CF834984
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_CLOPH (Serine hydroxymethyltransferase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=glyA PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 1.435e-38 Identity = 86/196 (43.88%), Postives = 117/196 (59.69%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 640 LVAA +P Y H+ TTTTHK+LRGPR GMI + E K+N ++FP QGGP H I A A+ K+A +FK YA ++ +NA AL N LT +G++LV+GGT+NHL+L DL+ + +TG + E + D NIT NKN V D +S G+R+GTPA+T+RG EKD + E + V Sbjct: 206 LVAAGYHQSPIPYAHVTTTTTHKTLRGPRGGMIL-------------SSEEFAEEHKLNKSIFPGTQGGPLMHVIAAKAICFKEALDDSFKDYAGKIISNAGALANELTARGFNLVSGGTDNHLMLIDLQNMNITGKEAEHILDEANITCNKNTVPNDPASPFVTSGIRLGTPAITTRGFNEKDMAVVAEAISLVV 388 HSP 2 Score: 21.9422 bits (45), Expect = 1.435e-38 Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 1 Query: 1 VADPLRALLLCDMAHIS 51 +AD + A L+ DMAHI+ Sbjct: 188 IADLVGAYLMVDMAHIA 204
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_THELT (Serine hydroxymethyltransferase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=glyA PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 2.577e-38 Identity = 88/201 (43.78%), Postives = 117/201 (58.21%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLE 655 LVAA NP EY HIVT+TTHK+LRGPR G+I + +Y +N VFP QGGP H I A AV K+A + F Y KQV ANA L N L+ G +V+GGT+ HL+L DL PL +TG EK + C +TVNKN + ++ S G+RIGTPA+T+RG+ EK+ ++I E + + L+ Sbjct: 205 LVAAGLYPNPAEYAHIVTSTTHKTLRGPRGGLILTN-----------DAEIYK---AVNKTVFPGTQGGPLMHVIAAKAVCFKEAMSSGFVEYQKQVIANAKTLANELSSMGLRIVSGGTDTHLMLVDLTPLNVTGKAAEKALEKCGVTVNKNTIPNETRSPFVASGIRIGTPAVTTRGMREKEMKKIAELIFEVLKNVLD 391
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_POLNS (Serine hydroxymethyltransferase OS=Polynucleobacter necessarius (strain STIR1) GN=glyA PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 2.577e-38 Identity = 87/192 (45.31%), Postives = 115/192 (59.90%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628 LVAA NP + IVT+TTHKSLRGPR G+I + + E INFAVFP LQGGP H I A AVA K+A+ P FK Y KQV ANA AL L +G +V+GGT++H++L DLR +TG + E++ +IT NKN + D + G+R+G+PAMT+RG E + Q+G F+ Sbjct: 207 LVAAGVYPNPVPHADIVTSTTHKSLRGPRGGIILMKA---------------EHEKAINFAVFPGLQGGPLMHVIAAKAVAFKEAAEPGFKDYQKQVVANAKALAETLIARGLRIVSGGTDSHVMLVDLRAKSMTGKEAERVLGEAHITCNKNGIPNDPEKPMVTSGIRLGSPAMTTRGFKEAEARQVGNFI 383
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_SILST (Serine hydroxymethyltransferase OS=Silicibacter sp. (strain TM1040) GN=glyA PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 3.172e-38 Identity = 87/196 (44.39%), Postives = 112/196 (57.14%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 640 LVAA E +PF + + TTTTHK+LRGPR GMI D K N A+FP +QGGP H I A A +A P FK+Y KQV+ANAVAL + L G +VTGGT+ H++L DLRP G+TGN V+K +IT NKN + F G+R+GTPA T+RG E++F +I + V Sbjct: 215 LVAAGEHPSPFPHADVATTTTHKTLRGPRGGMILTNNP--------------DLAKKFNSAIFPGIQGGPLMHVIAGKAAAFGEALKPEFKSYQKQVRANAVALADELIKGGLDIVTGGTDTHVMLVDLRPKGVTGNIVDKALGRAHITTNKNGIPFDPEKPTVTSGIRLGTPAGTTRGFGEEEFREIARLIVEVV 396 HSP 2 Score: 21.9422 bits (45), Expect = 3.172e-38 Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 1 Query: 1 VADPLRALLLCDMAHIS 51 +AD + A LL DMAH + Sbjct: 197 IADSVGAYLLVDMAHFA 213
