CF834993

Overview
NameCF834993
Unique NameCF834993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834993_ssr35 microsatellite CF834993_ssr35:35..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB06_ANTMA (Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.464e-19
Identity = 43/101 (42.57%), Postives = 64/101 (63.37%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 524
            W  EED +L +Y++++GP  W  +    NT L R +KSC  RW NYL+PGIK+G  T+ E+ ++IHLQA  GN+W  IA+ +P RT   +  +W    +K+
Sbjct:   17 WTPEEDIILVSYIQEHGPGNWRAIPS--NTGLLRCSKSCRLRWTNYLRPGIKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKK 115          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYBA2_ORYSJ (Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.561e-19
Identity = 40/109 (36.70%), Postives = 65/109 (59.63%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSI 548
            W  +ED  L   V+ +G + W F+++     LNR  KSC  RW NYL PG+K+G ++  E+ L++ L A+ GN+W +IA  +PGRT   +  +W     K+ +E+K ++
Sbjct:   13 WTEQEDLQLVCTVRLFGERRWDFIAKVSG--LNRTGKSCRLRWVNYLHPGLKRGRMSPHEERLILELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERKSNM 119          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MY113_ARATH (Transcription factor MYB113 OS=Arabidopsis thaliana GN=MYB113 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.263e-19
Identity = 48/105 (45.71%), Postives = 60/105 (57.14%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQ 536
            W TEED LLR  + +YG  +W  V  R  T LNR  KSC  RW NYLKP IK+G L  +E  LV+ L    GN+W  IA  +PGRTA  +  +W     K+  E+
Sbjct:   13 WTTEEDILLRQCIDKYGEGKWHRVPLR--TGLNRCRKSCRLRWLNYLKPSIKRGKLCSDEVDLVLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKKHDER 115          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: WER_ARATH (Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.760e-18
Identity = 48/136 (35.29%), Postives = 73/136 (53.68%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQ--REQKDSIRIVDPIDEHKYDQILETFAEKLVNN 623
            W  EED +L  YVK +G   W+ ++++  T L R  KSC  RW NYL P +K+G+ T++E+ L+I L    GN+W  IA  VPGRT  ++  +W     K+   ++QK      D + +       ET  E  ++N
Sbjct:   21 WTVEEDKILMDYVKAHGKGHWNRIAKK--TGLKRCGKSCRLRWMNYLSPNVKRGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLGIKDQKTKQSNGDIVYQINLPNPTETSEETKISN 154          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB75_ARATH (Transcription factor MYB75 OS=Arabidopsis thaliana GN=MYB75 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.605e-18
Identity = 45/101 (44.55%), Postives = 59/101 (58.42%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 524
            W TEED+LLR  + +YG  +W  V  R    LNR  KSC  RW NYLKP IK+G L+ +E  L++ L    GN+W  IA  +PGRTA  +  +W     K+
Sbjct:   13 WTTEEDSLLRQCINKYGEGKWHQVPVRAG--LNRCRKSCRLRWLNYLKPSIKRGKLSSDEVDLLLRLHRLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.708e-18
Identity = 43/122 (35.25%), Postives = 71/122 (58.20%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHKYDQ 587
            W  EED +L  ++  +G   W+ +++  +  L R  KSC  RW NYL+P +++G++T EEQ L++ L AK GN+W KIA  +PGRT   +  +W   + ++  +Q ++  I     EH  +Q
Sbjct:   18 WTMEEDLILINFISNHGEGVWNTIAR--SAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWNRTRIQKHIKQAEASFIGHINPEHSNEQ 137          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.708e-18
Identity = 43/110 (39.09%), Postives = 66/110 (60.00%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW--EVFKEKQQREQKDS 545
