYED++GDWM+ GDVPWE+F+ S KRL+I +  D
Sbjct:   79 RSSLTTATVTADRGGGGGGHGRRRSLFVKVYMEGVPIGRKLDLLPLDGYKGLVARLASMFRASITYHHCH------RQFAVVGMKTNKVH---HVLTYEDQEGDWMMAGDVPWELFLTSVKRLRIARADD 199          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA20_ORYSJ (Auxin-responsive protein IAA20 OS=Oryza sativa subsp. japonica GN=IAA20 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.599e-14
Identity = 49/136 (36.03%), Postives = 65/136 (47.79%), Query Frame = -2
Query:  354 KAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIM 761
            + ++VGWPP++   +             DG  G G  ++KV M+G    RK+DL    +Y EL   L  MF   +  Q   H+   R                Y +TYED +GDWM VGDVPWE F  S KRLKI+
Sbjct:   76 RRKLVGWPPVKCLHRRR-----------DGGCGGG--YVKVKMEGLAIGRKLDLSILGSYAELLDTLHLMFP--STNQEDGHDRRRRH--------------PYAVTYEDGEGDWMQVGDVPWEAFAKSVKRLKIL 182          
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA27_ORYSJ (Auxin-responsive protein IAA27 OS=Oryza sativa subsp. japonica GN=IAA27 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.740e-13
Identity = 48/118 (40.68%), Postives = 59/118 (50.00%), Query Frame = -2
Query:  300 LFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKI 653
            +F KV MDG    RK++LR + NY  L   L KM   F      S    G E        D     E++  YED +GD MLVGDVPWE+F+ S KRL I K       APR  E ++I
Sbjct:   27 MFAKVHMDGYKVGRKINLRAHRNYDSLRRVLTKMTHNFFCPADYSSTNKGEE--------DCAKSDEFIFLYEDFEGDRMLVGDVPWELFLASAKRLYIAKNP-----APRNKEHAEI 131          
The following BLAST results are available for this feature:
BLAST of CF834966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
IAA4_ORYSJ1.333e-1537.04Auxin-responsive protein IAA4 OS=Oryza sativa subs... [more]
IAA4_ORYSI1.333e-1537.04Auxin-responsive protein IAA4 OS=Oryza sativa subs... [more]
IAA30_ARATH1.333e-1541.75Auxin-responsive protein IAA30 OS=Arabidopsis thal... [more]
IAA20_ARATH2.969e-1537.14Auxin-responsive protein IAA20 OS=Arabidopsis thal... [more]
IAA8_ORYSJ5.064e-1538.46Auxin-responsive protein IAA8 OS=Oryza sativa subs... [more]
IAA20_ORYSJ5.599e-1436.03Auxin-responsive protein IAA20 OS=Oryza sativa sub... [more]
IAA27_ORYSJ4.740e-1340.68Auxin-responsive protein IAA27 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834966 ID=CF834966; Name=CF834966; organism=Citrus sinensis; type=EST; length=768bp
TTTTTTTTAACCTTTTAAGATCCCTGTCACTATATAGATATATAACTCCA
CCAATCCTAATTTTCTTAGTATCTTAACATGGTTTTACAACAATCATATC
ATAAACATAGACTTCTTCCAAACTTAAAAAAGTAACACAAACCTCATGTA
AACAAACAGGATACACAACTAAACCACAAACTTGCATCTTGCCCATGCCA
TCCTGTCCTTTTTAACTTTTCATCAACCCAGTCTCCTCCTACCCATGAAA
GGCATGAACTAGAAGGCACCCCATCCCAGCCAGGCATTCACTAGTTCCTG
ATCTTGGATTTTTCCATTGCCCTGGGAGCTAAGCCAATGGCATCAGAACC
TTTCATGATCTTTAATCGCTTGCATGAATCAATAAACATCTCCCACGGCA
CATCCCCAACGAGCATCCAGTCACCATCCTTGTCCTCATATGTAAGCACA
TATTCTGATCCATGCAAAAGATCCTTCAACTTGCTCTCACTCAGCATTTC
CCTCCCTGGTGCTTCATGTGATCCACATTGACCAATTGTAAAGCAACTGA
ACATCTTCTCCAGAGCAGAAGATAGTTCCCCATAATTGGTGTATGTTCTC
AAATCTACCTTCCTCAAATAAGGAGCACCGTCCATGCTAACCTTAATAAA
AAGAGCACCAGGACCTGGTTTTCCATCTACTTCATCATTGTTCTTTGAAG
TGGTTGCCAATGAATTCTTCCTAAATGATCTTATTGGAGGCCAACCCACG
ACCTGTGCCTTGGCAGCA
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