CF834982

Overview
NameCF834982
Unique NameCF834982
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length471
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834982 vs. ExPASy Swiss-Prot
Match: SODC_NICPL (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2)

HSP 1 Score: 53.9138 bits (128), Expect = 6.588e-12
Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = 2 
Query:  119 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 262
            KA+AVL  SEG  GT+ F Q+    T +T N++ LK G HGFHVH  G
Sbjct:    3 KAVAVLSSSEGVSGTIFFTQDGDAPTTVTGNVSGLKPGLHGFHVHALG 50

HSP 2 Score: 37.3502 bits (85), Expect = 6.588e-12
Identity = 18/37 (48.65%), Postives = 21/37 (56.76%), Query Frame = 1 
Query:  265 HSCYYSGKHFNPFNKSHSDIHDHEEHRHYGDLGNINV 375
            + C  +G H+NP  K H    D  E RH GDLGNI V
Sbjct:   54 NGCMSTGPHYNPAGKEHGAPED--EVRHAGDLGNITV 88
[Close]
BLAST of CF834982 vs. ExPASy Swiss-Prot
Match: SODC2_SOLLC (Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopersicum GN=SODCC.5 PE=3 SV=3)

HSP 1 Score: 53.1434 bits (126), Expect = 1.111e-11
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 2 
Query:  119 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 262
            KA+AVL+ SEG  GT+ F Q+    T +  N++ LK G HGFHVH  G
Sbjct:    3 KAVAVLNSSEGVSGTILFTQDGAAPTTVNGNISGLKPGLHGFHVHALG 50

HSP 2 Score: 37.3502 bits (85), Expect = 1.111e-11
Identity = 18/37 (48.65%), Postives = 21/37 (56.76%), Query Frame = 1 
Query:  265 HSCYYSGKHFNPFNKSHSDIHDHEEHRHYGDLGNINV 375
            + C  +G H+NP  K H    D  E RH GDLGNI V
Sbjct:   54 NGCMSTGPHYNPAGKEHGAPED--EVRHAGDLGNITV 88
[Close]
BLAST of CF834982 vs. ExPASy Swiss-Prot
Match: SODC_CARPA (Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=SODCC PE=2 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 1.111e-11
Identity = 24/48 (50.00%), Postives = 29/48 (60.42%), Query Frame = 2 
Query:  119 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 262
            KA+AVL  SEG  GT+ F Q     T +T  ++ LK G HGFHVH  G
Sbjct:    3 KAVAVLSSSEGVSGTIFFTQAADGPTTVTGEISGLKPGHHGFHVHALG 50

HSP 2 Score: 39.6614 bits (91), Expect = 1.111e-11
Identity = 20/52 (38.46%), Postives = 24/52 (46.15%), Query Frame = 1 
Query:  265 HSCYYSGKHFNPFNKSHSDIHDHEEHRHYGDLGNINVDYGDLGNINVGPDGQ 420
            + C  +G HFNP  K H    D   H             GDLGN+NVG DG+
Sbjct:   54 NGCMSTGPHFNPAGKEHGAPEDDIRHA------------GDLGNVNVGDDGK 93
[Close]
BLAST of CF834982 vs. ExPASy Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 1.443e-11
Identity = 26/48 (54.17%), Postives = 30/48 (62.50%), Query Frame = 2 
Query:  119 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 262
            KA+ VL  SEG  GTV F QE    T +T N++ LK G HGFHVH  G
Sbjct:    3 KAVVVLSSSEGVSGTVYFAQEGDGPTTVTGNVSGLKPGLHGFHVHALG 50

