CF834984

Overview
NameCF834984
Unique NameCF834984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5829 contig Csv1_Contig5829:711..1384. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYM_CANAL (Serine hydroxymethyltransferase, mitochondrial OS=Candida albicans GN=SHM1 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.441e-49
Identity = 99/204 (48.53%), Postives = 132/204 (64.71%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE 667
            LV+A    +PF Y  IVTTTTHKSLRGPR  MIF+R           E   Y+ E KINF VFP  QGGPHNH I ALAVALKQ + P +  Y ++V +NA    + L  KG+ LV+ GT+ HL+L DLR   + G +VE + +  NI  NKN V GD SAL P G+R+GTPAMT+RG   ++F+++ EF+ +AV + +E++ +
Sbjct:  248 LVSAVVTDSPFPYSDIVTTTTHKSLRGPRGAMIFFRKGIRKVTTKGKE-IPYELERKINFLVFPGHQGGPHNHTISALAVALKQCTEPEYVKYQQEVVSNAKHFADALVSKGFKLVSDGTDTHLILVDLRSRNIDGARVEAVLERANIAANKNTVPGDVSALFPSGLRVGTPAMTTRGFGPEEFDKVAEFIDQAVNIAIELKAQ 450          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYC_ENCCU (Serine hydroxymethyltransferase, cytosolic OS=Encephalitozoon cuniculi GN=SHMT-1 PE=3 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 7.001e-44
Identity = 90/201 (44.78%), Postives = 125/201 (62.19%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEI 658
            LVA+    +PFE+C IV TTT K LRGPR  +IFYR            G   D + +INFAVFP LQGGPHNH I  +A AL  A TP F  Y ++V  N+  L + L   G  ++TGGT+NH++L DLR  G+ G  VE +CD   I++N+NA+ G+SS L+P G+R+GT A+T+RG   ++  ++G+ +   V L  E+
Sbjct:  222 LVASGLMNSPFEHCDIVMTTTQKGLRGPRGALIFYRRAVTK------NGETVDLDARINFAVFPMLQGGPHNHTIAGIASALLHAGTPEFAEYTRRVVENSRELCSRLQSLGLDILTGGTDNHMLLVDLRSTGVDGAAVEHMCDALGISLNRNAIVGNSSPLSPSGIRVGTYAVTARGFGPEEMREVGDIIGGVVKLCREM 416          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_SYMTH (Serine hydroxymethyltransferase OS=Symbiobacterium thermophilum GN=glyA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.538e-43
Identity = 96/197 (48.73%), Postives = 120/197 (60.91%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 643
            L A     NP E+ H+VTTTTHK+LRGPR G I  +                +F  +I+ AVFP +QGGP  H I A AVA KQ S P ++AY  QV  NA AL   L  +GY LVTGGT+NHL+L DLRP G+TG   E L D  +ITVNKNA+  D    +   G+RIGTPAMT+RG+ E +  QI + + RA+T
Sbjct:  204 LAATGYYPNPVEHAHVVTTTTHKTLRGPRGGAILCKK---------------EFAKEIDKAVFPGMQGGPLMHIIAAKAVAFKQLSDPDYRAYCGQVVKNAKALAQALLERGYRLVTGGTDNHLMLVDLRPKGITGRDAEHLLDRVSITVNKNAIPNDPEKPMVTSGIRIGTPAMTTRGMKEAEMVQIADLIDRAIT 385          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_HELMI (Serine hydroxymethyltransferase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=glyA PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 8.029e-43
Identity = 95/193 (49.22%), Postives = 118/193 (61.14%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLH 631
            LVAA    +P  Y   VTTTTHK+LRGPR GMI  +                ++  K++ A+FP LQGGP  H I A AVA ++A  PAF AY KQ+ ANA AL   LT +G+ LV+GGT+NHL+L DLR   LTG + EK  D C ITVNKNA+ F   S     G+RIGTPA TSRG+ E   +Q+ E +H
Sbjct:  207 LVAAGLHPSPVPYAEFVTTTTHKTLRGPRGGMILCKQ---------------EWAAKVDKAIFPGLQGGPLMHIIAAKAVAFQEAMAPAFTAYQKQIAANAAALAKGLTDRGFQLVSGGTDNHLMLVDLRNKQLTGKEAEKRLDECRITVNKNAIPFDPQSPFVTSGIRIGTPAATSRGMDEAAMDQVAEAIH 384          

