CF834984

Overview
NameCF834984
Unique NameCF834984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5829 contig Csv1_Contig5829:711..1384. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYC_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=shm2 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.994e-55
Identity = 112/203 (55.17%), Postives = 136/203 (67.00%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQK 664
            LVAA    +PFEY  IVTTTTHKSLRGPR  MIFYR              +Y+ EDKINF+VFP  QGGPHNH I ALAVAL QA TP F  Y K V +NA A+ N    +GY LV+GGT+ HLVL DL   G+ G +VE++ +L NI+ NKN V GD SAL P G+R+GTPA T+RG  EKDFE++ E +   V+LT +I +
Sbjct:  227 LVAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFYRKGTRSHDKRGNP-ILYELEDKINFSVFPGHQGGPHNHTITALAVALGQAKTPEFYQYQKDVLSNAKAMANAFITRGYKLVSGGTDTHLVLVDLTDKGVDGARVERILELVNISANKNTVPGDKSALIPRGLRLGTPACTTRGFDEKDFERVVELIDEVVSLTKKINE 428          

HSP 2 Score: 25.0238 bits (53), Expect = 2.994e-55
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            + +   A LLCDMAHIS
Sbjct:  209 ITEMCNAYLLCDMAHIS 225          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYC_YEAST (Serine hydroxymethyltransferase, cytosolic OS=Saccharomyces cerevisiae GN=SHM2 PE=1 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 3.030e-55
Identity = 109/217 (50.23%), Postives = 144/217 (66.36%), Query Frame = 2
Query:   26 CSVIWLISVA----LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQK 664
            C    ++ +A    L+AA    +PFEY  IVTTTTHKSLRGPR  MIF+R           +  +YD E+ INF+VFP  QGGPHNH I ALA ALKQA+TP FK Y  QV  NA AL +     GY LV+ GT++H+VL  LR  G+ G +VE +C+  NI +NKN++ GD SAL PGGVRIG PAMT+RG+ E+DF +I +++++AV    ++Q+
Sbjct:  212 CGAYLMVDMAHISGLIAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFFRRGVRSINPKTGKEVLYDLENPINFSVFPGHQGGPHNHTIAALATALKQAATPEFKEYQTQVLKNAKALESEFKNLGYRLVSNGTDSHMVLVSLREKGVDGARVEYICEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFHRIVQYINKAVEFAQQVQQ 428          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 6.750e-55
Identity = 107/206 (51.94%), Postives = 136/206 (66.02%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG 673
            LVAA    +PFEY  +VTTTTHKSLRGPR  +IFYR           +  +YD E+KIN AVFP LQGGPHNH I  +AVAL+Q  +  F  Y +QV  NA  L   +   GY+L TGGT+NHL+L DLRP+G+ G + E + DL +I  NKN   GD SAL PGG+R+GTPA+TSRG  E+DFE++G+F+H  V +  +   E G
Sbjct:  261 LVAAGLIPSPFEYSDVVTTTTHKSLRGPRGALIFYRKGVRSTNAKGVD-TLYDLEEKINSAVFPGLQGGPHNHTIAGIAVALRQCLSEDFVQYGEQVLKNAKTLAERMKKHGYALATGGTDNHLLLVDLRPIGVEGARAEHVLDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFQEQDFEKVGDFIHEGVQIAKKYNAEAG 465          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYM_CANGA (Serine hydroxymethyltransferase, mitochondrial OS=Candida glabrata GN=SHM1 PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 1.469e-54
Identity = 104/204 (50.98%), Postives = 139/204 (68.14%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE 667
            LVAA    +PFE+  IVTTTTHKSLRGPR  MIFYR           +   + F+  INF+VFP  QGGPHNH I ALAVALKQA TP F  Y KQV +NA A G+ L  +G+ LV+GGT+NHL+L +L  +G+ G ++E + +  NI  NKN + GD SAL P G+R+GTPAMT+RG  E+DF+++ E++  AV L++ ++ +
Sbjct:  237 LVAANVIDSPFEHSDIVTTTTHKSLRGPRGAMIFYRKGIKKVNKKTGKETPFTFDKTINFSVFPGHQGGPHNHTISALAVALKQAKTPEFVEYQKQVVSNAKAFGDELLKRGFELVSGGTDNHLLLLNLSNMGIDGARLEAILEKINIAANKNTIPGDKSALFPSGLRVGTPAMTTRGFQEQDFKKVAEYIDNAVKLSIALKSQ 440          