HSP 2 Score: 36.1946 bits (82), Expect = 1.443e-11
Identity = 20/43 (46.51%), Postives = 24/43 (55.81%), Query Frame = 1 
Query:  265 HSCYYSGKHFNPFNKSHSDIHDHEEHRHYGDLGNINVDYGDLG 393
            + C  +G H+NP  K H    D  + RH GDLGNI V  GD G
Sbjct:   54 NGCMSTGPHYNPNGKEHGAPED--DVRHAGDLGNITV--GDDG 92
[Close]
BLAST of CF834982 vs. ExPASy Swiss-Prot
Match: SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 51.9878 bits (123), Expect = 1.443e-11
Identity = 24/48 (50.00%), Postives = 30/48 (62.50%), Query Frame = 2 
Query:  119 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 262
            K + VL+ SEG KGT+ F QE    T +T  ++ LK G HGFHVH  G
Sbjct:    3 KGVRVLNSSEGVKGTIFFTQEGNGTTTVTGTVSGLKPGLHGFHVHALG 50

HSP 2 Score: 38.1206 bits (87), Expect = 1.443e-11
Identity = 20/51 (39.22%), Postives = 23/51 (45.10%), Query Frame = 1 
Query:  265 HSCYYSGKHFNPFNKSHSDIHDHEEHRHYGDLGNINVDYGDLGNINVGPDG 417
            + C  +G HFNP  K+H    D   H             GDLGNI VG DG
Sbjct:   54 NGCMSTGPHFNPEGKTHGAPEDANRHA------------GDLGNITVGDDG 92
[Close]
BLAST of CF834982 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSJ (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. japonica GN=SODCC1 PE=1 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 1.874e-11
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 2 
Query:  119 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 262
            KA+ VL  SE  KGT+ F QE    T +T +++ LK G HGFH+H  G
Sbjct:    3 KAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALG 50

HSP 2 Score: 40.0466 bits (92), Expect = 1.874e-11
Identity = 19/47 (40.43%), Postives = 25/47 (53.19%), Query Frame = 1 
Query:  265 HSCYYSGKHFNPFNKSHSDIHDHEEHRHYGDLGNINVDYGDLGNINV 405
            + C  +G H+NP  K H    D  E RH GDLGN+      + NI+V
Sbjct:   54 NGCMSTGPHYNPAGKEHGAPED--ETRHAGDLGNVTAGEDGVANIHV 98
[Close]
BLAST of CF834982 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSI (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. indica GN=SODCC1 PE=2 SV=2)

HSP 1 Score: 49.6766 bits (117), Expect = 1.874e-11
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 2 
Query:  119 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 262
            KA+ VL  SE  KGT+ F QE    T +T +++ LK G HGFH+H  G
Sbjct:    3 KAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALG 50

HSP 2 Score: 40.0466 bits (92), Expect = 1.874e-11
Identity = 19/47 (40.43%), Postives = 25/47 (53.19%), Query Frame = 1 
Query:  265 HSCYYSGKHFNPFNKSHSDIHDHEEHRHYGDLGNINVDYGDLGNINV 405
            + C  +G H+NP  K H    D  E RH GDLGN+      + NI+V
Sbjct:   54 NGCMSTGPHYNPAGKEHGAPED--ETRHAGDLGNVTAGEDGVANIHV 98
[Close]
BLAST of CF834982 vs. ExPASy Swiss-Prot
Match: SODC2_MAIZE (Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 47.7506 bits (112), Expect = 1.877e-11
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 2 
Query:  119 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 262
            KA+AVL G++  KGT+ F QE    T +T +++ LK G HGFHVH  G
Sbjct:    3 KAVAVLAGTD-VKGTIFFSQEGDGPTTVTGSISGLKPGLHGFHVHALG 49

