CF834993

Overview
NameCF834993
Unique NameCF834993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834993_ssr35 microsatellite CF834993_ssr35:35..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB21_ARATH (Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.337e-17
Identity = 43/134 (32.09%), Postives = 72/134 (53.73%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHKYDQILETFAEKLVNN 623
            W  EED +L  Y+  +G   W+ +++  +  L R  KSC  RW NYL+P +++G++T EEQ +++ L AK GN+W KIA  +PGRT   +  +W    +K  ++    +     +  H   +I +  A    +N
Sbjct:   25 WTMEEDLILINYIANHGDGVWNSLAK--SAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLIIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKYIKQ--SDVTTTSSVGSHHSSEINDQAASTSSHN 154          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: TT2_ARATH (Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.986e-17
Identity = 41/101 (40.59%), Postives = 58/101 (57.43%), Query Frame = 3
Query:  201 EMKERQRWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 503
            E   R  W   ED +LR Y+  +G  +WS +  +    L R  KSC  RWKNYL+PGIK+G+++ +E+ L+I L    GN+W  IA  +PGRT   +   W
Sbjct:   12 EELNRGAWTDHEDKILRDYITTHGEGKWSTLPNQAG--LKRCGKSCRLRWKNYLRPGIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHW 110          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.986e-17
Identity = 44/127 (34.65%), Postives = 67/127 (52.76%), Query Frame = 3
Query:  189 CLLLEMKERQRWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPID 569
            C  + MK R  W  EED +L +++K+ G   W  + +R    L R  KSC  RW NYL+P +K+G +T +E+ L++ L    GN+W  IA  +PGRT   +  +W     K+   Q    +   P+D
Sbjct:   18 CTKMGMK-RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAG--LLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLD 141          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYBC_MAIZE (Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.205e-17
Identity = 42/105 (40.00%), Postives = 61/105 (58.10%), Query Frame = 3
Query:  189 CLLLEMKERQRWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 503
            C   E  +R  W ++ED  L AYVK +G  +W  V Q+    L R  KSC  RW NYL+P I++G+++ +E+ L+I L    GN+W  IA  +PGRT   +  +W
Sbjct:    6 CCAKEGVKRGAWTSKEDDALAAYVKAHGEGKWREVPQKAG--LRRCGKSCRLRWLNYLRPNIRRGNISYDEEDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYW 108          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: GL1_ARALY (Trichome differentiation protein GL1 OS=Arabidopsis lyrata GN=GL1 PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.205e-17
Identity = 44/113 (38.94%), Postives = 62/113 (54.87%), Query Frame = 3
Query:  201 EMKERQR-----WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 524
            E KE Q      W  EED +L  YV  +G  +W+ + ++  T L R  KSC  RW NYL P + KG+ T++E+ L+I L    GN+W  IA  VPGRT  ++  +W     K+
Sbjct:    7 EEKENQEYKKGLWTVEEDNILMDYVLNHGTGQWNRIVRK--TGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 117          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MY114_ARATH (Transcription factor MYB114 OS=Arabidopsis thaliana GN=MYB114 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.798e-17
Identity = 43/101 (42.57%), Postives = 57/101 (56.44%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 524
            W  EED+LLR  + +YG  +W  V  R    LNR  KSC  RW NYLKP IK+G  + +E  L++ L    GN+W  IA  +PGRTA  +  +W     K+
Sbjct:   13 WTAEEDSLLRQCIGKYGEGKWHQVPLRAG--LNRCRKSCRLRWLNYLKPSIKRGKFSSDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB15_ANTMA (Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.879e-17
Identity = 42/105 (40.00%), Postives = 61/105 (58.10%), Query Frame = 3
Query:  210 ERQRWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 524
