CF834984

Overview
NameCF834984
Unique NameCF834984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5829 contig Csv1_Contig5829:711..1384. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_ORITI (Serine hydroxymethyltransferase OS=Orientia tsutsugamushi (strain Ikeda) GN=glyA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.632e-37
Identity = 81/192 (42.19%), Postives = 110/192 (57.29%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            LVA +  ++P  Y H+VT+TTHK+LRGPR G+I                       KIN AVFP +QGGP  H I A A+A  +A  P +K Y  QV  NA  L   L  +GY+++TGGT+NH++L DLR   +TG + E L D   IT NK  + F  +S     G+R+GTPA T+RG  E DF  +G+++
Sbjct:  198 LVATEYHSSPIPYAHVVTSTTHKTLRGPRGGLILTNDE--------------SISKKINSAVFPGMQGGPLMHVIAAKAIAFSEALMPQYKEYINQVMLNAKVLAKLLQDRGYNILTGGTDNHMLLVDLRGKNITGQEAEYLLDAAGITCNKQVMPFDTTSPTITSGIRLGTPACTTRGFKENDFITVGKYI 375          

HSP 2 Score: 22.3274 bits (46), Expect = 2.632e-37
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A LL D+AHI+
Sbjct:  180 IADKVGAYLLADIAHIA 196          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_DESPS (Serine hydroxymethyltransferase OS=Desulfotalea psychrophila GN=glyA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.632e-37
Identity = 86/196 (43.88%), Postives = 113/196 (57.65%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 640
            LVA     +PF Y  +VTTTTHKSLRGPR  MI  +                ++   I+ AVFP +QGGPH+    A+AVALK+AST +FK Y  QV  NA +L + L  KG++LVTGGTENHL+L DL    +TG +  K  D   I +N N+V F       P G+R+GT A+TSRG  + +   +G  + R V
Sbjct:  212 LVAGGVHPSPFPYADVVTTTTHKSLRGPRGAMIMCKA---------------EYAKAIDKAVFPGMQGGPHDSTTAAIAVALKEASTDSFKKYTAQVVENAASLADVLIEKGFNLVTGGTENHLMLIDLSNKNITGKQAAKALDAAGIVLNCNSVPFDKRKPFDPSGIRLGTCAITSRGFAKAEMVILGNMMDRVV 392          

HSP 2 Score: 23.0978 bits (48), Expect = 2.632e-37
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + ALL+ DMAH +
Sbjct:  194 IADEVGALLMVDMAHFA 210          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_DESAP (Serine hydroxymethyltransferase OS=Desulforudis audaxviator (strain MP104C) GN=glyA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.633e-37
Identity = 91/205 (44.39%), Postives = 116/205 (56.59%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE 667
            L+AA    +P  Y  +VTTTTHK+LRGPR GMI                   ++   I+ AVFP +QGGP  H I A AVAL +A  P FK Y +Q+  NA AL   L  +G+ LV GGT+ HL+L DLR  GLTG   E L D  ++TVNKN V F         G+RIGTPA+T+RG+ E    QI E     ++LTL+  +E
Sbjct:  207 LIAAGLHMSPVPYADVVTTTTHKTLRGPRGGMIL---------------CPEEYAAAIDKAVFPGIQGGPLMHVIAAKAVALGEAQRPEFKTYQEQIVKNARALAQALQERGFELVAGGTDTHLILVDLRNKGLTGAVAEDLLDRVDVTVNKNMVPFDPQPPRVTSGIRIGTPAVTTRGMKEDSMVQIAE----VISLTLDHPEE 392          