HSP 2 Score: 41.9726 bits (97), Expect = 1.877e-11
Identity = 19/47 (40.43%), Postives = 25/47 (53.19%), Query Frame = 1 
Query:  265 HSCYYSGKHFNPFNKSHSDIHDHEEHRHYGDLGNINVDYGDLGNINV 405
            + C  +G HFNP  K H    D  E RH GDLGN+      + N+N+
Sbjct:   53 NGCMSTGPHFNPVGKEHGAPED--EDRHAGDLGNVTAGEDGVVNVNI 97
[Close]
BLAST of CF834982 vs. ExPASy Swiss-Prot
Match: SODC_CAPAN (Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN=SODCC PE=2 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 2.433e-11
Identity = 24/48 (50.00%), Postives = 30/48 (62.50%), Query Frame = 2 
Query:  119 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 262
            KA+AVL  SE   GT+ F Q+    T +T N++ LK G HGFHVH  G
Sbjct:    3 KAVAVLSSSECVSGTILFSQDGDAPTTVTGNVSGLKPGLHGFHVHALG 50

HSP 2 Score: 38.891 bits (89), Expect = 2.433e-11
Identity = 18/37 (48.65%), Postives = 22/37 (59.46%), Query Frame = 1 
Query:  265 HSCYYSGKHFNPFNKSHSDIHDHEEHRHYGDLGNINV 375
            + C  +G H+NP  K H    D  E+RH GDLGNI V
Sbjct:   54 NGCMSTGPHYNPAGKEHGAPED--ENRHAGDLGNITV 88
[Close]
BLAST of CF834982 vs. ExPASy Swiss-Prot
Match: SODC_PANGI (Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=SODCC PE=2 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 3.159e-11
Identity = 23/48 (47.92%), Postives = 28/48 (58.33%), Query Frame = 2 
Query:  119 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 262
            KA+ VL GS G  G + F QE+   T +T  L+ L  G HGFHVH  G
Sbjct:    3 KAVTVLSGSGGVSGVIHFTQEEDGPTTVTGKLSGLAPGLHGFHVHALG 50

HSP 2 Score: 39.6614 bits (91), Expect = 3.159e-11
Identity = 18/37 (48.65%), Postives = 22/37 (59.46%), Query Frame = 1 
Query:  265 HSCYYSGKHFNPFNKSHSDIHDHEEHRHYGDLGNINV 375
            + C  +G H+NP NK H    D  E RH GDLGN+ V
Sbjct:   54 NGCLSTGPHYNPANKEHGAPED--ETRHAGDLGNVTV 88
The following BLAST results are available for this feature:
BLAST of CF834982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
SODC_NICPL6.588e-1252.08Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbagi... [more]
SODC2_SOLLC1.111e-1150.00Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopers... [more]
SODC_CARPA1.111e-1150.00Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=S... [more]
SODC_SPIOL1.443e-1154.17Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea ... [more]
SODC1_BRAJU1.443e-1150.00Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea ... [more]
SODC1_ORYSJ1.874e-1147.92Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC1_ORYSI1.874e-1147.92Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC2_MAIZE1.877e-1150.00Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODC... [more]
SODC_CAPAN2.433e-1150.00Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN... [more]
SODC_PANGI3.159e-1147.92Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H14_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834982 ID=CF834982; Name=CF834982; organism=Citrus sinensis; type=EST; length=471bp
TCGTTTCTCACCTTTATTTCATTTGATAATGGAGAAAGCAGCTTCACTAA
ACCTGGTAGCCCTTTTAGCTGTTTTATTTTGTTTTGTCAATATTGCAACC
AATTCAAGACCACATAGCAAAGCAATTGCTGTTCTTGACGGCAGTGAGGG
TTTCAAGGGAACTGTCTCCTTCTACCAGGAAGATGGCCATCATACAGTCA
TAACTGTAAACCTCGCTAATCTTAAGGCCGGTTCTCATGGATTCCATGTC
CACGAATCCGGATTCATTCGTGCTACTACAGTGGGAAACATTTTAACCCA
TTTAACAAATCTCATAGTGACATTCACGACCATGAGGAGCATCGTCATTA
TGGTGATTTAGGAAATATCAATGTTGATTATGGTGATTTAGGAAATATCA
ATGTTGGTCCTGATGGTCAGTATCTGCTGCACAAATTAAAGATCAATTTA
ATTATAAAAAAAAAAAAAAAA
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