CF834984

Overview
NameCF834984
Unique NameCF834984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5829 contig Csv1_Contig5829:711..1384. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYC_NEUCR (Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa GN=for PE=3 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 6.169e-59
Identity = 117/202 (57.92%), Postives = 142/202 (70.30%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQ 661
            L+A++   +PF Y  +VTTTTHKSLRGPR  MIF+R           +  +YD EDKINF+VFP  QGGPHNH I ALAVALKQA++P FK Y ++V ANA AL   L   GY LV+ GT++H+VL DLRP+G+ G +VE L +  NIT NKNAV GD SAL PGG+RIGTPAMTSRG  E DFE++  F+  AV L  EIQ
Sbjct:  227 LIASEVIPSPFLYADVVTTTTHKSLRGPRGAMIFFRRGVRSVDAKTGKETLYDLEDKINFSVFPGHQGGPHNHTITALAVALKQAASPEFKEYQQKVVANAKALEKKLKELGYKLVSDGTDSHMVLVDLRPIGVDGARVEFLLEQINITCNKNAVPGDKSALTPGGLRIGTPAMTSRGFGEADFEKVAVFVDEAVKLCKEIQ 428          

HSP 2 Score: 23.483 bits (49), Expect = 6.169e-59
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A L+ DMAHIS
Sbjct:  209 IADSVGAYLVVDMAHIS 225          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.048e-58
Identity = 111/204 (54.41%), Postives = 146/204 (71.57%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE 667
            LVAA    +PF+Y  +VTTTTHKSLRGPR  MIF+R           E  +YDFEDKIN AVFP LQGGPHNH I  LAVALKQA+T  +KAY +QV +N+      L  +GY LV+GGT+NHLVL +L+P G+ G++VEK+ +  +I  NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++ E+  +AVT+ L+++ E
Sbjct:  264 LVAANVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKE-VLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTSEYKAYQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSE 466          

HSP 2 Score: 22.3274 bits (46), Expect = 1.048e-58
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            V +  +A++L DMAHIS
Sbjct:  246 VCNKQKAVMLADMAHIS 262          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 3.948e-58
Identity = 109/204 (53.43%), Postives = 145/204 (71.08%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE 667
            LVAA+   +PF++  +VTTTTHK+LRG R+G+IFYR           +   Y FED+INFAVFPSLQGGPHNH I A+AVALKQA TP F+ Y+ QV  NA A+ + L  +GYSLV+GGT+NHLVL DLRP GL G + E++ +L +IT NKN   GD SA+ PGG+R+G PA+TSR   E DF ++ +F+   V + LE++++
Sbjct:  258 LVAAKVIPSPFKHADVVTTTTHKTLRGARSGLIFYRKGVRTVDPKTGQEIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKRK 461          

HSP 2 Score: 24.6386 bits (52), Expect = 3.948e-58
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            V D ++A LL DMAHIS
Sbjct:  240 VCDEVKAHLLADMAHIS 256          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 220.705 bits (561), Expect = 8.750e-58
Identity = 110/204 (53.92%), Postives = 143/204 (70.10%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE 667
            LVAA+   +PF++  IVTTTTHK+LRG R+G+IFYR               Y FED+INFAVFPSLQGGPHNH I A+AVALKQA TP F+ Y+ QV  NA A+ + L  +GYSLV+GGT+NHLVL DLRP GL G + E++ +L +IT NKN   GD SA+ PGG+R+G PA+TSR   E DF ++ +F+   V + LE++ +
Sbjct:  258 LVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSK 461          

