CF834984
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYC_NEUCR (Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa GN=for PE=3 SV=2) HSP 1 Score: 225.713 bits (574), Expect = 6.169e-59 Identity = 117/202 (57.92%), Postives = 142/202 (70.30%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQ 661 L+A++ +PF Y +VTTTTHKSLRGPR MIF+R + +YD EDKINF+VFP QGGPHNH I ALAVALKQA++P FK Y ++V ANA AL L GY LV+ GT++H+VL DLRP+G+ G +VE L + NIT NKNAV GD SAL PGG+RIGTPAMTSRG E DFE++ F+ AV L EIQ Sbjct: 227 LIASEVIPSPFLYADVVTTTTHKSLRGPRGAMIFFRRGVRSVDAKTGKETLYDLEDKINFSVFPGHQGGPHNHTITALAVALKQAASPEFKEYQQKVVANAKALEKKLKELGYKLVSDGTDSHMVLVDLRPIGVDGARVEFLLEQINITCNKNAVPGDKSALTPGGLRIGTPAMTSRGFGEADFEKVAVFVDEAVKLCKEIQ 428 HSP 2 Score: 23.483 bits (49), Expect = 6.169e-59 Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1 Query: 1 VADPLRALLLCDMAHIS 51 +AD + A L+ DMAHIS Sbjct: 209 IADSVGAYLVVDMAHIS 225
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 1.048e-58 Identity = 111/204 (54.41%), Postives = 146/204 (71.57%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE 667 LVAA +PF+Y +VTTTTHKSLRGPR MIF+R E +YDFEDKIN AVFP LQGGPHNH I LAVALKQA+T +KAY +QV +N+ L +GY LV+GGT+NHLVL +L+P G+ G++VEK+ + +I NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++ E+ +AVT+ L+++ E Sbjct: 264 LVAANVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKE-VLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTSEYKAYQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSE 466 HSP 2 Score: 22.3274 bits (46), Expect = 1.048e-58 Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 1 Query: 1 VADPLRALLLCDMAHIS 51 V + +A++L DMAHIS Sbjct: 246 VCNKQKAVMLADMAHIS 262
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2) HSP 1 Score: 221.861 bits (564), Expect = 3.948e-58 Identity = 109/204 (53.43%), Postives = 145/204 (71.08%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE 667 LVAA+ +PF++ +VTTTTHK+LRG R+G+IFYR + Y FED+INFAVFPSLQGGPHNH I A+AVALKQA TP F+ Y+ QV NA A+ + L +GYSLV+GGT+NHLVL DLRP GL G + E++ +L +IT NKN GD SA+ PGG+R+G PA+TSR E DF ++ +F+ V + LE++++ Sbjct: 258 LVAAKVIPSPFKHADVVTTTTHKTLRGARSGLIFYRKGVRTVDPKTGQEIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKRK 461 HSP 2 Score: 24.6386 bits (52), Expect = 3.948e-58 Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 1 Query: 1 VADPLRALLLCDMAHIS 51 V D ++A LL DMAHIS Sbjct: 240 VCDEVKAHLLADMAHIS 256
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3) HSP 1 Score: 220.705 bits (561), Expect = 8.750e-58 Identity = 110/204 (53.92%), Postives = 143/204 (70.10%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE 667 LVAA+ +PF++ IVTTTTHK+LRG R+G+IFYR Y FED+INFAVFPSLQGGPHNH I A+AVALKQA TP F+ Y+ QV NA A+ + L +GYSLV+GGT+NHLVL DLRP GL G + E++ +L +IT NKN GD SA+ PGG+R+G PA+TSR E DF ++ +F+ V + LE++ + Sbjct: 258 LVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSK 461 HSP 2 Score: 24.6386 bits (52), Expect = 8.750e-58 Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 1 Query: 1 VADPLRALLLCDMAHIS 51 V D ++A LL DMAHIS Sbjct: 240 VCDEVKAHLLADMAHIS 256
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 5.600e-57 Identity = 109/204 (53.43%), Postives = 143/204 (70.10%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE 667 LVAA +PF+Y +VTTTTHKSLRGPR MIFYR E YD+EDKIN AVFP LQGGPHNH I LAVALKQA+TP ++AY +QV +N+ L KGY LV+GGT+NHLVL +++ G+ G++VEK+ + +I NKN V GD SA+ PGG+R+GTPA+TSRG LE+DF ++ +F AV + ++++ E Sbjct: 265 LVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFYRKGVKEVNKQGKE-VFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNSSKFAQALGEKGYELVSGGTDNHLVLVNMKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAE 467 HSP 2 Score: 23.483 bits (49), Expect = 5.600e-57 Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1 Query: 1 VADPLRALLLCDMAHIS 51 V + +A+LL DMAHIS Sbjct: 247 VCNKQKAILLADMAHIS 263
