CF834984

Overview
NameCF834984
Unique NameCF834984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5829 contig Csv1_Contig5829:711..1384. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_DICT6 (Serine hydroxymethyltransferase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=glyA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.044e-39
Identity = 88/197 (44.67%), Postives = 115/197 (58.38%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 643
            LVAA    +P  Y H VT+TTHK+LRGPR G I  +                +F  +I+ AVFP +QGGP  H I A AVA K+A TP FK Y KQ+  NA A+   L   GY LV+GGT+NHL+L DLR  G+TG + EK  +   ITVNKNA+ F         G+RIGTPA+T+RG+ E +   +   +H  ++
Sbjct:  204 LVAAGLHPSPVPYAHFVTSTTHKTLRGPRGGFILCKK---------------EFAKEIDKAVFPGIQGGPLMHVIAAKAVAFKEAMTPEFKEYQKQIILNAKAMAEELMRLGYRLVSGGTDNHLMLVDLRDKGITGKEAEKALEEAGITVNKNAIPFDPQPPTVTSGIRIGTPALTTRGMKEDEMRYVARLIHEVLS 385          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_PELTS (Serine hydroxymethyltransferase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=glyA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.976e-39
Identity = 91/196 (46.43%), Postives = 118/196 (60.20%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 640
            LVAA    +P  Y  +VTTTTHK+LRGPR G+I  +                 +  KIN AVFP +QGGP  H I A AVA K+A  P FK Y +++ +NA AL + L  +G+ LV+GGT+NHL+L DLR   +TG + ++L D   +TVNKNAV F         G+RIGTPA+TSRGL E D  QI E +  A+
Sbjct:  207 LVAAGLHMSPVPYADVVTTTTHKTLRGPRGGLILCKDAER-------------YGTKINRAVFPGVQGGPLMHVIAAKAVAFKEAMEPGFKEYQRKIVSNARALADALLERGFELVSGGTDNHLILVDLRSKKITGREAQELFDAVGVTVNKNAVPFDPQPPNIASGIRIGTPAVTSRGLNEDDMVQIAEIMDYAI 389          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_CHLTE (Serine hydroxymethyltransferase OS=Chlorobium tepidum GN=glyA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.976e-39
Identity = 91/201 (45.27%), Postives = 115/201 (57.21%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIF----YRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 643
            LVAA  +ANP  +CH VTTTTHK+LRGPR GMI     +               V    + I+  V P +QGGP  H I   AVA  +A  P FKAYA+Q+K NA A+       GY +V+GGT+NHL+L DLR   + G   E L     ITVNKN V F D S     G+RIGTPAMT+RG+   + E+I EF+ R ++
Sbjct:  206 LVAAGLSANPMPHCHFVTTTTHKTLRGPRGGMIMMGKDFENPLGLTINTKNGSRVKMMSEVIDAEVMPGIQGGPLMHIIAGKAVAFGEALQPEFKAYAQQIKDNAAAMAAKFLAAGYHIVSGGTKNHLMLLDLRNKNVNGKVAENLLHEAGITVNKNMVPFDDKSPFVTSGIRIGTPAMTTRGMKVAEAEKIVEFIDRVIS 406          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_DICTD (Serine hydroxymethyltransferase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=glyA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.781e-39
Identity = 88/197 (44.67%), Postives = 115/197 (58.38%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 643
            LVAA    +P  Y H VT+TTHK+LRGPR G I  +                +F  +I+ AVFP +QGGP  H I A AVA K+A +P FK Y KQ+  NA A+   L   GY LV+GGT+NHL+L DLR  G+TG + EK  +   ITVNKNA+ F         G+RIGTPA+T+RG+ E +   I   +H  ++
Sbjct:  204 LVAAGLHPSPVPYAHFVTSTTHKTLRGPRGGFILCKK---------------EFAKEIDKAVFPGIQGGPLMHVIAAKAVAFKEAMSPEFKEYQKQIVLNAKAMAEELIKLGYRLVSGGTDNHLMLVDLRDKGITGKEAEKALEEAGITVNKNAIPFDPQPPTITSGIRIGTPALTTRGMKEDEMRYIARLIHEVLS 385          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_BRASB (Serine hydroxymethyltransferase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=glyA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.781e-39
Identity = 88/192 (45.83%), Postives = 110/192 (57.29%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            LVA    A+P  + HIVTTTTHKSLRGPR G+I +                  F  K+N A+FP LQGGP  H I A AVA  +A  P FK YAK +  NA AL   L  +G+ +V+GGT+NHL+L DLRP GL GN  EK      IT NKN + F         G+R+GTPA T+RG    +F+Q+G  +
Sbjct:  220 LVAGGAHASPVPHAHIVTTTTHKSLRGPRGGLILWNDE--------------QFTKKLNSAIFPGLQGGPLMHVIAAKAVAFAEALRPEFKTYAKNIVENAKALAESLRAQGFDIVSGGTDNHLMLVDLRPKGLKGNVSEKALVRAGITCNKNGIPFDPEKPFVTSGLRLGTPAATTRGFGVAEFQQVGSLI 397          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_BRASO (Serine hydroxymethyltransferase OS=Bradyrhizobium sp. (strain ORS278) GN=glyA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 8.451e-39
Identity = 89/192 (46.35%), Postives = 109/192 (56.77%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            LVA    A+P  Y HI TTTTHKSLRGPR G++ +                  F  K N A+FP LQGGP  H I A AVA  +A  P FKAYAK V  NA AL   L  +G+ +V+GGT+NHL+L DLRP GL GN  EK      IT NKN + F         G+R+GTPA T+RG    +F+Q+G  +
Sbjct:  219 LVAGGVHASPVPYAHITTTTTHKSLRGPRGGLMLWNDE--------------QFTKKFNSAIFPGLQGGPLMHVIAAKAVAFAEALRPEFKAYAKNVVENAKALAESLRAQGFDIVSGGTDNHLMLVDLRPKGLKGNVSEKALVRAAITCNKNGIPFDPEKPFVTSGLRLGTPAATTRGFGVAEFQQVGSLI 396          