HSP 2 Score: 24.6386 bits (52), Expect = 8.750e-58
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            V D ++A LL DMAHIS
Sbjct:  240 VCDEVKAHLLADMAHIS 256          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 5.600e-57
Identity = 109/204 (53.43%), Postives = 143/204 (70.10%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE 667
            LVAA    +PF+Y  +VTTTTHKSLRGPR  MIFYR           E   YD+EDKIN AVFP LQGGPHNH I  LAVALKQA+TP ++AY +QV +N+      L  KGY LV+GGT+NHLVL +++  G+ G++VEK+ +  +I  NKN V GD SA+ PGG+R+GTPA+TSRG LE+DF ++ +F   AV + ++++ E
Sbjct:  265 LVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFYRKGVKEVNKQGKE-VFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNSSKFAQALGEKGYELVSGGTDNHLVLVNMKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAE 467          

HSP 2 Score: 23.483 bits (49), Expect = 5.600e-57
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            V +  +A+LL DMAHIS
Sbjct:  247 VCNKQKAILLADMAHIS 263          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.241e-56
Identity = 111/204 (54.41%), Postives = 140/204 (68.63%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE 667
            LVAA    +PF+Y  +VTTTTHKSLRGPR  MIF+R           E   YD+EDKIN AVFP LQGGPHNH I  LAVALKQA+T  +KAY +QV +N+      L   GY LV+GGTENHLVL +L+  G+ G+KVEK+ +  +I  NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++  F   AV L ++I+ E
Sbjct:  265 LVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGKE-VFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTAEYKAYQEQVMSNSAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSKVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDLAVKLAVKIKGE 467          

HSP 2 Score: 24.6386 bits (52), Expect = 1.241e-56
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            V D  +A++L DMAHIS
Sbjct:  247 VCDKQKAIMLADMAHIS 263          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 219.164 bits (557), Expect = 1.607e-56
Identity = 111/206 (53.88%), Postives = 136/206 (66.02%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG 673
            LVAA    +PFEY  +VTTTTHKSLRGPR  MIFYR           E  +YD E+KIN AVFP LQGGPHNH I  +AVALKQ  +  F  Y +Q+  NA  L   L   GYSL TGGT+NHL+L DLRP+G+ G + E + DL +I  NKN   GD SAL PGG+R+GTPA+TSRG  E+DFE++G+F+H  V +  +   E G
Sbjct:  265 LVAAGLIPSPFEYSDVVTTTTHKSLRGPRGAMIFYRKGVRSVNAKGVE-TLYDLEEKINSAVFPGLQGGPHNHTIAGIAVALKQCLSEDFVQYGEQILKNAKTLAERLKKHGYSLATGGTDNHLLLVDLRPIGVEGARAEHILDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFKEQDFEKVGDFIHEGVQIAKKYNAEAG 469          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.093e-56
Identity = 109/204 (53.43%), Postives = 139/204 (68.14%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE 667
            LVAA    +PF+Y  +VTTTTHKSLRGPR  MIF+R           E  +YD+EDKIN AVFP LQGGPHNH I  LAVALKQA+T  +KAY +QV +N       L   GY LV+GGTENHLVL +L+  G+ G++VEK+ +  +I  NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++      AV L ++I+ E
Sbjct:  265 LVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEVNKQGKE-VLYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTAEYKAYQEQVMSNCAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYLFDLAVKLAVKIKGE 467          

HSP 2 Score: 25.409 bits (54), Expect = 6.093e-56
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            V D  +A+LL DMAHIS
Sbjct:  247 VCDKQKAILLADMAHIS 263          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYM_NEUCR (Putative serine hydroxymethyltransferase, mitochondrial OS=Neurospora crassa GN=NCU05805 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 7.942e-56
Identity = 112/209 (53.59%), Postives = 141/209 (67.46%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYL------TGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQK 664
            LVAA+    PF +  IVTTT+HKSLRGPR  MIF+R           E  +Y+ E  IN +VFP  QGGPHNH I ALAVALKQA TP F+AY  QV ANA AL   L       G GY++V+GGT+NHLVL DL+P G+ G++VE++ +L  +  NKN V GD SAL PGG+RIGTPAMT+RG  E+DF ++ + + RAVT+ + I K
Sbjct:  264 LVAAKVMPGPFTHADIVTTTSHKSLRGPRGAMIFFRRGVRRTNKKGEE-ELYNLETPINASVFPGHQGGPHNHTIAALAVALKQAQTPEFRAYQSQVLANATALAARLGEPKDKNGLGYTIVSGGTDNHLVLIDLKPQGIDGSRVERVLELVGVAANKNTVPGDKSALTPGGLRIGTPAMTTRGFTEEDFARVADIIDRAVTIAVRINK 471          