HSP 2 Score: 23.8682 bits (50), Expect = 8.029e-43
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A+L+ DMAHI+
Sbjct:  189 IADEVGAMLMVDMAHIA 205          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_EUBR3 (Serine hydroxymethyltransferase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=glyA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.226e-40
Identity = 90/192 (46.88%), Postives = 112/192 (58.33%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINF--AVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGE 622
            LVAA    +P  Y H+ TTTTHK+LRGPR GMI                   + +DK NF  A+FP +QGGP  H I A AV  K+A  P FK Y KQ+  NA AL   L  +G  +V+ GT+NHL+L DL P GLTG  +EKL D  +IT NKN +  D        G+R+GTPA TSRGL E DF+++ E
Sbjct:  206 LVAAGLHPSPIPYAHVTTTTTHKTLRGPRGGMIL---------------CSQEMQDKYNFNKAIFPGIQGGPLMHVIAAKAVCFKEALQPEFKEYQKQIVKNAQALCKGLQSRGIKIVSDGTDNHLMLVDLTPFGLTGKSIEKLLDAAHITANKNTIPNDPQKPFVTSGIRLGTPAATSRGLKEDDFDKVAE 382          

HSP 2 Score: 23.483 bits (49), Expect = 1.226e-40
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A+L+ DMAHI+
Sbjct:  188 IADKVDAVLMVDMAHIA 204          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_EXIS2 (Serine hydroxymethyltransferase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=glyA PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 3.534e-40
Identity = 91/192 (47.40%), Postives = 114/192 (59.38%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            LVAA    NP E+ H VTTTTHK+LRGPR GMI  +                +    I+ ++FP +QGGP  H I A AVA  +A  P FK Y +QV ANA  LG  LT +G  +V+GGT+NHL+L DL+PLG+TG   E   D   ITVNKN + F  +S     G+RIGT AMTSRG  E + +QI E +
Sbjct:  209 LVAAGLHPNPVEHAHFVTTTTHKTLRGPRGGMILCKE---------------EHAKAIDKSIFPGIQGGPLMHVIAAKAVAFAEALAPEFKDYIEQVVANAKVLGEELTARGLRIVSGGTDNHLLLVDLQPLGITGKLAEHALDEAGITVNKNTIPFDPASPFVTSGIRIGTAAMTSRGFKEAEMKQIAELI 385          

HSP 2 Score: 22.7126 bits (47), Expect = 3.534e-40
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A L+ DMAHI+
Sbjct:  191 IADSVGAYLMVDMAHIA 207          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_BACSK (Serine hydroxymethyltransferase OS=Bacillus clausii (strain KSM-K16) GN=glyA PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 3.534e-40
Identity = 94/198 (47.47%), Postives = 117/198 (59.09%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 646
            LVAA    NP  Y H VTTTTHK+LRGPR GMI              E    +F  K++ ++FP +QGGP  H I A AVA  +A +  FK YAKQ+ ANA  LG  L  +G  +V+GGT+NHL+L DLR L LTG   EK  D   IT NKNA+ F         G+RIGT A+TSRG  E + ++IGE +  A+TL
Sbjct:  204 LVAAGLHQNPVPYAHFVTTTTHKTLRGPRGGMILCN-----------EETAEEFGKKLDKSIFPGIQGGPLMHVIAAKAVAFGEALSDEFKTYAKQIIANAKRLGEKLQAEGVDIVSGGTDNHLLLLDLRSLQLTGKVAEKALDAVGITTNKNAIPFDPEKPFVTSGIRIGTAAVTSRGFGENEMDEIGELI--ALTL 388          

HSP 2 Score: 22.7126 bits (47), Expect = 3.534e-40
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A L+ DMAHI+
Sbjct:  186 IADEVGAYLMVDMAHIA 202          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_HYPME (Serine hydroxymethyltransferase OS=Hyphomicrobium methylovorum GN=glyA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.366e-39
Identity = 93/203 (45.81%), Postives = 117/203 (57.64%), Query Frame = 2
Query:   35 IWLISVA----LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            I+L+ +A    LVAA    +PF + H+VTTTTHK+LRGPR GMI                   D   KIN A+FP +QGGP  H I   AVA  +A  P FK Y KQV  NA ALG  L   G++LV+GGT+ HLVL DLRP  LTG K EK     NIT NKN + F     +   G+R+G+PA T+RG    +F++IG  +
Sbjct:  209 IFLVDMAHFAGLVAAGLIPSPFPHAHVVTTTTHKTLRGPRGGMILTNDA--------------DIAKKINSAIFPGIQGGPLMHVIAGKAVAFGEALRPDFKVYIKQVMDNARALGEVLVQNGFALVSGGTDTHLVLVDLRPKKLTGTKAEKALGRANITCNKNGIPFDPEKPMVTSGIRLGSPAGTTRGFGVAEFQEIGRLI 397          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_ANATD (Serine hydroxymethyltransferase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=glyA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.729e-39
Identity = 90/197 (45.69%), Postives = 118/197 (59.90%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 643
            LVAA    +P EY   VTTTTHK+LRGPR G+I  +                 +   I+ ++FP +QGGP  H I A AVALK+A T  FK Y  Q+  NA AL   L  +G+ LV+GGT+NHL+L DLR  G+TG   EK+ D  NIT NKNAV F   S +   G+R+GTPA+T+RG  E D  ++ + +H A+T
Sbjct:  207 LVAAGLHPSPVEYADFVTTTTHKTLRGPRGGLILCKEK---------------YAKLIDKSIFPGIQGGPLEHVIAAKAVALKEAMTEEFKNYQVQILKNAKALSTRLIERGFRLVSGGTDNHLMLVDLRNKGITGKDAEKILDEHNITCNKNAVPFDTQSPMITSGIRLGTPAVTTRGFKEGDMLEVADIIHDALT 388          