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA2_RALSO (Serine hydroxymethyltransferase 2 OS=Ralstonia solanacearum GN=glyA2 PE=3 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 4.133e-38 Identity = 87/192 (45.31%), Postives = 108/192 (56.25%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628 ++AA NP ++ H+VT+TTHK+LRGPR G + + KIN AVFP LQGGP H I AVA +A P FK Y V ANA ALG L G LVTGGT+NHL+L DLRP GL G +VE+ + IT NKN + F G+R+GTPA T+RG +FEQIG + Sbjct: 212 VIAAGRHDNPVDHAHVVTSTTHKTLRGPRGGFVLTNDE--------------EIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALKPEFKTYIDSVLANAKALGEVLKAGGVDLVTGGTDNHLLLVDLRPKGLKGTQVEQALERAGITCNKNGIPFDTEKPTITSGIRLGTPAATTRGFGVAEFEQIGRLI 389 HSP 2 Score: 22.3274 bits (46), Expect = 4.133e-38 Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 1 Query: 1 VADPLRALLLCDMAHIS 51 +AD + A L+ DMAHI+ Sbjct: 194 IADSVGAKLMVDMAHIA 210
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_BACHD (Serine hydroxymethyltransferase OS=Bacillus halodurans GN=glyA PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 4.134e-38 Identity = 92/201 (45.77%), Postives = 116/201 (57.71%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLE 655 LVAA NP + H VTTTTHK+LRGPR GMI +F +I+ ++FP +QGGP H I A AVA +A P FK+Y + + NA LG LT +G LV+GGT+NHL+L DLR LGLTG EK D IT NKN + F S G+RIGT A+TSRGL E+ ++IG + LTL+ Sbjct: 204 LVAAGLHQNPVPHSHFVTTTTHKTLRGPRGGMIICNE---------------EFAKQIDKSIFPGIQGGPLMHVIAAKAVAFGEALQPEFKSYGEAIIRNAKRLGEKLTSEGIDLVSGGTDNHLLLLDLRSLGLTGKVAEKALDDVGITTNKNTIPFDPESPFVTSGIRIGTAAVTSRGLDEEAMDEIG----ATIALTLK 385 HSP 2 Score: 22.7126 bits (47), Expect = 4.134e-38 Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 1 Query: 1 VADPLRALLLCDMAHIS 51 +AD + A L+ DMAHI+ Sbjct: 186 IADEVGAYLMVDMAHIA 202
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_FERNB (Serine hydroxymethyltransferase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=glyA PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 4.395e-38 Identity = 87/207 (42.03%), Postives = 119/207 (57.49%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG 673 LVAA NP EY H+VT+TTHK+LRGPR G+I + IN A+FP +QGGP H I A AV K+A + FKAY Q+ NA AL L +G +V+GGT+ HL+L DL PL +TG E C+ITVNKN + ++ S G+R+GTPA+T+RG+ E+ E+I + + VT+ ++ E G Sbjct: 205 LVAAGIYPNPLEYAHVVTSTTHKTLRGPRGGLILTNDE--------------EIYKAINKAIFPGIQGGPLMHVIAAKAVCFKEALSDEFKAYQNQIVKNAKALAKALENRGLRIVSGGTDTHLMLVDLNPLNVTGKAAETALGYCHITVNKNTIPNETRSPFVASGIRLGTPALTTRGMKEEQMEEIADLI---VTVLKNVKDEEG 394
