CF834966
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA4_ORYSJ (Auxin-responsive protein IAA4 OS=Oryza sativa subsp. japonica GN=IAA4 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.333e-15 Identity = 50/135 (37.04%), Postives = 71/135 (52.59%), Query Frame = -2 Query: 351 WPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSC----FTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMK 743 WPPI+ F +++L S G LF+KV M+G P RK+DL Y L L MF + +C + PG++ + +VLTYED+DGDWM+VGDVPWE+F+ S K+L+I + Sbjct: 81 WPPIKPFLRSALQKASAAGG--GGARRRRTLFVKVYMEGVPIGRKLDLLLLDGYDSLLIKLCHMFKTPITYADVMEC-HQQVPGQK-------------AAHVLTYEDQDGDWMMVGDVPWELFLSSVKKLRIAR 199
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA4_ORYSI (Auxin-responsive protein IAA4 OS=Oryza sativa subsp. indica GN=IAA4 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.333e-15 Identity = 50/135 (37.04%), Postives = 71/135 (52.59%), Query Frame = -2 Query: 351 WPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSC----FTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMK 743 WPPI+ F +++L S G LF+KV M+G P RK+DL Y L L MF + +C + PG++ + +VLTYED+DGDWM+VGDVPWE+F+ S K+L+I + Sbjct: 81 WPPIKPFLRSALQKASAAGG--GGARRRRTLFVKVYMEGVPIGRKLDLLLLDGYDSLLIKLCHMFKTPITYADVMEC-HQQVPGQK-------------AAHVLTYEDQDGDWMMVGDVPWELFLSSVKKLRIAR 199
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA30_ARATH (Auxin-responsive protein IAA30 OS=Arabidopsis thaliana GN=IAA30 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.333e-15 Identity = 43/103 (41.75%), Postives = 62/103 (60.19%), Query Frame = -2 Query: 351 GALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMK 659 G+ ++KV+M+G P RK+DL + Y +L + L+ MF+ + A +M SE +VLTY DK+GDWM+VGDVPWEMF+ S +RLKI + Sbjct: 81 GSFYVKVNMEGVPIGRKIDLLSLNGYHDLITTLDYMFNASILW------AEEEDMCSEKS---------HVLTYADKEGDWMMVGDVPWEMFLSSVRRLKISR 168
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA20_ARATH (Auxin-responsive protein IAA20 OS=Arabidopsis thaliana GN=IAA20 PE=2 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 2.969e-15 Identity = 39/105 (37.14%), Postives = 63/105 (60.00%), Query Frame = -2 Query: 345 GALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGS 659 G+ ++KV+M+G P RK+DL + Y +L L+ MF+ + ++ +D+ + +VLTY DK+GDWM+VGDVPWEMF+ + +RLKI + + Sbjct: 83 GSFYVKVNMEGVPIGRKIDLMSLNGYRDLIRTLDFMFNASILW---------------AEEEDMCNEKSHVLTYADKEGDWMMVGDVPWEMFLSTVRRLKISRAN 172
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA8_ORYSJ (Auxin-responsive protein IAA8 OS=Oryza sativa subsp. japonica GN=IAA8 PE=2 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 5.064e-15 Identity = 50/130 (38.46%), Postives = 70/130 (53.85%), Query Frame = -2 Query: 342 KNSLATTSKNNDEVDGKPGPG---ALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMF-SCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSD 719 ++SL T + D G G G +LF+KV M+G P RK+DL Y L + L MF + T C R+ + +H +VLTYED++GDWM+ GDVPWE+F+ S KRL+I + D Sbjct: 79 RSSLTTATVTADRGGGGGGHGRRRSLFVKVYMEGVPIGRKLDLLPLDGYKGLVARLASMFRASITYHHCH------RQFAVVGMKTNKVH---HVLTYEDQEGDWMMAGDVPWELFLTSVKRLRIARADD 199
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA20_ORYSJ (Auxin-responsive protein IAA20 OS=Oryza sativa subsp. japonica GN=IAA20 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.599e-14 Identity = 49/136 (36.03%), Postives = 65/136 (47.79%), Query Frame = -2 Query: 354 KAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIM 761 + ++VGWPP++ + DG G G ++KV M+G RK+DL +Y EL L MF + Q H+ R Y +TYED +GDWM VGDVPWE F S KRLKI+ Sbjct: 76 RRKLVGWPPVKCLHRRR-----------DGGCGGG--YVKVKMEGLAIGRKLDLSILGSYAELLDTLHLMFP--STNQEDGHDRRRRH--------------PYAVTYEDGEGDWMQVGDVPWEAFAKSVKRLKIL 182
BLAST of CF834966 vs. ExPASy Swiss-Prot
Match: IAA27_ORYSJ (Auxin-responsive protein IAA27 OS=Oryza sativa subsp. japonica GN=IAA27 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.740e-13 Identity = 48/118 (40.68%), Postives = 59/118 (50.00%), Query Frame = -2 Query: 300 LFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKI 653 +F KV MDG RK++LR + NY L L KM F S G E D E++ YED +GD MLVGDVPWE+F+ S KRL I K APR E ++I Sbjct: 27 MFAKVHMDGYKVGRKINLRAHRNYDSLRRVLTKMTHNFFCPADYSSTNKGEE--------DCAKSDEFIFLYEDFEGDRMLVGDVPWELFLASAKRLYIAKNP-----APRNKEHAEI 131 The following BLAST results are available for this feature:
BLAST of CF834966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834966 ID=CF834966; Name=CF834966; organism=Citrus sinensis; type=EST; length=768bpback to top |