HSP 2 Score: 23.483 bits (49), Expect = 1.469e-54
Identity = 11/17 (64.71%), Postives = 12/17 (70.59%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD   A LL DMAHIS
Sbjct:  219 IADGCGAYLLSDMAHIS 235          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYC_CANGA (Serine hydroxymethyltransferase, cytosolic OS=Candida glabrata GN=SHM2 PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 7.463e-54
Identity = 111/216 (51.39%), Postives = 139/216 (64.35%), Query Frame = 2
Query:   26 CSVIWLISVA----LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQ 661
            C    ++ +A    LVAA    +PFEY  IVTTTTHKSLRGPR  MIF+R           +   YD E+ INF+VFP  QGGPHNH I ALA ALKQA+TP FK Y  QV  NA AL N     GY LV+ GT++H+VL  LR  G+ G +VE +C+  NI +NKN++ GD SAL PGGVRIG PAMT+RG+ E+DF +I  ++ +AV    + Q
Sbjct:  212 CGAYLMVDMAHISGLVAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFFRRGIRSVNQKTGKEIPYDLENPINFSVFPGHQGGPHNHTIAALATALKQAATPEFKEYQTQVLKNAKALENEFQTLGYRLVSNGTDSHMVLVSLREKGVDGARVEYVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFHRIVRYIDQAVKFAEQTQ 427          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYC_ASHGO (Serine hydroxymethyltransferase, cytosolic OS=Ashbya gossypii GN=SHM2 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.083e-53
Identity = 107/203 (52.71%), Postives = 134/203 (66.01%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQK 664
            LVAA    +PFEY  IVTTTTHKSLRGPR  MIF+R           E  +YD E  INF+VFP  QGGPHNH I ALA ALKQA+TP F+ Y + V  NA  L        Y LV+ GT++H+VL  LR  G+ G +VE +C+  NI +NKN++ GD SAL PGGVRIG PAMT+RG+ E+DF +I  +++RAV +   IQ+
Sbjct:  226 LVAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFFRRGVRSVHPKTGEEVMYDLEGPINFSVFPGHQGGPHNHTISALATALKQATTPEFREYQELVLKNAKVLETEFKKLNYRLVSDGTDSHMVLVSLREKGVDGARVEHVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFARIVGYINRAVEIARSIQQ 428          

HSP 2 Score: 23.8682 bits (50), Expect = 2.083e-53
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A L+ DMAHIS
Sbjct:  208 IADKVGAYLMVDMAHIS 224          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYM_ASHGO (Serine hydroxymethyltransferase, mitochondrial OS=Ashbya gossypii GN=SHM1 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.713e-53
Identity = 104/204 (50.98%), Postives = 138/204 (67.65%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE 667
            LVAA    +PFEY  IVTTTTHKSLRGPR  MIFYR           E  +YD + +INF+VFP+ QGGPHNH I ALAVALKQA+TP FK Y   V  NA   G  L+ +G+SLV+GGT+ HL+L DL P+G+ G+++E + +  NI  NKN + GD SAL P G+R+GTPAMT+RG    +F ++  +++ AV L + ++ +
Sbjct:  250 LVAAGVHPSPFEYSDIVTTTTHKSLRGPRGAMIFYRKGIRKVTKKGTE-IMYDLDKRINFSVFPAHQGGPHNHTISALAVALKQAATPEFKNYQTAVVENAKVFGEELSKRGFSLVSGGTDTHLLLIDLSPMGIDGSRLETILERLNIAANKNTIPGDKSALYPSGLRVGTPAMTTRGFGPAEFGRVAAYINEAVKLAIGLKSQ 452          

HSP 2 Score: 23.483 bits (49), Expect = 2.713e-53
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD   A LL DMAH+S
Sbjct:  232 IADACGAYLLSDMAHVS 248          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYM_KLULA (Serine hydroxymethyltransferase, mitochondrial OS=Kluyveromyces lactis GN=SHM1 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 4.611e-53
Identity = 107/204 (52.45%), Postives = 134/204 (65.69%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE 667
            LVAA    +PFEY  IVTTTTHKSLRGPR  MIFYR           E  +YD + +INF+VFP  QGGPHNH I ALAVALKQA+TP FK Y   V  NA   G  L  KG+ LV+GGT+ HL+L +L  LG+ G ++E L +  NI  NKN + GD SAL P G+R+GTPAMT+RG   ++F Q+  ++ RAV L + I+ +
Sbjct:  251 LVAAGVTRSPFEYSDIVTTTTHKSLRGPRGAMIFYRKGVRKVTKKGKE-VLYDLDKRINFSVFPGHQGGPHNHTISALAVALKQAATPEFKEYQAAVVENARIFGEELVKKGFELVSGGTDTHLILINLSNLGIDGARLETLLENINIAANKNTIPGDKSALFPSGLRVGTPAMTTRGFGPQEFAQVAAYIDRAVKLAIGIKSQ 453          

