CF834982

Overview
NameCF834982
Unique NameCF834982
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length471
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834982 vs. ExPASy Swiss-Prot
Match: SODC_CEREL (Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 45.8246 bits (107), Expect = 4.102e-11
Identity = 21/49 (42.86%), Postives = 30/49 (61.22%), Query Frame = 2
Query:  116 SKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 262
            +KA+ VL G    +GT+ F +  GH  V+T ++  L  G HGFHVH+ G
Sbjct:    3 TKAVCVLKGDGPVQGTIRF-EAKGHTVVVTGSITGLTEGDHGFHVHQFG 50          

HSP 2 Score: 42.743 bits (99), Expect = 4.102e-11
Identity = 18/45 (40.00%), Postives = 25/45 (55.56%), Query Frame = 1
Query:  271 CYYSGKHFNPFNKSHSDIHDHEEHRHYGDLGNINVDYGDLGNINV 405
            C  +G HFNP +K H    D  E RH GDLGN+  D   +  +++
Sbjct:   56 CTSAGPHFNPLSKKHGGPKD--EERHVGDLGNVTADKNGVAKVDI 98          
BLAST of CF834982 vs. ExPASy Swiss-Prot
Match: SODC2_BRAJU (Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea GN=SODCC2 PE=2 SV=3)

HSP 1 Score: 54.299 bits (129), Expect = 5.326e-11
Identity = 29/60 (48.33%), Postives = 37/60 (61.67%), Query Frame = 2
Query:  119 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILT 298
            K +AVL+ SEG KGT+ F QE    T +T  ++ LK G HGFHVH  G    TT G++ T
Sbjct:    3 KGVAVLNSSEGVKGTIFFAQEGEGKTTVTGTVSGLKPGLHGFHVHALG---DTTNGSMST 59          

HSP 2 Score: 33.8834 bits (76), Expect = 5.326e-11
Identity = 19/46 (41.30%), Postives = 20/46 (43.48%), Query Frame = 1
Query:  280 SGKHFNPFNKSHSDIHDHEEHRHYGDLGNINVDYGDLGNINVGPDG 417
            +G HFNP  K H    D   H             GDLGNI VG DG
Sbjct:   59 TGPHFNPDGKQHGAPEDANRHA------------GDLGNIIVGDDG 92          
BLAST of CF834982 vs. ExPASy Swiss-Prot
Match: SODC_BRAOC (Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata GN=SODCC PE=1 SV=2)

HSP 1 Score: 51.2174 bits (121), Expect = 5.326e-11
Identity = 23/49 (46.94%), Postives = 31/49 (63.27%), Query Frame = 2
Query:  116 SKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 262
            +K +AVL+ SEG KGT+ F  E    T +T  ++ L+ G HGFHVH  G
Sbjct:    2 AKGVAVLNSSEGVKGTIFFTHEGNGATTVTGTVSGLRPGLHGFHVHALG 50          

HSP 2 Score: 36.965 bits (84), Expect = 5.326e-11
Identity = 21/43 (48.84%), Postives = 25/43 (58.14%), Query Frame = 1
Query:  265 HSCYYSGKHFNPFNKSHSDIHDHEEHRHYGDLGNINVDYGDLG 393
            + C  +G HFNP  K+H    D   +RH GDLGNI V  GD G
Sbjct:   54 NGCMSTGPHFNPDGKTHGAPED--ANRHAGDLGNIIV--GDDG 92          
BLAST of CF834982 vs. ExPASy Swiss-Prot
Match: SODC_ARATH (Superoxide dismutase [Cu-Zn] OS=Arabidopsis thaliana GN=SODCC PE=1 SV=2)

HSP 1 Score: 49.6766 bits (117), Expect = 6.915e-11
Identity = 23/49 (46.94%), Postives = 31/49 (63.27%), Query Frame = 2
Query:  116 SKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 262
            +K +AVL+ SEG  GT+ F QE    T ++  ++ LK G HGFHVH  G
Sbjct:    2 AKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALG 50          

HSP 2 Score: 38.1206 bits (87), Expect = 6.915e-11
Identity = 20/51 (39.22%), Postives = 23/51 (45.10%), Query Frame = 1
Query:  265 HSCYYSGKHFNPFNKSHSDIHDHEEHRHYGDLGNINVDYGDLGNINVGPDG 417
            + C  +G HFNP  K+H    D   H             GDLGNI VG DG
Sbjct:   54 NGCMSTGPHFNPDGKTHGAPEDANRHA------------GDLGNITVGDDG 92          
BLAST of CF834982 vs. ExPASy Swiss-Prot
Match: SODCP_SPIOL (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea GN=SODCP PE=1 SV=2)

HSP 1 Score: 50.447 bits (119), Expect = 8.773e-11
Identity = 22/48 (45.83%), Postives = 30/48 (62.50%), Query Frame = 2
Query:  119 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 262
            KA+AVL G+   +G V+  QED   T + V ++ L  G HGFH+HE G
Sbjct:   72 KAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFG 119          

HSP 2 Score: 36.965 bits (84), Expect = 8.773e-11
Identity = 18/35 (51.43%), Postives = 21/35 (60.00%), Query Frame = 1
Query:  265 HSCYYSGKHFNPFNKSHSDIHDHEEHRHYGDLGNI 369
            + C  +G HFNP  K+H    D  E RH GDLGNI
Sbjct:  123 NGCMSTGPHFNPDKKTHGAPED--EVRHAGDLGNI 155          
The following BLAST results are available for this feature:
BLAST of CF834982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
SODC_CEREL4.102e-1142.86Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=... [more]
SODC2_BRAJU5.326e-1148.33Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea ... [more]
SODC_BRAOC5.326e-1146.94Superoxide dismutase [Cu-Zn] OS=Brassica oleracea ... [more]
SODC_ARATH6.915e-1146.94Superoxide dismutase [Cu-Zn] OS=Arabidopsis thalia... [more]
SODCP_SPIOL8.773e-1145.83Superoxide dismutase [Cu-Zn], chloroplastic OS=Spi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H14_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834982 ID=CF834982; Name=CF834982; organism=Citrus sinensis; type=EST; length=471bp
TCGTTTCTCACCTTTATTTCATTTGATAATGGAGAAAGCAGCTTCACTAA
ACCTGGTAGCCCTTTTAGCTGTTTTATTTTGTTTTGTCAATATTGCAACC
AATTCAAGACCACATAGCAAAGCAATTGCTGTTCTTGACGGCAGTGAGGG
TTTCAAGGGAACTGTCTCCTTCTACCAGGAAGATGGCCATCATACAGTCA
TAACTGTAAACCTCGCTAATCTTAAGGCCGGTTCTCATGGATTCCATGTC
CACGAATCCGGATTCATTCGTGCTACTACAGTGGGAAACATTTTAACCCA
TTTAACAAATCTCATAGTGACATTCACGACCATGAGGAGCATCGTCATTA
TGGTGATTTAGGAAATATCAATGTTGATTATGGTGATTTAGGAAATATCA
ATGTTGGTCCTGATGGTCAGTATCTGCTGCACAAATTAAAGATCAATTTA
ATTATAAAAAAAAAAAAAAAA
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