HSP 2 Score: 21.9422 bits (45), Expect = 8.451e-39
Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A LL DMAH +
Sbjct:  201 IADSVGAYLLVDMAHFA 217          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_CARHZ (Serine hydroxymethyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=glyA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 8.454e-39
Identity = 88/192 (45.83%), Postives = 118/192 (61.46%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            LVAA    +P  Y  +VTTTTHK+LRGPR G+IF +                +   KI+  VFP +QGGP  H I A AVA K+A +P F+ Y +QV  NA AL   L  +G  LV+GGT+NHL+L D+RP+GLTG + E+L D   +TVNKNA+ +   S     G+RIGTPA+T+RG+ E +  +I E +
Sbjct:  208 LVAAGLHPSPIPYADVVTTTTHKTLRGPRGGVIFCKA---------------EHAAKIDKTVFPGVQGGPLMHVIAAKAVAFKEALSPEFREYQQQVVNNAKALAEELKKQGLRLVSGGTDNHLMLVDVRPVGLTGKRAEQLLDEIGVTVNKNAIPYDPESPNVTSGIRIGTPAVTTRGMKEGEMAEIAEII 384          

HSP 2 Score: 22.7126 bits (47), Expect = 8.454e-39
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A L+ DMAHI+
Sbjct:  190 IADEVGAYLMVDMAHIA 206          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_CYAP8 (Serine hydroxymethyltransferase OS=Cyanothece sp. (strain PCC 8801) GN=glyA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.101e-38
Identity = 86/192 (44.79%), Postives = 115/192 (59.90%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            LVA     +P  YC +VTTTTHK+LRGPR G+I  R                D   + + AVFP  QGGP  H I A  VA  +A  P FKAY+ QV AN+ AL   L  +G+ LV+GGT+NHL+L DLR +G+TG + ++L    NIT NKN V F   S     G+R+G+PA+T+RG+ E +F++IG  +
Sbjct:  209 LVATGHHPSPISYCDVVTTTTHKTLRGPRGGLILTRDA--------------DLGKQFDKAVFPGTQGGPLEHVIAAKGVAFGEALKPQFKAYSGQVIANSRALAAQLMERGFKLVSGGTDNHLMLVDLRSIGMTGKEADRLVSEINITANKNTVPFDPESPFVTSGLRLGSPALTTRGMGESEFKEIGNII 386          

HSP 2 Score: 21.9422 bits (45), Expect = 1.101e-38
Identity = 8/17 (47.06%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A L+ D+AHI+
Sbjct:  191 IADEIGAYLMADIAHIA 207          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_ALKOO (Serine hydroxymethyltransferase OS=Alkaliphilus oremlandii (strain OhILAs) GN=glyA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.102e-38
Identity = 88/192 (45.83%), Postives = 113/192 (58.85%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            LVAA    NP +Y   VTTTTHK+LRGPR G I  +                 +   I+ A+FP LQGGP  H I A AV+ K+A +P FKAY +QV  NA  LG  L  +G++LV+GGT+NHL+L DLR   +TG   EKL D   +TVNKN + +   S     G+RIGTPA+T+RG+ E D   I E +
Sbjct:  206 LVAAGLHENPCDYADFVTTTTHKTLRGPRGGAILCKEK---------------YAKMIDKAIFPGLQGGPLMHVIAAKAVSFKEALSPEFKAYQEQVIKNAAKLGEELKSRGFNLVSGGTDNHLLLLDLRNKNITGKDAEKLLDEVGVTVNKNTIPYDPESPFVTSGIRIGTPAVTTRGMKEDDMVTIAEII 382          

