CF834984

Overview
NameCF834984
Unique NameCF834984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5829 contig Csv1_Contig5829:711..1384. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_CLOPH (Serine hydroxymethyltransferase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=glyA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.435e-38
Identity = 86/196 (43.88%), Postives = 117/196 (59.69%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 640
            LVAA    +P  Y H+ TTTTHK+LRGPR GMI                  +  E K+N ++FP  QGGP  H I A A+  K+A   +FK YA ++ +NA AL N LT +G++LV+GGT+NHL+L DL+ + +TG + E + D  NIT NKN V  D +S     G+R+GTPA+T+RG  EKD   + E +   V
Sbjct:  206 LVAAGYHQSPIPYAHVTTTTTHKTLRGPRGGMIL-------------SSEEFAEEHKLNKSIFPGTQGGPLMHVIAAKAICFKEALDDSFKDYAGKIISNAGALANELTARGFNLVSGGTDNHLMLIDLQNMNITGKEAEHILDEANITCNKNTVPNDPASPFVTSGIRLGTPAITTRGFNEKDMAVVAEAISLVV 388          

HSP 2 Score: 21.9422 bits (45), Expect = 1.435e-38
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A L+ DMAHI+
Sbjct:  188 IADLVGAYLMVDMAHIA 204          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_THELT (Serine hydroxymethyltransferase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=glyA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.577e-38
Identity = 88/201 (43.78%), Postives = 117/201 (58.21%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLE 655
            LVAA    NP EY HIVT+TTHK+LRGPR G+I              +  +Y     +N  VFP  QGGP  H I A AV  K+A +  F  Y KQV ANA  L N L+  G  +V+GGT+ HL+L DL PL +TG   EK  + C +TVNKN +  ++ S     G+RIGTPA+T+RG+ EK+ ++I E +   +   L+
Sbjct:  205 LVAAGLYPNPAEYAHIVTSTTHKTLRGPRGGLILTN-----------DAEIYK---AVNKTVFPGTQGGPLMHVIAAKAVCFKEAMSSGFVEYQKQVIANAKTLANELSSMGLRIVSGGTDTHLMLVDLTPLNVTGKAAEKALEKCGVTVNKNTIPNETRSPFVASGIRIGTPAVTTRGMREKEMKKIAELIFEVLKNVLD 391          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_POLNS (Serine hydroxymethyltransferase OS=Polynucleobacter necessarius (strain STIR1) GN=glyA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.577e-38
Identity = 87/192 (45.31%), Postives = 115/192 (59.90%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            LVAA    NP  +  IVT+TTHKSLRGPR G+I  +                + E  INFAVFP LQGGP  H I A AVA K+A+ P FK Y KQV ANA AL   L  +G  +V+GGT++H++L DLR   +TG + E++    +IT NKN +  D    +   G+R+G+PAMT+RG  E +  Q+G F+
Sbjct:  207 LVAAGVYPNPVPHADIVTSTTHKSLRGPRGGIILMKA---------------EHEKAINFAVFPGLQGGPLMHVIAAKAVAFKEAAEPGFKDYQKQVVANAKALAETLIARGLRIVSGGTDSHVMLVDLRAKSMTGKEAERVLGEAHITCNKNGIPNDPEKPMVTSGIRLGSPAMTTRGFKEAEARQVGNFI 383          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_SILST (Serine hydroxymethyltransferase OS=Silicibacter sp. (strain TM1040) GN=glyA PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.172e-38
Identity = 87/196 (44.39%), Postives = 112/196 (57.14%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 640
            LVAA E  +PF +  + TTTTHK+LRGPR GMI                   D   K N A+FP +QGGP  H I   A A  +A  P FK+Y KQV+ANAVAL + L   G  +VTGGT+ H++L DLRP G+TGN V+K     +IT NKN + F         G+R+GTPA T+RG  E++F +I   +   V
Sbjct:  215 LVAAGEHPSPFPHADVATTTTHKTLRGPRGGMILTNNP--------------DLAKKFNSAIFPGIQGGPLMHVIAGKAAAFGEALKPEFKSYQKQVRANAVALADELIKGGLDIVTGGTDTHVMLVDLRPKGVTGNIVDKALGRAHITTNKNGIPFDPEKPTVTSGIRLGTPAGTTRGFGEEEFREIARLIVEVV 396          