HSP 2 Score: 24.6386 bits (52), Expect = 2.633e-37
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + ALL+ DMAHI+
Sbjct:  189 IADDVGALLMIDMAHIA 205          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_RICM5 (Serine hydroxymethyltransferase OS=Rickettsia massiliae (strain Mtu5) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.849e-37
Identity = 86/189 (45.50%), Postives = 111/189 (58.73%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 619
            LVA  E  +P  Y H VT+TTHK+LRGPR G+I                   +   KIN A+FP LQGGP  H I A AVA  +   P +K+Y +QV +NA AL + L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  EKDF  +G
Sbjct:  208 LVATGEHQSPIPYAHAVTSTTHKTLRGPRGGLILSNDE--------------EIGQKINSALFPGLQGGPLMHIIAAKAVAFLENLQPEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKFAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVG 382          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_RICCK (Serine hydroxymethyltransferase OS=Rickettsia canadensis (strain McKiel) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.849e-37
Identity = 85/192 (44.27%), Postives = 111/192 (57.81%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            LVA  E  +P  + HIVT+TTHK+LRGPR G+I                   +   KIN A+FP LQGGP  H I A AVA ++A  P +K+Y +QV +NA AL   L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKN + F  +S     G+R+GTPA T+RG  EKDF  +   +
Sbjct:  208 LVATGEHQSPLAFAHIVTSTTHKTLRGPRGGLILSNDE--------------EIGKKINSALFPGLQGGPLMHVIAAKAVAFQEALQPKYKSYIQQVISNAEALARILQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNTIPFDKTSPFITSGIRLGTPACTTRGFKEKDFVLVAHMI 385          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA2_BURMA (Serine hydroxymethyltransferase 2 OS=Burkholderia mallei GN=glyA2 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.849e-37
Identity = 86/192 (44.79%), Postives = 109/192 (56.77%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            ++AA   ANP E+ H+VT+TTHK+LRGPR G +                   +   KIN AVFP LQGGP  H I   AVA  +A T  FK Y   V ANA ALG+ L   G  LVTGGT+NHL+L DLRP GL G +VE+  +   IT NKN + F         G+R+GTPA T+RG    +F ++G  +
Sbjct:  212 VIAAGRHANPVEHAHVVTSTTHKTLRGPRGGFVLTNDE--------------EIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDHVLANAQALGDVLKAGGVDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLI 389          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA1_AGRT5 (Serine hydroxymethyltransferase 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=glyA1 PE=3 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 3.428e-37
Identity = 88/192 (45.83%), Postives = 105/192 (54.69%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            LVA  +  +PF +CH+ TTTTHKSLRGPR GMI                   D   K N AVFP LQGGP  H I A AVA  +A  P FK YA QV  NA AL   L   G  +V+GGT+NHL+L DLR    TG + E       IT NKN + F         GVR+GTPA T+RG  E +F +IG+ +
Sbjct:  212 LVAGGQHPSPFPHCHVATTTTHKSLRGPRGGMILTNDE--------------DLAKKFNSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKDYAAQVVKNAKALAETLIEGGLDVVSGGTDNHLMLVDLRKKNATGKRAEAALGRAYITCNKNGIPFDPEKPFVTSGVRLGTPAGTTRGFKEAEFREIGKLI 389          

HSP 2 Score: 22.7126 bits (47), Expect = 3.428e-37
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A L+ DMAHI+
Sbjct:  194 IADEVGAYLMVDMAHIA 210          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA2_RALEJ (Serine hydroxymethyltransferase 2 OS=Ralstonia eutropha (strain JMP134) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.429e-37
Identity = 85/192 (44.27%), Postives = 108/192 (56.25%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            ++AA   +NP +Y H+VT+TTHK+LRGPR G +                   +   KIN AVFP LQGGP  H I A AVA  +A T  F+ Y   V ANA ALG  L   G  LVTGGT+NHL+L DLRP GL G +VE+  +   IT NKN + F         G+R+G PA T+RG    +F +IG  +
Sbjct:  212 VIAAGRHSNPVDYAHVVTSTTHKTLRGPRGGFVLTNHE--------------EIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEAMTSDFRTYIDNVLANAKALGEVLKEGGVDLVTGGTDNHLLLVDLRPKGLKGTQVEQALERAGITCNKNGIPFDTEKPTITSGIRLGAPAATTRGFGVAEFREIGRLI 389          

HSP 2 Score: 22.3274 bits (46), Expect = 3.429e-37
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A L+ DMAHI+
Sbjct:  194 IADSVGAKLMVDMAHIA 210          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_RICBR (Serine hydroxymethyltransferase OS=Rickettsia bellii (strain RML369-C) GN=glyA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.429e-37
Identity = 87/192 (45.31%), Postives = 112/192 (58.33%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            LVAA E  +P  + HIVT+TT+K+LRGPR G+I                   +   KIN A+FP LQGGP  H I A AVA  ++  P +K+Y KQV  NA AL   L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F  +S     G+R+GTPA T+RG  EKDF  +G  +
Sbjct:  208 LVAAGEHQSPIPHAHIVTSTTNKTLRGPRGGLILSNDE--------------EIGKKINSALFPGLQGGPLMHIIAAKAVAFLESLQPEYKSYIKQVIINAKALAGSLQERGYDILTGGTDNHIVLVDLRKDGITGKIAANSLDRAGITCNKNAIPFDKTSPFITSGIRLGTPACTTRGFKEKDFVLVGHLI 385          

