CF834984

Overview
NameCF834984
Unique NameCF834984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5829 contig Csv1_Contig5829:711..1384. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_CHLP8 (Serine hydroxymethyltransferase OS=Chlorobaculum parvum (strain NCIB 8327) GN=glyA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.792e-38
Identity = 89/201 (44.28%), Postives = 114/201 (56.72%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIF----YRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 643
            LVAA  +ANP  +CH VTTTTHK+LRGPR GMI     +               V    + I+  V P +QGGP  H I   AVA  +A  P FKAYA+Q+K NA A+        Y +V+GGT+NHL+L DLR   + G   E L     ITVNKN V F D S     G+R+GTPAMT+RG+   + E+I EF+ R ++
Sbjct:  206 LVAAGLSANPVPHCHFVTTTTHKTLRGPRGGMIMMGKDFENPMGITVNTKNGPRVKMMSEVIDAEVMPGIQGGPLMHIIAGKAVAFGEALQPEFKAYAQQIKDNAAAMAAKFLAADYHIVSGGTKNHLMLLDLRNKNVNGKVAENLLHDAGITVNKNMVPFDDKSPFVTSGIRVGTPAMTTRGMKVAEAEKIVEFIDRVIS 406          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_MICAN (Serine hydroxymethyltransferase OS=Microcystis aeruginosa (strain NIES-843) GN=glyA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.190e-37
Identity = 85/192 (44.27%), Postives = 112/192 (58.33%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            LVA     NP  +C +VTTTTHK+LRGPR G+I  +                +   K + +VFP  QGGP  H + A AVA  +A  P FK Y+ QV ANA AL   L  +G  +VT GT+NHL+L DLR +G+TG + ++L    NIT NKN V F   S     G+R+G+PAMT+RGL E +F +IG  +
Sbjct:  209 LVATGHHPNPLPHCDVVTTTTHKTLRGPRGGLIMTKDE--------------ELGKKFDKSVFPGTQGGPLEHVVAAKAVAFGEALKPEFKIYSGQVIANAQALAGQLKARGIKIVTDGTDNHLMLLDLRSVGMTGKEADRLVSTINITANKNTVPFDPESPFVTSGLRLGSPAMTTRGLGETEFIEIGNII 386          

HSP 2 Score: 21.557 bits (44), Expect = 1.190e-37
Identity = 8/17 (47.06%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A L+ D+AHI+
Sbjct:  191 IADEVGAYLMADIAHIA 207          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_GEOBB (Serine hydroxymethyltransferase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.191e-37
Identity = 89/192 (46.35%), Postives = 108/192 (56.25%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            LVAA    +P  Y   VTTTTHK+LRGPR GMI  R                D+   +N  +FP +QGGP  H I A AVA K+A TP FK Y  Q+  NA AL   LT +G+ L +GGT+NHL+L DL    LTG   E+  D   ITVNKN + F   S     G+RIGTPA TS GL E + EQ+  F+
Sbjct:  204 LVAAGLHPSPVPYAEFVTTTTHKTLRGPRGGMIMCRE---------------DWAKTLNSNIFPGIQGGPLMHVIAAKAVAFKEALTPEFKQYQGQIVKNAKALAEGLTKRGFKLTSGGTDNHLMLVDLSQTELTGKVAEEALDRAGITVNKNGIPFDTRSPFITSGIRIGTPAATSHGLKEAEMEQVAGFI 380          