HSP 2 Score: 21.9422 bits (45), Expect = 3.172e-38
Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A LL DMAH +
Sbjct:  197 IADSVGAYLLVDMAHFA 213          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA2_RALSO (Serine hydroxymethyltransferase 2 OS=Ralstonia solanacearum GN=glyA2 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.133e-38
Identity = 87/192 (45.31%), Postives = 108/192 (56.25%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            ++AA    NP ++ H+VT+TTHK+LRGPR G +                   +   KIN AVFP LQGGP  H I   AVA  +A  P FK Y   V ANA ALG  L   G  LVTGGT+NHL+L DLRP GL G +VE+  +   IT NKN + F         G+R+GTPA T+RG    +FEQIG  +
Sbjct:  212 VIAAGRHDNPVDHAHVVTSTTHKTLRGPRGGFVLTNDE--------------EIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALKPEFKTYIDSVLANAKALGEVLKAGGVDLVTGGTDNHLLLVDLRPKGLKGTQVEQALERAGITCNKNGIPFDTEKPTITSGIRLGTPAATTRGFGVAEFEQIGRLI 389          

HSP 2 Score: 22.3274 bits (46), Expect = 4.133e-38
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A L+ DMAHI+
Sbjct:  194 IADSVGAKLMVDMAHIA 210          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_BACHD (Serine hydroxymethyltransferase OS=Bacillus halodurans GN=glyA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.134e-38
Identity = 92/201 (45.77%), Postives = 116/201 (57.71%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLE 655
            LVAA    NP  + H VTTTTHK+LRGPR GMI                   +F  +I+ ++FP +QGGP  H I A AVA  +A  P FK+Y + +  NA  LG  LT +G  LV+GGT+NHL+L DLR LGLTG   EK  D   IT NKN + F   S     G+RIGT A+TSRGL E+  ++IG      + LTL+
Sbjct:  204 LVAAGLHQNPVPHSHFVTTTTHKTLRGPRGGMIICNE---------------EFAKQIDKSIFPGIQGGPLMHVIAAKAVAFGEALQPEFKSYGEAIIRNAKRLGEKLTSEGIDLVSGGTDNHLLLLDLRSLGLTGKVAEKALDDVGITTNKNTIPFDPESPFVTSGIRIGTAAVTSRGLDEEAMDEIG----ATIALTLK 385          

HSP 2 Score: 22.7126 bits (47), Expect = 4.134e-38
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A L+ DMAHI+
Sbjct:  186 IADEVGAYLMVDMAHIA 202          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_FERNB (Serine hydroxymethyltransferase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=glyA PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.395e-38
Identity = 87/207 (42.03%), Postives = 119/207 (57.49%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG 673
            LVAA    NP EY H+VT+TTHK+LRGPR G+I                   +    IN A+FP +QGGP  H I A AV  K+A +  FKAY  Q+  NA AL   L  +G  +V+GGT+ HL+L DL PL +TG   E     C+ITVNKN +  ++ S     G+R+GTPA+T+RG+ E+  E+I + +   VT+   ++ E G
Sbjct:  205 LVAAGIYPNPLEYAHVVTSTTHKTLRGPRGGLILTNDE--------------EIYKAINKAIFPGIQGGPLMHVIAAKAVCFKEALSDEFKAYQNQIVKNAKALAKALENRGLRIVSGGTDTHLMLVDLNPLNVTGKAAETALGYCHITVNKNTIPNETRSPFVASGIRLGTPALTTRGMKEEQMEEIADLI---VTVLKNVKDEEG 394          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA1_RHILO (Serine hydroxymethyltransferase 1 OS=Rhizobium loti GN=glyA1 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 5.382e-38
Identity = 88/192 (45.83%), Postives = 109/192 (56.77%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            LVA     +P  + H+VTTTTHKSLRGPR GMI                   D   K+N AVFP LQGGP  H I A AVA  +A  P+FK YA+ V ANA AL + L   G  +V+GGT+NHL+L DLRP   TG + E      NIT NKN + F         GVR+GTPA T+RG  + +F +IG+ +
Sbjct:  219 LVAGGVHPSPLPHAHVVTTTTHKSLRGPRGGMILCNDE--------------DIAKKMNSAVFPGLQGGPLMHVIAAKAVAFGEALKPSFKVYAESVAANAKALASSLKETGLDIVSGGTDNHLMLVDLRPKNATGKRAEAALGRANITCNKNGIPFDPEKPFVTSGVRLGTPAGTTRGFGQAEFREIGKLI 396          