HSP 2 Score: 22.7126 bits (47), Expect = 1.102e-38
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A L+ DMAHI+
Sbjct:  188 IADEVGAYLMVDMAHIA 204          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA2_PHOPR (Serine hydroxymethyltransferase 2 OS=Photobacterium profundum GN=glyA2 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.157e-38
Identity = 90/205 (43.90%), Postives = 112/205 (54.63%), Query Frame = 2
Query:   17 GPFCSVIWLISVALVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            G F  V       L+AA E  +P  + H++TTTTHK+LRGPR GMI                 + D   KIN AVFP LQGGP  H I   AVA  +A  P FK Y K V +NA  L   L  +G  +VT GT+ HL+L DLRP GL GN  E   +   IT NKN + F     +   G+R+GTPA TSRG    +F+QIGE++
Sbjct:  205 GAFLMVDMAHIAGLIAAGEHPSPIPHAHVITTTTHKTLRGPRGGMILTN--------------LEDINKKINSAVFPGLQGGPLMHVIAGKAVAFGEALEPDFKIYIKNVISNAKVLAEVLQNRGCDIVTNGTDTHLMLVDLRPKGLKGNAAENALERAGITCNKNGIPFDTEKPMVTSGIRLGTPAGTSRGFGNDEFKQIGEWI 395          
The following BLAST results are available for this feature:
BLAST of CF834984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_DICT63.044e-3944.67Serine hydroxymethyltransferase OS=Dictyoglomus th... [more]
GLYA_PELTS3.976e-3946.43Serine hydroxymethyltransferase OS=Pelotomaculum t... [more]
GLYA_CHLTE3.976e-3945.27Serine hydroxymethyltransferase OS=Chlorobium tepi... [more]
GLYA_DICTD6.781e-3944.67Serine hydroxymethyltransferase OS=Dictyoglomus tu... [more]
GLYA_BRASB6.781e-3945.83Serine hydroxymethyltransferase OS=Bradyrhizobium ... [more]
GLYA_BRASO8.451e-3946.35Serine hydroxymethyltransferase OS=Bradyrhizobium ... [more]
GLYA_CARHZ8.454e-3945.83Serine hydroxymethyltransferase OS=Carboxydothermu... [more]
GLYA_CYAP81.101e-3844.79Serine hydroxymethyltransferase OS=Cyanothece sp. ... [more]
GLYA_ALKOO1.102e-3845.83Serine hydroxymethyltransferase OS=Alkaliphilus or... [more]
GLYA2_PHOPR1.157e-3843.90Serine hydroxymethyltransferase 2 OS=Photobacteriu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834984 ID=CF834984; Name=CF834984; organism=Citrus sinensis; type=EST; length=675bp
GTTGCTGATCCCTTAAGGGCCCTTTTGCTCTGTGATATGGCTCATATCAG
TCGCTCTTGTTGCTGCTCAGGAAGCTGCAAACCCCTTTGAGTACTGTCAC
ATAGTCACAACCACTACTCACAAGAGCTTGCGGGGTCCTAGGGCTGGTAT
GATCTTCTACCGGAAGGGTCCTAAACCACCCAAGAAGGGCCAACCAGAGG
GTGCGGTTTATGACTTTGAAGACAAGATCAACTTTGCTGTCTTCCCATCC
CTTCAAGGTGGTCCTCACAACCACCAGATTGGTGCTCTAGCTGTTGCCCT
GAAACAGGCCTCGACCCCTGCATTCAAGGCCTATGCGAAACAAGTCAAGG
CCAATGCAGTTGCACTTGGGAACTACCTGACGGGCAAGGGATACAGCCTT
GTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGGGATCTACGCCCTCT
TGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGACCTTTGCAACATTA
CTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTGCCTTGGCCCCTGGA
GGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGAGGTTTGTTGGAGAA
GGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGCTGTGACCCTCACGT
TGGAAATTCAAAAGGAGTATGGAAA
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