HSP 2 Score: 23.0978 bits (48), Expect = 4.611e-53
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD   A L+ DMAHIS
Sbjct:  233 IADACGAYLMSDMAHIS 249          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYD_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=SPAC24C9.12c PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.448e-51
Identity = 101/204 (49.51%), Postives = 130/204 (63.73%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE 667
            LV+A    +PFEY  +VTTTTHKSLRGPR  MIF+R               YD EDKINF+VFP  QGGPHNH I ALAVALKQ   PA+K Y  QV  NA         +GY L   GT++H+VL D++  G+ G + E++ +L NI  NKN V  D SA +P G+R+GTPAMT+RG  E+DF ++ +++ RA+T    +QKE
Sbjct:  221 LVSAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRRGLRKHDKKGNP-IYYDLEDKINFSVFPGHQGGPHNHTITALAVALKQCQEPAYKEYQAQVVKNAKVCEEEFKKRGYKLAADGTDSHMVLVDVKSKGVDGARAERVLELINIVTNKNTVPSDKSAFSPSGIRVGTPAMTTRGFKEQDFVRVVDYIDRALTFAANLQKE 423          

HSP 2 Score: 24.2534 bits (51), Expect = 1.448e-51
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A L+ DMAHIS
Sbjct:  203 IADSVNAYLVVDMAHIS 219          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYM_YEAST (Serine hydroxymethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=SHM1 PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 2.484e-49
Identity = 101/197 (51.27%), Postives = 128/197 (64.97%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 646
            LVAA    +PFE+  IVTTTTHKSLRGPR  MIF+R           E   Y+ E KINF+VFP  QGGPHNH IGA+AVALKQA +P FK Y +++  N+      LT  GY LV+GGT+NHL++ DL    + G +VE +    NI  NKN + GD SAL P G+RIGTPAMT+RG   ++F Q+ +++  AV L
Sbjct:  243 LVAANVVPSPFEHSDIVTTTTHKSLRGPRGAMIFFRKGIKSVTKKGKE-IPYELEKKINFSVFPGHQGGPHNHTIGAMAVALKQAMSPEFKEYQQKIVDNSKWFAQELTKMGYKLVSGGTDNHLIVIDLSGTQVDGARVETILSALNIAANKNTIPGDKSALFPSGLRIGTPAMTTRGFGREEFSQVAKYIDSAVKL 438          
The following BLAST results are available for this feature:
BLAST of CF834984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_SCHPO2.994e-5555.17Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYC_YEAST3.030e-5550.23Serine hydroxymethyltransferase, cytosolic OS=Sacc... [more]
GLYC_CAEEL6.750e-5551.94Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYM_CANGA1.469e-5450.98Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_CANGA7.463e-5451.39Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYC_ASHGO2.083e-5352.71Serine hydroxymethyltransferase, cytosolic OS=Ashb... [more]
GLYM_ASHGO2.713e-5350.98Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_KLULA4.611e-5352.45Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYD_SCHPO1.448e-5149.51Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYM_YEAST2.484e-4951.27Serine hydroxymethyltransferase, mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834984 ID=CF834984; Name=CF834984; organism=Citrus sinensis; type=EST; length=675bp
GTTGCTGATCCCTTAAGGGCCCTTTTGCTCTGTGATATGGCTCATATCAG
TCGCTCTTGTTGCTGCTCAGGAAGCTGCAAACCCCTTTGAGTACTGTCAC
ATAGTCACAACCACTACTCACAAGAGCTTGCGGGGTCCTAGGGCTGGTAT
GATCTTCTACCGGAAGGGTCCTAAACCACCCAAGAAGGGCCAACCAGAGG
GTGCGGTTTATGACTTTGAAGACAAGATCAACTTTGCTGTCTTCCCATCC
CTTCAAGGTGGTCCTCACAACCACCAGATTGGTGCTCTAGCTGTTGCCCT
GAAACAGGCCTCGACCCCTGCATTCAAGGCCTATGCGAAACAAGTCAAGG
CCAATGCAGTTGCACTTGGGAACTACCTGACGGGCAAGGGATACAGCCTT
GTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGGGATCTACGCCCTCT
TGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGACCTTTGCAACATTA
CTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTGCCTTGGCCCCTGGA
GGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGAGGTTTGTTGGAGAA
GGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGCTGTGACCCTCACGT
TGGAAATTCAAAAGGAGTATGGAAA
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