HSP 2 Score: 22.3274 bits (46), Expect = 1.191e-37
Identity = 8/17 (47.06%), Postives = 14/17 (82.35%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A+++ DMAHI+
Sbjct:  186 IADKVGAVVMVDMAHIA 202          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_RICPU (Serine hydroxymethyltransferase OS=Rickettsia peacockii (strain Rustic) GN=glyA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.279e-37
Identity = 86/192 (44.79%), Postives = 113/192 (58.85%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            LVA  E  +P  Y H VT+TTHK+LRGPR G+I  +                +   KIN A+FP LQGGP  H I A AVA  +   P +K+Y +QV +NA AL + L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  EKDF  +G  +
Sbjct:  208 LVATGEHQSPIPYAHAVTSTTHKTLRGPRGGLILSKDE--------------EIGHKINSALFPGLQGGPLMHIIAAKAVAFLENLQPEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGHMV 385          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA2_SULDN (Serine hydroxymethyltransferase 2 OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.279e-37
Identity = 88/188 (46.81%), Postives = 112/188 (59.57%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQI 616
            LVAA E  +PF + H+VTTTTHK+LRGPR GMI                   +   KIN A+FP +QGGP  H I A AVA K+   P+++ YAKQVKANA  L   LT +GY LV+GGT+NHLVL        +G   +   +   ITVNKN V  D+ S     G+RIG+PA+T+RG+ E +FE I
Sbjct:  208 LVAADEHMSPFPHAHVVTTTTHKTLRGPRGGMIMTDDE--------------EIAKKINSAIFPGIQGGPLVHVIAAKAVAFKEILDPSWREYAKQVKANAKVLEVVLTKRGYDLVSGGTDNHLVLVSFLNRDFSGKDADAALERAGITVNKNGVPNDTRSPFITSGIRIGSPALTARGMKEAEFELI 381          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA1_RHIME (Serine hydroxymethyltransferase 1 OS=Rhizobium meliloti GN=glyA1 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.550e-37
Identity = 86/192 (44.79%), Postives = 107/192 (55.73%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            LVA  +  +PF +CH+ TTTTHKSLRGPR GMI                   +   KIN AVFP LQGGP  H I A AVAL +A  P+FK YA QV  NA  L   L   G  +V+GGT+NHL+L DLR    TG + E       +T NKN + F         GVR+G PA T+RG  E +F+++GE +
Sbjct:  214 LVAGGQHPSPFPHCHVATTTTHKSLRGPRGGMILTNDE--------------EIAKKINSAVFPGLQGGPLMHVIAAKAVALGEALQPSFKDYAAQVVKNARTLAETLKANGLDIVSGGTDNHLMLVDLRKKNATGKRAEAALGRAYVTCNKNGIPFDPEKPFVTSGVRLGAPAGTTRGFKEAEFKEVGELI 391          

HSP 2 Score: 22.3274 bits (46), Expect = 1.550e-37
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A L+ DMAHI+
Sbjct:  196 IADEVGAWLMVDMAHIA 212          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_GEOSM (Serine hydroxymethyltransferase OS=Geobacter sp. (strain M21) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.551e-37
Identity = 88/192 (45.83%), Postives = 109/192 (56.77%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            LVAA    +P  Y   VTTTTHK+LRGPR GMI  R                ++   +N  +FP +QGGP  H I A AVA K+A TP FK Y +Q+  NA AL   LT +G+ L +GGT+NHL+L DL    LTG   E+  D   ITVNKN + F   S     G+RIGTPA TS GL E + EQ+  F+
Sbjct:  204 LVAAGLHPSPVPYAEFVTTTTHKTLRGPRGGMIMCRE---------------EWAKTLNSNIFPGIQGGPLMHVIAAKAVAFKEALTPEFKKYQEQIVKNAKALAEGLTKRGFKLTSGGTDNHLMLVDLSQTELTGKVAEEALDRAGITVNKNGIPFDTRSPFITSGIRIGTPAATSHGLKEAEMEQVAGFI 380          

HSP 2 Score: 22.3274 bits (46), Expect = 1.551e-37
Identity = 8/17 (47.06%), Postives = 14/17 (82.35%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A+++ DMAHI+
Sbjct:  186 IADKVGAVVMVDMAHIA 202          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_OCEIH (Serine hydroxymethyltransferase OS=Oceanobacillus iheyensis GN=glyA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.551e-37
Identity = 88/201 (43.78%), Postives = 118/201 (58.71%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLE 655
            LVA  E  NP  +   VTTTTHK+LRGPR GMI  +                +F  K++ A+FP +QGGP  H I A AV+ K+A +  FKAY+KQ+ ANA  LG  L  +G  +V+GGT+NHL+L D+ PL LTG   EK  D   IT NKN + F   S     G+RIGT A+T+RG  E++ ++I       ++LTL+
Sbjct:  204 LVATGEHENPVPHADFVTTTTHKTLRGPRGGMILCKE---------------EFAKKVDKAIFPGIQGGPLMHVIAAKAVSFKEALSDDFKAYSKQIVANAKLLGEALNKEGIRIVSGGTDNHLLLLDVTPLQLTGKVAEKALDDIGITTNKNTIPFDQESPFVTSGIRIGTAAVTTRGFGEEEMKEIASI----ISLTLK 385          

