CF834984

Overview
NameCF834984
Unique NameCF834984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5829 contig Csv1_Contig5829:711..1384. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_DESRM (Serine hydroxymethyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.670e-37
Identity = 88/198 (44.44%), Postives = 118/198 (59.60%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 646
            LVAA    +P  Y  +VTTTTHK+LRGPR GMI  +                ++   I+ A+FP  QGGP  H I A A A  +A  P FKAY +Q+  NA AL   L  +G++LV+GGT+NHL+L DLR  G+TG + E L D  +IT NKNA+ F         G+R+GTPA+T+RG  EKD +++ E +  A+TL
Sbjct:  206 LVAAGLHQSPVPYADVVTTTTHKTLRGPRGGMILCKE---------------EYAQLIDKAIFPGSQGGPLMHVIAAKAAAFGEALKPEFKAYQQQIINNAQALAKGLLERGFNLVSGGTDNHLILVDLRGTGITGKQAETLLDEVHITCNKNAIPFDPEKPFVTSGIRLGTPAVTTRGFKEKDMDKVAEII--ALTL 386          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_CAUCR (Serine hydroxymethyltransferase OS=Caulobacter crescentus GN=glyA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.670e-37
Identity = 87/196 (44.39%), Postives = 113/196 (57.65%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 640
            L+A    ANP  + HIVTTTTHK+LRGPR G++                       K+N AVFP LQGGP  H I A AVA  +A  P+FK YA+QV ANA AL   L   G ++V+GGT++HL+L DLRP G+TG   E   +   +T NKN V F  +      G+R+GTPA T+RG  E +F ++GE +   V
Sbjct:  215 LIAGGAYANPIPHAHIVTTTTHKTLRGPRGGLVLTNDEAIIK--------------KVNSAVFPGLQGGPLEHVIAAKAVAFGEALQPSFKDYARQVVANARALAEALLKSGVNIVSGGTDSHLMLVDLRPKGVTGRDAEHSLERAYMTCNKNGVPFDTAPFTITSGIRLGTPAGTTRGFKEAEFTRVGELIGEVV 396          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_PARD8 (Serine hydroxymethyltransferase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=glyA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.020e-37
Identity = 88/195 (45.13%), Postives = 113/195 (57.95%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFY-RXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPL--GLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            L+AA    NP EY HIVT+TTHK+LRGPR G+I   +           +G +      ++ AVFP +QGGP  H I A AVA  +A  P +K Y  QVKANA A+    T KGY +++GGT+NH +L DLR     LTG   EK     +ITVNKN V F   SA    G+R+GTPA+T+RG  E    +I E +
Sbjct:  200 LIAAGLLNNPLEYAHIVTSTTHKTLRGPRGGIILLGKDFENPWGKKTPKGEIKKMSQLLDSAVFPGIQGGPLEHVIAAKAVAFGEALEPEYKTYQAQVKANAAAMAKAFTDKGYKIISGGTDNHSMLIDLRTKFPDLTGKVAEKALVAADITVNKNMVPFDSRSAFQTSGIRVGTPAITTRGAKEPLMGEIVELI 394          

HSP 2 Score: 22.7126 bits (47), Expect = 2.020e-37
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 1
Query:    1 VADPLRALLLCDMAH 45
            +AD + ALL+ DMAH
Sbjct:  182 IADKVGALLMIDMAH 196          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_SYNR3 (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain RCC307) GN=glyA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.020e-37
Identity = 84/192 (43.75%), Postives = 113/192 (58.85%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            LVAA    +P  +CH+VTTTTHK+LRGPR G+I                   DF  + + AVFP  QGGP  H + A AVA  +A  P+FK Y++QV ANA AL   L  +G ++V+GGT+NH+VL DLR +G+TG   + L    NIT NKN V F   S     G+R+GT A+T+RG  E  F ++ + +