            +R  W  EED  L +YV + G + W  + +     L+R  KSC  RW NYL+P +KKG LT+ E++ +I L A  GN+W KIA  +PGRT   +  +W    +K+
Sbjct:   13 KRGPWTEEEDQKLTSYVLKNGIQGWRVIPKLAG--LSRCGKSCRLRWMNYLRPDLKKGPLTEMEENQIIELHAHLGNRWSKIALHIPGRTDNEIKNYWNTHIKKK 115          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: GL1_ARATH (Trichome differentiation protein GL1 OS=Arabidopsis thaliana GN=GL1 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 8.879e-17
Identity = 40/101 (39.60%), Postives = 58/101 (57.43%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 524
            W  EED +L  YV  +G  +W+ + ++  T L R  KSC  RW NYL P + KG+ T++E+ L+I L    GN+W  IA  VPGRT  ++  +W     K+
Sbjct:   19 WTVEEDNILMDYVLNHGTGQWNRIVRK--TGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 117          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYBP_MAIZE (Myb-related protein P OS=Zea mays GN=P PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.514e-16
Identity = 40/105 (38.10%), Postives = 61/105 (58.10%), Query Frame = 3
Query:  210 ERQRWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 524
            +R RW  EED LL  Y+ ++G   W  + +  N  L R  KSC  RW NYL+  +K+G+++ EE+ ++I L A  GN+W  IA+ +PGRT   +  +W     +Q
Sbjct:   13 KRGRWTAEEDQLLANYIAEHGEGSWRSLPK--NAGLLRCGKSCRLRWINYLRADVKRGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQ 115          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB98_ARATH (Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.978e-16
Identity = 40/107 (37.38%), Postives = 63/107 (58.88%), Query Frame = 3
Query:  219 RWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQK 539
            +W  EED +L   V++YG ++WS ++Q +     R  K C ERW N+L+P IKK + ++EE  ++I    + GNKW +IA  +PGRT   +   W   K +Q  ++K
Sbjct:  219 QWTAEEDRVLIQLVEKYGLRKWSHIAQVLP---GRIGKQCRERWHNHLRPDIKKETWSEEEDRVLIEFHKEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRK 322          
The following BLAST results are available for this feature:
BLAST of CF834993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
MYB21_ARATH2.337e-1732.09Transcription factor MYB21 OS=Arabidopsis thaliana... [more]
TT2_ARATH3.986e-1740.59Transcription factor TT2 OS=Arabidopsis thaliana G... [more]
MYB5_ARATH3.986e-1734.65Transcription repressor MYB5 OS=Arabidopsis thalia... [more]
MYBC_MAIZE5.205e-1740.00Anthocyanin regulatory C1 protein OS=Zea mays GN=C... [more]
GL1_ARALY5.205e-1738.94Trichome differentiation protein GL1 OS=Arabidopsi... [more]
MY114_ARATH6.798e-1742.57Transcription factor MYB114 OS=Arabidopsis thalian... [more]
MYB15_ANTMA8.879e-1740.00Myb-related protein 315 OS=Antirrhinum majus GN=MY... [more]
GL1_ARATH8.879e-1739.60Trichome differentiation protein GL1 OS=Arabidopsi... [more]
MYBP_MAIZE1.514e-1638.10Myb-related protein P OS=Zea mays GN=P PE=2 SV=1[more]
MYB98_ARATH1.978e-1637.38Transcription factor MYB98 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834993 ID=CF834993; Name=CF834993; organism=Citrus sinensis; type=EST; length=647bp
CTTGTGCTCTCCTTTTAGTGCTCTCAGNAGNTTCGTTTGTTTGTTTGTTT
CCTCTTTCTTTCTCTCTTGCTTTCTGTTTCATTGAAGAAGCTAAGGTTGC
CGGATGTGCAAAGAAGAACAAGTTGGGTTTTTTAACACTTGAAGTTAAGA
AATATACAGTATGAGGAATTTTACACAATGGACAGCGTTGTTTACTCCTG
GAAATGAAGGAGAGACAGCGTTGGAGAACTGAAGAGGATGCTTTATTACG
TGCATATGTGAAACAATATGGCCCGAAGGAGTGGAGTTTTGTATCACAGC
GCATGAACACACCCCTAAACAGGGATGCAAAATCTTGCTTAGAAAGGTGG
AAGAACTACCTCAAACCAGGCATCAAGAAAGGATCCCTTACTGACGAGGA
GCAGCATCTTGTCATCCATCTCCAAGCAAAACACGGCAACAAGTGGAAGA
AAATTGCAGCTGAAGTTCCCGGTCGAACTGCTAAGAGACTGGGCAAGTGG
TGGGAAGTGTTCAAAGAGAAGCAGCAGAGAGAACAGAAGGATTCCATAAG
AATAGTTGATCCAATTGATGAGCACAAGTACGATCAGATTCTAGAGACTT
TTGCAGAGAAGCTAGTAAACAATCATTCATTTGTCATGGCCACTTCT
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