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA1_RHILO (Serine hydroxymethyltransferase 1 OS=Rhizobium loti GN=glyA1 PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 5.382e-38 Identity = 88/192 (45.83%), Postives = 109/192 (56.77%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628 LVA +P + H+VTTTTHKSLRGPR GMI D K+N AVFP LQGGP H I A AVA +A P+FK YA+ V ANA AL + L G +V+GGT+NHL+L DLRP TG + E NIT NKN + F GVR+GTPA T+RG + +F +IG+ + Sbjct: 219 LVAGGVHPSPLPHAHVVTTTTHKSLRGPRGGMILCNDE--------------DIAKKMNSAVFPGLQGGPLMHVIAAKAVAFGEALKPSFKVYAESVAANAKALASSLKETGLDIVSGGTDNHLMLVDLRPKNATGKRAEAALGRANITCNKNGIPFDPEKPFVTSGVRLGTPAGTTRGFGQAEFREIGKLI 396 HSP 2 Score: 22.7126 bits (47), Expect = 5.382e-38 Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 1 Query: 1 VADPLRALLLCDMAHIS 51 +AD + A L+ DMAHI+ Sbjct: 201 IADAVGAYLMVDMAHIA 217
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_WOLSU (Serine hydroxymethyltransferase OS=Wolinella succinogenes GN=glyA PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 5.385e-38 Identity = 88/188 (46.81%), Postives = 111/188 (59.04%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQI 616 L+ A E NPF +CHIVTTTTHK+LRGPR GMI + KI+ AVFP +QGGP H I A AV + P +K YAKQVKANA L L +GY+LV+GGT+NHL+L L +G ++ ITVNKN V G++ S GVRIG+ A+T+RG+ EK+FE I Sbjct: 204 LIVAGEYPNPFPHCHIVTTTTHKTLRGPRGGMILTNDE--------------EIAKKIDKAVFPGMQGGPLMHVIAAKAVGFGENLKPEWKEYAKQVKANAKVLAKVLMARGYTLVSGGTDNHLILVSLLDKEFSGKDADRALGEAGITVNKNTVPGETRSPFVTSGVRIGSAALTARGMREKEFEFI 377 HSP 2 Score: 22.7126 bits (47), Expect = 5.385e-38 Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 1 Query: 1 VADPLRALLLCDMAHIS 51 +AD + ALLL D+AH++ Sbjct: 186 IADSVGALLLGDVAHVA 202
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_CHLAD (Serine hydroxymethyltransferase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=glyA PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 5.385e-38 Identity = 86/192 (44.79%), Postives = 115/192 (59.90%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628 LVA E +P + HI+TTTTHK+LRGPR G+I +F +IN +VFP QGGP H I AVA +A P FK YA Q++ NA AL L +G +LV+GGT+NHL+L DLR GLTG + ++ D ITVNKNA+ D + G+RIGTPA+T+RG+ E++ QI ++ Sbjct: 205 LVATGEHPSPVGHAHIITTTTHKTLRGPRGGLILMGE---------------EFAKQINSSVFPGTQGGPLMHVIAGKAVAFGEALRPEFKQYAAQIRRNAKALAEGLHAQGLTLVSGGTDNHLMLVDLRSTGLTGAQAQRALDKAAITVNKNAIPDDPQPPMKTSGIRIGTPAVTTRGMREREMAQIAAWI 381 HSP 2 Score: 23.483 bits (49), Expect = 5.385e-38 Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 1 Query: 1 VADPLRALLLCDMAHIS 51 +AD + ALL+ D+AHI+ Sbjct: 187 IADEVGALLMADIAHIA 203 The following BLAST results are available for this feature:
BLAST of CF834984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834984 ID=CF834984; Name=CF834984; organism=Citrus sinensis; type=EST; length=675bpback to top |