Sbjct:  207 LVAAGVHPSPVPHCHVVTTTTHKTLRGPRGGLILCNDA--------------DFAKQFDKAVFPGTQGGPLEHVVAAKAVAFGEALQPSFKQYSQQVVANAQALAERLQERGIAVVSGGTDNHVVLLDLRGIGMTGKVADLLVSEVNITANKNTVPFDPESPFVTSGLRLGTAALTTRGFDEAAFSEVADVI 384          

HSP 2 Score: 23.8682 bits (50), Expect = 2.020e-37
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A LL DMAHI+
Sbjct:  189 IADEVGAYLLADMAHIA 205          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_THEP1 (Serine hydroxymethyltransferase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.181e-37
Identity = 83/192 (43.23%), Postives = 109/192 (56.77%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            LVAA    NP EY H+VT+TTHK+LRGPR G+I                   D    ++  +FP +QGGP  H I A AV  K+A T  FK Y KQV  NA  +      +GY +V+GGT+ HL L DL P  +TG   EK  + C ITVNKN +  +  S     G+RIGTPA+T+RG+ E++ E+I E +
Sbjct:  205 LVAAGIHPNPLEYAHVVTSTTHKTLRGPRGGLILTNDP--------------DIAKAVDKTIFPGIQGGPLMHVIAAKAVCFKEAMTEEFKEYQKQVVKNAKKMAEEFQKRGYRIVSGGTDTHLFLVDLTPKDITGKAAEKALESCGITVNKNTIPNEKRSPFVASGIRIGTPAVTTRGMKEEEMEEIAEMI 382          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_RICRS (Serine hydroxymethyltransferase OS=Rickettsia rickettsii (strain Sheila Smith) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.181e-37
Identity = 86/192 (44.79%), Postives = 112/192 (58.33%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            LVA  E  +P  Y H VT+TTHK+LRGPR G+I                   +   KIN A+FP LQGGP  H I A AVA  +   P +K+Y +QV +NA AL + L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  EKDF  +G  +
Sbjct:  208 LVATGEHQSPIPYAHAVTSTTHKTLRGPRGGLILSNDE--------------EIGHKINSALFPGLQGGPLMHIIAAKAVAFLENLQPEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGHMV 385          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_RICRO (Serine hydroxymethyltransferase OS=Rickettsia rickettsii (strain Iowa) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.181e-37
Identity = 86/192 (44.79%), Postives = 112/192 (58.33%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            LVA  E  +P  Y H VT+TTHK+LRGPR G+I                   +   KIN A+FP LQGGP  H I A AVA  +   P +K+Y +QV +NA AL + L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  EKDF  +G  +
Sbjct:  208 LVATGEHQSPIPYAHAVTSTTHKTLRGPRGGLILSNDE--------------EIGHKINSALFPGLQGGPLMHIIAAKAVAFLENLQPEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGHMV 385          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_NITWN (Serine hydroxymethyltransferase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.181e-37
Identity = 93/207 (44.93%), Postives = 113/207 (54.59%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG 673
            LVA    A+P  + H+ TTTTHKSLRGPR G+I                       K N A+FP LQGGP  H I A AVAL +A  P FK YAK V  NA AL   L G G+ +V+GGT+NHL+L DLRP GL GN  EK      +T NKN + F         G+R+GTPA T+RG    +F+Q+G  +  A  LT   Q E G
Sbjct:  219 LVAGGVHASPVPHAHVTTTTTHKSLRGPRGGLILCNDEA--------------LAKKFNSAIFPGLQGGPLMHVIAAKAVALGEALRPDFKIYAKNVVENARALAESLRGHGFDIVSGGTDNHLMLVDLRPKGLKGNVSEKALVRAGLTCNKNGIPFDPEKPFVTSGLRLGTPATTTRGFGVSEFKQVGGLI--AEVLTAIAQAEDG 409          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA2_BURPS (Serine hydroxymethyltransferase 2 OS=Burkholderia pseudomallei GN=glyA2 PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.181e-37