HSP 2 Score: 22.7126 bits (47), Expect = 1.551e-37
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A L+ DMAHI+
Sbjct:  186 IADAVDAYLMVDMAHIA 202          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_SILPO (Serine hydroxymethyltransferase OS=Silicibacter pomeroyi GN=glyA1 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.670e-37
Identity = 88/196 (44.90%), Postives = 110/196 (56.12%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 640
            LVAA E  +PF + H+ TTTTHK+LRGPR GMI                   D   K+N A+FP +QGGP  H I A AVA  +A  P FK Y +QV ANA AL + L   G   VT GT+ H+VL DLRP G+ GN  EK     +IT NKN V F         G+R+G+PA T+RG  E +F QI +++   V
Sbjct:  215 LVAAGEHPSPFPHAHVATTTTHKTLRGPRGGMILTNDE--------------DIAKKVNSAIFPGIQGGPLMHVIAAKAVAFGEALRPEFKTYIQQVIANAQALSDQLIKGGLDTVTHGTDTHVVLVDLRPKGVKGNATEKALGRAHITCNKNGVPFDPEKPTVTSGIRLGSPAGTTRGFAETEFRQIADWIIEVV 396          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_PETMO (Serine hydroxymethyltransferase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.670e-37
Identity = 87/201 (43.28%), Postives = 115/201 (57.21%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLE 655
            LVAA    NP EY H+VT+TTHK+LRGPR G+I                   D    IN  +FP +QGGP  H I A AVA K+A +  FK Y KQV  N+ AL N L  K   +V+GGT+ HL L DL  L +TG  +EK    C+ITVNKN V  ++ S     G+RIGTPA+T+RG+ E++ ++I   + +     L+
Sbjct:  205 LVAAGIHPNPVEYAHVVTSTTHKTLRGPRGGIILTNDS--------------DIYKSINKIIFPGIQGGPLEHIIAAKAVAFKEAMSGEFKEYQKQVVRNSKALSNELASKNLRIVSGGTDTHLFLVDLSELNITGKALEKALGQCDITVNKNTVPKETLSPFVTSGIRIGTPAVTTRGMKEEEMKEIASMIAKVANNVLD 391          
The following BLAST results are available for this feature:
BLAST of CF834984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CHLP89.792e-3844.28Serine hydroxymethyltransferase OS=Chlorobaculum p... [more]
GLYA_MICAN1.190e-3744.27Serine hydroxymethyltransferase OS=Microcystis aer... [more]
GLYA_GEOBB1.191e-3746.35Serine hydroxymethyltransferase OS=Geobacter bemid... [more]
GLYA_RICPU1.279e-3744.79Serine hydroxymethyltransferase OS=Rickettsia peac... [more]
GLYA2_SULDN1.279e-3746.81Serine hydroxymethyltransferase 2 OS=Sulfurimonas ... [more]
GLYA1_RHIME1.550e-3744.79Serine hydroxymethyltransferase 1 OS=Rhizobium mel... [more]
GLYA_GEOSM1.551e-3745.83Serine hydroxymethyltransferase OS=Geobacter sp. (... [more]
GLYA_OCEIH1.551e-3743.78Serine hydroxymethyltransferase OS=Oceanobacillus ... [more]
GLYA_SILPO1.670e-3744.90Serine hydroxymethyltransferase OS=Silicibacter po... [more]
GLYA_PETMO1.670e-3743.28Serine hydroxymethyltransferase OS=Petrotoga mobil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834984 ID=CF834984; Name=CF834984; organism=Citrus sinensis; type=EST; length=675bp
GTTGCTGATCCCTTAAGGGCCCTTTTGCTCTGTGATATGGCTCATATCAG
TCGCTCTTGTTGCTGCTCAGGAAGCTGCAAACCCCTTTGAGTACTGTCAC
ATAGTCACAACCACTACTCACAAGAGCTTGCGGGGTCCTAGGGCTGGTAT
GATCTTCTACCGGAAGGGTCCTAAACCACCCAAGAAGGGCCAACCAGAGG
GTGCGGTTTATGACTTTGAAGACAAGATCAACTTTGCTGTCTTCCCATCC
CTTCAAGGTGGTCCTCACAACCACCAGATTGGTGCTCTAGCTGTTGCCCT
GAAACAGGCCTCGACCCCTGCATTCAAGGCCTATGCGAAACAAGTCAAGG
CCAATGCAGTTGCACTTGGGAACTACCTGACGGGCAAGGGATACAGCCTT
GTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGGGATCTACGCCCTCT
TGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGACCTTTGCAACATTA
CTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTGCCTTGGCCCCTGGA
GGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGAGGTTTGTTGGAGAA
GGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGCTGTGACCCTCACGT
TGGAAATTCAAAAGGAGTATGGAAA
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