HSP 2 Score: 23.483 bits (49), Expect = 7.942e-56
Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            + D + A L+ DMAHIS
Sbjct:  246 ICDKVNAYLMADMAHIS 262          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYC_CANAL (Serine hydroxymethyltransferase, cytosolic OS=Candida albicans GN=SHM2 PE=1 SV=3)

HSP 1 Score: 214.927 bits (546), Expect = 1.036e-55
Identity = 109/204 (53.43%), Postives = 139/204 (68.14%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE 667
            L+AA    +PFEY  IVTTTTHKSLRGPR  MIF+R           +  +YD E+ INF+VFP  QGGPHNH I ALA ALKQA+TP FK Y +QV  NA AL +  T KGY LV+ GT++H+VL  L+   + G +VE +C+  NI +NKN++ GD SAL PGGVRIG PAMT+RGL E+DF++I  ++  AV    E+Q +
Sbjct:  227 LIAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFFRRGVRSVNPKTGQEILYDLENPINFSVFPGHQGGPHNHTIAALATALKQANTPEFKEYQEQVLKNAKALESEFTKKGYKLVSDGTDSHMVLVSLKDKQIDGARVETVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGLGEEDFKKIVSYIDFAVNYAKEVQSQ 430          

HSP 2 Score: 23.483 bits (49), Expect = 1.036e-55
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A L+ DMAHIS
Sbjct:  209 IADKVGAYLVVDMAHIS 225          
The following BLAST results are available for this feature:
BLAST of CF834984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_NEUCR6.169e-5957.92Serine hydroxymethyltransferase, cytosolic OS=Neur... [more]
GLYM_ARATH1.048e-5854.41Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_RABIT3.948e-5853.43Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_HUMAN8.750e-5853.92Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_SOLTU5.600e-5753.43Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_FLAPR1.241e-5654.41Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYC_CAEBR1.607e-5653.88Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYN_FLAPR6.093e-5653.43Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYM_NEUCR7.942e-5653.59Putative serine hydroxymethyltransferase, mitochon... [more]
GLYC_CANAL1.036e-5553.43Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834984 ID=CF834984; Name=CF834984; organism=Citrus sinensis; type=EST; length=675bp
GTTGCTGATCCCTTAAGGGCCCTTTTGCTCTGTGATATGGCTCATATCAG
TCGCTCTTGTTGCTGCTCAGGAAGCTGCAAACCCCTTTGAGTACTGTCAC
ATAGTCACAACCACTACTCACAAGAGCTTGCGGGGTCCTAGGGCTGGTAT
GATCTTCTACCGGAAGGGTCCTAAACCACCCAAGAAGGGCCAACCAGAGG
GTGCGGTTTATGACTTTGAAGACAAGATCAACTTTGCTGTCTTCCCATCC
CTTCAAGGTGGTCCTCACAACCACCAGATTGGTGCTCTAGCTGTTGCCCT
GAAACAGGCCTCGACCCCTGCATTCAAGGCCTATGCGAAACAAGTCAAGG
CCAATGCAGTTGCACTTGGGAACTACCTGACGGGCAAGGGATACAGCCTT
GTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGGGATCTACGCCCTCT
TGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGACCTTTGCAACATTA
CTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTGCCTTGGCCCCTGGA
GGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGAGGTTTGTTGGAGAA
GGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGCTGTGACCCTCACGT
TGGAAATTCAAAAGGAGTATGGAAA
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