Identity = 86/192 (44.79%), Postives = 110/192 (57.29%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            ++AA   ANP E+ H+VT+TTHK+LRGPR G +                   +   KIN AVFP LQGGP  H I   AVA  +A T  FK Y  +V ANA ALG+ L   G  LVTGGT+NHL+L DLRP GL G +VE+  +   IT NKN + F         G+R+GTPA T+RG    +F ++G  +
Sbjct:  212 VIAAGRHANPVEHAHVVTSTTHKTLRGPRGGFVLTNDE--------------EIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGGVDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLI 389          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA2_BURP1 (Serine hydroxymethyltransferase 2 OS=Burkholderia pseudomallei (strain 1710b) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.181e-37
Identity = 86/192 (44.79%), Postives = 110/192 (57.29%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            ++AA   ANP E+ H+VT+TTHK+LRGPR G +                   +   KIN AVFP LQGGP  H I   AVA  +A T  FK Y  +V ANA ALG+ L   G  LVTGGT+NHL+L DLRP GL G +VE+  +   IT NKN + F         G+R+GTPA T+RG    +F ++G  +
Sbjct:  212 VIAAGRHANPVEHAHVVTSTTHKTLRGPRGGFVLTNDE--------------EIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGGVDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLI 389          
The following BLAST results are available for this feature:
BLAST of CF834984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_DESRM1.670e-3744.44Serine hydroxymethyltransferase OS=Desulfotomaculu... [more]
GLYA_CAUCR1.670e-3744.39Serine hydroxymethyltransferase OS=Caulobacter cre... [more]
GLYA_PARD82.020e-3745.13Serine hydroxymethyltransferase OS=Parabacteroides... [more]
GLYA_SYNR32.020e-3743.75Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_THEP12.181e-3743.23Serine hydroxymethyltransferase OS=Thermotoga petr... [more]
GLYA_RICRS2.181e-3744.79Serine hydroxymethyltransferase OS=Rickettsia rick... [more]
GLYA_RICRO2.181e-3744.79Serine hydroxymethyltransferase OS=Rickettsia rick... [more]
GLYA_NITWN2.181e-3744.93Serine hydroxymethyltransferase OS=Nitrobacter win... [more]
GLYA2_BURPS2.181e-3744.79Serine hydroxymethyltransferase 2 OS=Burkholderia ... [more]
GLYA2_BURP12.181e-3744.79Serine hydroxymethyltransferase 2 OS=Burkholderia ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834984 ID=CF834984; Name=CF834984; organism=Citrus sinensis; type=EST; length=675bp
GTTGCTGATCCCTTAAGGGCCCTTTTGCTCTGTGATATGGCTCATATCAG
TCGCTCTTGTTGCTGCTCAGGAAGCTGCAAACCCCTTTGAGTACTGTCAC
ATAGTCACAACCACTACTCACAAGAGCTTGCGGGGTCCTAGGGCTGGTAT
GATCTTCTACCGGAAGGGTCCTAAACCACCCAAGAAGGGCCAACCAGAGG
GTGCGGTTTATGACTTTGAAGACAAGATCAACTTTGCTGTCTTCCCATCC
CTTCAAGGTGGTCCTCACAACCACCAGATTGGTGCTCTAGCTGTTGCCCT
GAAACAGGCCTCGACCCCTGCATTCAAGGCCTATGCGAAACAAGTCAAGG
CCAATGCAGTTGCACTTGGGAACTACCTGACGGGCAAGGGATACAGCCTT
GTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGGGATCTACGCCCTCT
TGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGACCTTTGCAACATTA
CTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTGCCTTGGCCCCTGGA
GGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGAGGTTTGTTGGAGAA
GGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGCTGTGACCCTCACGT
TGGAAATTCAAAAGGAGTATGGAAA
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