HSP 2 Score: 22.7126 bits (47), Expect = 1.729e-39
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A L+ DMAHI+
Sbjct:  189 IADEVGAYLMVDMAHIA 205          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_CALS8 (Serine hydroxymethyltransferase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=glyA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.935e-39
Identity = 88/197 (44.67%), Postives = 118/197 (59.90%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 643
            LVAA    +P EY   VTTTTHK+LRGPR G+I  +                 +   I+ ++FP +QGGP  H I A AVALK+A T  F+ Y  Q+  NA AL   L  +G+ LV+GGT+NHL+L DLR  G+TG   EK  D  NIT NKNA+ F   S +   G+R+GTPA+T+RG  E+D  ++ + +H A+T
Sbjct:  209 LVAAGLHPSPVEYADFVTTTTHKTLRGPRGGLILCKEK---------------YAKLIDKSIFPGIQGGPLEHVIAAKAVALKEAMTEEFRNYQIQILKNAKALSERLIERGFRLVSGGTDNHLMLVDLRNKGITGKDAEKRLDSLNITCNKNAIPFDTQSPMVTSGIRLGTPAVTTRGFKEEDMIEVADIIHDALT 390          

HSP 2 Score: 22.7126 bits (47), Expect = 2.935e-39
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A L+ DMAHI+
Sbjct:  191 IADEVGAYLMVDMAHIA 207          
The following BLAST results are available for this feature:
BLAST of CF834984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_CANAL9.441e-4948.53Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_ENCCU7.001e-4444.78Serine hydroxymethyltransferase, cytosolic OS=Ence... [more]
GLYA_SYMTH4.538e-4348.73Serine hydroxymethyltransferase OS=Symbiobacterium... [more]
GLYA_HELMI8.029e-4349.22Serine hydroxymethyltransferase OS=Heliobacterium ... [more]
GLYA_EUBR31.226e-4046.88Serine hydroxymethyltransferase OS=Eubacterium rec... [more]
GLYA_EXIS23.534e-4047.40Serine hydroxymethyltransferase OS=Exiguobacterium... [more]
GLYA_BACSK3.534e-4047.47Serine hydroxymethyltransferase OS=Bacillus clausi... [more]
GLYA_HYPME1.366e-3945.81Serine hydroxymethyltransferase OS=Hyphomicrobium ... [more]
GLYA_ANATD1.729e-3945.69Serine hydroxymethyltransferase OS=Anaerocellum th... [more]
GLYA_CALS82.935e-3944.67Serine hydroxymethyltransferase OS=Caldicellulosir... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834984 ID=CF834984; Name=CF834984; organism=Citrus sinensis; type=EST; length=675bp
GTTGCTGATCCCTTAAGGGCCCTTTTGCTCTGTGATATGGCTCATATCAG
TCGCTCTTGTTGCTGCTCAGGAAGCTGCAAACCCCTTTGAGTACTGTCAC
ATAGTCACAACCACTACTCACAAGAGCTTGCGGGGTCCTAGGGCTGGTAT
GATCTTCTACCGGAAGGGTCCTAAACCACCCAAGAAGGGCCAACCAGAGG
GTGCGGTTTATGACTTTGAAGACAAGATCAACTTTGCTGTCTTCCCATCC
CTTCAAGGTGGTCCTCACAACCACCAGATTGGTGCTCTAGCTGTTGCCCT
GAAACAGGCCTCGACCCCTGCATTCAAGGCCTATGCGAAACAAGTCAAGG
CCAATGCAGTTGCACTTGGGAACTACCTGACGGGCAAGGGATACAGCCTT
GTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGGGATCTACGCCCTCT
TGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGACCTTTGCAACATTA
CTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTGCCTTGGCCCCTGGA
GGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGAGGTTTGTTGGAGAA
GGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGCTGTGACCCTCACGT
TGGAAATTCAAAAGGAGTATGGAAA
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