HSP 2 Score: 22.7126 bits (47), Expect = 5.382e-38
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A L+ DMAHI+
Sbjct:  201 IADAVGAYLMVDMAHIA 217          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_WOLSU (Serine hydroxymethyltransferase OS=Wolinella succinogenes GN=glyA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 5.385e-38
Identity = 88/188 (46.81%), Postives = 111/188 (59.04%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQI 616
            L+ A E  NPF +CHIVTTTTHK+LRGPR GMI                   +   KI+ AVFP +QGGP  H I A AV   +   P +K YAKQVKANA  L   L  +GY+LV+GGT+NHL+L  L     +G   ++      ITVNKN V G++ S     GVRIG+ A+T+RG+ EK+FE I
Sbjct:  204 LIVAGEYPNPFPHCHIVTTTTHKTLRGPRGGMILTNDE--------------EIAKKIDKAVFPGMQGGPLMHVIAAKAVGFGENLKPEWKEYAKQVKANAKVLAKVLMARGYTLVSGGTDNHLILVSLLDKEFSGKDADRALGEAGITVNKNTVPGETRSPFVTSGVRIGSAALTARGMREKEFEFI 377          

HSP 2 Score: 22.7126 bits (47), Expect = 5.385e-38
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + ALLL D+AH++
Sbjct:  186 IADSVGALLLGDVAHVA 202          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_CHLAD (Serine hydroxymethyltransferase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 5.385e-38
Identity = 86/192 (44.79%), Postives = 115/192 (59.90%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            LVA  E  +P  + HI+TTTTHK+LRGPR G+I                   +F  +IN +VFP  QGGP  H I   AVA  +A  P FK YA Q++ NA AL   L  +G +LV+GGT+NHL+L DLR  GLTG + ++  D   ITVNKNA+  D    +   G+RIGTPA+T+RG+ E++  QI  ++
Sbjct:  205 LVATGEHPSPVGHAHIITTTTHKTLRGPRGGLILMGE---------------EFAKQINSSVFPGTQGGPLMHVIAGKAVAFGEALRPEFKQYAAQIRRNAKALAEGLHAQGLTLVSGGTDNHLMLVDLRSTGLTGAQAQRALDKAAITVNKNAIPDDPQPPMKTSGIRIGTPAVTTRGMREREMAQIAAWI 381          

HSP 2 Score: 23.483 bits (49), Expect = 5.385e-38
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + ALL+ D+AHI+
Sbjct:  187 IADEVGALLMADIAHIA 203          
The following BLAST results are available for this feature:
BLAST of CF834984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CLOPH1.435e-3843.88Serine hydroxymethyltransferase OS=Clostridium phy... [more]
GLYA_THELT2.577e-3843.78Serine hydroxymethyltransferase OS=Thermotoga lett... [more]
GLYA_POLNS2.577e-3845.31Serine hydroxymethyltransferase OS=Polynucleobacte... [more]
GLYA_SILST3.172e-3844.39Serine hydroxymethyltransferase OS=Silicibacter sp... [more]
GLYA2_RALSO4.133e-3845.31Serine hydroxymethyltransferase 2 OS=Ralstonia sol... [more]
GLYA_BACHD4.134e-3845.77Serine hydroxymethyltransferase OS=Bacillus halodu... [more]
GLYA_FERNB4.395e-3842.03Serine hydroxymethyltransferase OS=Fervidobacteriu... [more]
GLYA1_RHILO5.382e-3845.83Serine hydroxymethyltransferase 1 OS=Rhizobium lot... [more]
GLYA_WOLSU5.385e-3846.81Serine hydroxymethyltransferase OS=Wolinella succi... [more]
GLYA_CHLAD5.385e-3844.79Serine hydroxymethyltransferase OS=Chloroflexus ag... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834984 ID=CF834984; Name=CF834984; organism=Citrus sinensis; type=EST; length=675bp
GTTGCTGATCCCTTAAGGGCCCTTTTGCTCTGTGATATGGCTCATATCAG
TCGCTCTTGTTGCTGCTCAGGAAGCTGCAAACCCCTTTGAGTACTGTCAC
ATAGTCACAACCACTACTCACAAGAGCTTGCGGGGTCCTAGGGCTGGTAT
GATCTTCTACCGGAAGGGTCCTAAACCACCCAAGAAGGGCCAACCAGAGG
GTGCGGTTTATGACTTTGAAGACAAGATCAACTTTGCTGTCTTCCCATCC
CTTCAAGGTGGTCCTCACAACCACCAGATTGGTGCTCTAGCTGTTGCCCT
GAAACAGGCCTCGACCCCTGCATTCAAGGCCTATGCGAAACAAGTCAAGG
CCAATGCAGTTGCACTTGGGAACTACCTGACGGGCAAGGGATACAGCCTT
GTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGGGATCTACGCCCTCT
TGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGACCTTTGCAACATTA
CTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTGCCTTGGCCCCTGGA
GGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGAGGTTTGTTGGAGAA
GGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGCTGTGACCCTCACGT
TGGAAATTCAAAAGGAGTATGGAAA
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