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1) HSP 1 Score: 216.853 bits (551), Expect = 1.241e-56 Identity = 111/204 (54.41%), Postives = 140/204 (68.63%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE 667 LVAA +PF+Y +VTTTTHKSLRGPR MIF+R E YD+EDKIN AVFP LQGGPHNH I LAVALKQA+T +KAY +QV +N+ L GY LV+GGTENHLVL +L+ G+ G+KVEK+ + +I NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++ F AV L ++I+ E Sbjct: 265 LVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGKE-VFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTAEYKAYQEQVMSNSAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSKVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDLAVKLAVKIKGE 467 HSP 2 Score: 24.6386 bits (52), Expect = 1.241e-56 Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1 Query: 1 VADPLRALLLCDMAHIS 51 V D +A++L DMAHIS Sbjct: 247 VCDKQKAIMLADMAHIS 263
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3) HSP 1 Score: 219.164 bits (557), Expect = 1.607e-56 Identity = 111/206 (53.88%), Postives = 136/206 (66.02%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG 673 LVAA +PFEY +VTTTTHKSLRGPR MIFYR E +YD E+KIN AVFP LQGGPHNH I +AVALKQ + F Y +Q+ NA L L GYSL TGGT+NHL+L DLRP+G+ G + E + DL +I NKN GD SAL PGG+R+GTPA+TSRG E+DFE++G+F+H V + + E G Sbjct: 265 LVAAGLIPSPFEYSDVVTTTTHKSLRGPRGAMIFYRKGVRSVNAKGVE-TLYDLEEKINSAVFPGLQGGPHNHTIAGIAVALKQCLSEDFVQYGEQILKNAKTLAERLKKHGYSLATGGTDNHLLLVDLRPIGVEGARAEHILDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFKEQDFEKVGDFIHEGVQIAKKYNAEAG 469
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1) HSP 1 Score: 213.772 bits (543), Expect = 6.093e-56 Identity = 109/204 (53.43%), Postives = 139/204 (68.14%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE 667 LVAA +PF+Y +VTTTTHKSLRGPR MIF+R E +YD+EDKIN AVFP LQGGPHNH I LAVALKQA+T +KAY +QV +N L GY LV+GGTENHLVL +L+ G+ G++VEK+ + +I NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++ AV L ++I+ E Sbjct: 265 LVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEVNKQGKE-VLYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTAEYKAYQEQVMSNCAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYLFDLAVKLAVKIKGE 467 HSP 2 Score: 25.409 bits (54), Expect = 6.093e-56 Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 1 Query: 1 VADPLRALLLCDMAHIS 51 V D +A+LL DMAHIS Sbjct: 247 VCDKQKAILLADMAHIS 263
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYM_NEUCR (Putative serine hydroxymethyltransferase, mitochondrial OS=Neurospora crassa GN=NCU05805 PE=3 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 7.942e-56 Identity = 112/209 (53.59%), Postives = 141/209 (67.46%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYL------TGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQK 664 LVAA+ PF + IVTTT+HKSLRGPR MIF+R E +Y+ E IN +VFP QGGPHNH I ALAVALKQA TP F+AY QV ANA AL L G GY++V+GGT+NHLVL DL+P G+ G++VE++ +L + NKN V GD SAL PGG+RIGTPAMT+RG E+DF ++ + + RAVT+ + I K Sbjct: 264 LVAAKVMPGPFTHADIVTTTSHKSLRGPRGAMIFFRRGVRRTNKKGEE-ELYNLETPINASVFPGHQGGPHNHTIAALAVALKQAQTPEFRAYQSQVLANATALAARLGEPKDKNGLGYTIVSGGTDNHLVLIDLKPQGIDGSRVERVLELVGVAANKNTVPGDKSALTPGGLRIGTPAMTTRGFTEEDFARVADIIDRAVTIAVRINK 471 HSP 2 Score: 23.483 bits (49), Expect = 7.942e-56 Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 1 Query: 1 VADPLRALLLCDMAHIS 51 + D + A L+ DMAHIS Sbjct: 246 ICDKVNAYLMADMAHIS 262
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYC_CANAL (Serine hydroxymethyltransferase, cytosolic OS=Candida albicans GN=SHM2 PE=1 SV=3) HSP 1 Score: 214.927 bits (546), Expect = 1.036e-55 Identity = 109/204 (53.43%), Postives = 139/204 (68.14%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE 667 L+AA +PFEY IVTTTTHKSLRGPR MIF+R + +YD E+ INF+VFP QGGPHNH I ALA ALKQA+TP FK Y +QV NA AL + T KGY LV+ GT++H+VL L+ + G +VE +C+ NI +NKN++ GD SAL PGGVRIG PAMT+RGL E+DF++I ++ AV E+Q + Sbjct: 227 LIAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFFRRGVRSVNPKTGQEILYDLENPINFSVFPGHQGGPHNHTIAALATALKQANTPEFKEYQEQVLKNAKALESEFTKKGYKLVSDGTDSHMVLVSLKDKQIDGARVETVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGLGEEDFKKIVSYIDFAVNYAKEVQSQ 430 HSP 2 Score: 23.483 bits (49), Expect = 1.036e-55 Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1 Query: 1 VADPLRALLLCDMAHIS 51 +AD + A L+ DMAHIS Sbjct: 209 IADKVGAYLVVDMAHIS 225 The following BLAST results are available for this feature:
BLAST of CF834984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834984 ID=CF834984; Name=CF834984; organism=Citrus sinensis; type=EST; length=675bpback to top |