            W  EED +L  Y+  +G   W+ +++  +  L R  KSC  RW NYL+P +++G++T EEQ L++ L AK GN+W KIA  +PGRT   +  +W   + K  +Q +Q  S
Sbjct:   18 WTMEEDLILINYIANHGEGVWNSLAR--SAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKTLPGRTDNEIKNYWRTRIQKHMEQGDQSSS 125          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB90_ARATH (Transcription factor MYB90 OS=Arabidopsis thaliana GN=MYB90 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.789e-17
Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 524
            W  EED+LLR  + +YG  +W  V  R    LNR  KSC  RW NYLKP IK+G L+++E  L++ L    GN+W  IA  +PGRTA  +  +W     K+
Sbjct:   13 WTAEEDSLLRLCIDKYGEGKWHQVPLRAG--LNRCRKSCRLRWLNYLKPSIKRGRLSNDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB23_ARATH (Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.789e-17
Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 524
            W  EED +L  YV+ +G   W+ ++++  T L R  KSC  RW NYL P + +G+ TD+E+ L+I L    GN+W  IA  VPGRT  ++  +W     K+
Sbjct:   17 WTVEEDKILMDYVRTHGQGHWNRIAKK--TGLKRCGKSCRLRWMNYLSPNVNRGNFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 115          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.789e-17
Identity = 46/111 (41.44%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  213 RQRWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ--QREQK 539
            R  W  +ED  L AY++++G   W  + ++    L R  KSC  RW NYL+P +K+G+ TDEE+  +I L    GNKW KIAA +PGRT   +   W    +K+  QRE+K
Sbjct:   16 RGSWTPQEDMRLIAYIQKHGHTNWRALPKQAG--LLRCGKSCRLRWINYLRPDLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTHLKKKVAQREKK 124          
The following BLAST results are available for this feature:
BLAST of CF834993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
MYB06_ANTMA1.464e-1942.57Myb-related protein 306 OS=Antirrhinum majus GN=MY... [more]
MYBA2_ORYSJ5.561e-1936.70Myb-related protein MYBAS2 OS=Oryza sativa subsp. ... [more]
MY113_ARATH7.263e-1945.71Transcription factor MYB113 OS=Arabidopsis thalian... [more]
WER_ARATH2.760e-1835.29Transcription factor WER OS=Arabidopsis thaliana G... [more]
MYB75_ARATH3.605e-1844.55Transcription factor MYB75 OS=Arabidopsis thaliana... [more]
MYB40_ANTMA4.708e-1835.25Myb-related protein 340 OS=Antirrhinum majus GN=MY... [more]
MYB05_ANTMA4.708e-1839.09Myb-related protein 305 OS=Antirrhinum majus GN=MY... [more]
MYB90_ARATH1.789e-1743.56Transcription factor MYB90 OS=Arabidopsis thaliana... [more]
MYB23_ARATH1.789e-1739.60Transcription factor MYB23 OS=Arabidopsis thaliana... [more]
MYB1_MAIZE1.789e-1741.44Myb-related protein Zm1 OS=Zea mays PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834993 ID=CF834993; Name=CF834993; organism=Citrus sinensis; type=EST; length=647bp
CTTGTGCTCTCCTTTTAGTGCTCTCAGNAGNTTCGTTTGTTTGTTTGTTT
CCTCTTTCTTTCTCTCTTGCTTTCTGTTTCATTGAAGAAGCTAAGGTTGC
CGGATGTGCAAAGAAGAACAAGTTGGGTTTTTTAACACTTGAAGTTAAGA
AATATACAGTATGAGGAATTTTACACAATGGACAGCGTTGTTTACTCCTG
GAAATGAAGGAGAGACAGCGTTGGAGAACTGAAGAGGATGCTTTATTACG
TGCATATGTGAAACAATATGGCCCGAAGGAGTGGAGTTTTGTATCACAGC
GCATGAACACACCCCTAAACAGGGATGCAAAATCTTGCTTAGAAAGGTGG
AAGAACTACCTCAAACCAGGCATCAAGAAAGGATCCCTTACTGACGAGGA
GCAGCATCTTGTCATCCATCTCCAAGCAAAACACGGCAACAAGTGGAAGA
AAATTGCAGCTGAAGTTCCCGGTCGAACTGCTAAGAGACTGGGCAAGTGG
TGGGAAGTGTTCAAAGAGAAGCAGCAGAGAGAACAGAAGGATTCCATAAG
AATAGTTGATCCAATTGATGAGCACAAGTACGATCAGATTCTAGAGACTT
TTGCAGAGAAGCTAGTAAACAATCATTCATTTGTCATGGCCACTTCT
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