HSP 2 Score: 21.557 bits (44), Expect = 3.429e-37
Identity = 8/17 (47.06%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A L+ D+AHI+
Sbjct:  190 IADKVGAYLMADIAHIA 206          
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYA_RICB8 (Serine hydroxymethyltransferase OS=Rickettsia bellii (strain OSU 85-389) GN=glyA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.429e-37
Identity = 87/192 (45.31%), Postives = 112/192 (58.33%), Query Frame = 2
Query:   56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 628
            LVAA E  +P  + HIVT+TT+K+LRGPR G+I                   +   KIN A+FP LQGGP  H I A AVA  ++  P +K+Y KQV  NA AL   L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F  +S     G+R+GTPA T+RG  EKDF  +G  +
Sbjct:  208 LVAAGEHQSPIPHAHIVTSTTNKTLRGPRGGLILSNDE--------------EIGKKINSALFPGLQGGPLMHIIAAKAVAFLESLQPEYKSYIKQVIINAKALAGSLQERGYDILTGGTDNHIVLVDLRKDGITGKIAANSLDRAGITCNKNAIPFDKTSPFITSGIRLGTPACTTRGFKEKDFVLVGHLI 385          

HSP 2 Score: 21.557 bits (44), Expect = 3.429e-37
Identity = 8/17 (47.06%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    1 VADPLRALLLCDMAHIS 51
            +AD + A L+ D+AHI+
Sbjct:  190 IADKVGAYLMADIAHIA 206          
The following BLAST results are available for this feature:
BLAST of CF834984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_ORITI2.632e-3742.19Serine hydroxymethyltransferase OS=Orientia tsutsu... [more]
GLYA_DESPS2.632e-3743.88Serine hydroxymethyltransferase OS=Desulfotalea ps... [more]
GLYA_DESAP2.633e-3744.39Serine hydroxymethyltransferase OS=Desulforudis au... [more]
GLYA_RICM52.849e-3745.50Serine hydroxymethyltransferase OS=Rickettsia mass... [more]
GLYA_RICCK2.849e-3744.27Serine hydroxymethyltransferase OS=Rickettsia cana... [more]
GLYA2_BURMA2.849e-3744.79Serine hydroxymethyltransferase 2 OS=Burkholderia ... [more]
GLYA1_AGRT53.428e-3745.83Serine hydroxymethyltransferase 1 OS=Agrobacterium... [more]
GLYA2_RALEJ3.429e-3744.27Serine hydroxymethyltransferase 2 OS=Ralstonia eut... [more]
GLYA_RICBR3.429e-3745.31Serine hydroxymethyltransferase OS=Rickettsia bell... [more]
GLYA_RICB83.429e-3745.31Serine hydroxymethyltransferase OS=Rickettsia bell... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834984 ID=CF834984; Name=CF834984; organism=Citrus sinensis; type=EST; length=675bp
GTTGCTGATCCCTTAAGGGCCCTTTTGCTCTGTGATATGGCTCATATCAG
TCGCTCTTGTTGCTGCTCAGGAAGCTGCAAACCCCTTTGAGTACTGTCAC
ATAGTCACAACCACTACTCACAAGAGCTTGCGGGGTCCTAGGGCTGGTAT
GATCTTCTACCGGAAGGGTCCTAAACCACCCAAGAAGGGCCAACCAGAGG
GTGCGGTTTATGACTTTGAAGACAAGATCAACTTTGCTGTCTTCCCATCC
CTTCAAGGTGGTCCTCACAACCACCAGATTGGTGCTCTAGCTGTTGCCCT
GAAACAGGCCTCGACCCCTGCATTCAAGGCCTATGCGAAACAAGTCAAGG
CCAATGCAGTTGCACTTGGGAACTACCTGACGGGCAAGGGATACAGCCTT
GTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGGGATCTACGCCCTCT
TGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGACCTTTGCAACATTA
CTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTGCCTTGGCCCCTGGA
GGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGAGGTTTGTTGGAGAA
GGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGCTGTGACCCTCACGT
TGGAAATTCAAAAGGAGTATGGAAA
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