CF834993

Overview
NameCF834993
Unique NameCF834993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834993_ssr35 microsatellite CF834993_ssr35:35..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB46_ARATH (Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.374e-16
Identity = 40/113 (35.40%), Postives = 66/113 (58.41%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVD 560
            W  EED+ L  Y+   G   WS V++  N  L R  KSC  RW NYL+P +K+G+ + +E+ L+I   +  GN+W +IAA +PGRT   +  +W    +K+ ++  D+  +++
Sbjct:   23 WSPEEDSKLMQYMLSNGQGCWSDVAK--NAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKKMSDTSNLIN 133          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB39_ARATH (Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.374e-16
Identity = 40/101 (39.60%), Postives = 55/101 (54.46%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 524
            W  EED  L AY+ + G   W  + +     LNR  KSC  RW NYL+P I++G  +D E+  ++ L A  GNKW KIA  +PGRT   +  +W     K+
Sbjct:   18 WLPEEDDKLTAYINENGYGNWRSLPKLAG--LNRCGKSCRLRWMNYLRPDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKK 116          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB12_ARATH (Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.374e-16
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 3
Query:  210 ERQRWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 503
            +R RW  EED +L  Y++  G   W  + +  N  L R  KSC  RW NYL+  +K+G++T EE+ LV+ L +  GN+W  IA  +PGRT   +  +W
Sbjct:   13 KRGRWTAEEDQILSNYIQSNGEGSWRSLPK--NAGLKRCGKSCRLRWINYLRSDLKRGNITPEEEELVVKLHSTLGNRWSLIAGHLPGRTDNEIKNYW 108          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB86_ARATH (Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.516e-16
Identity = 41/116 (35.34%), Postives = 63/116 (54.31%), Query Frame = 3
Query:  189 CLLLEMKERQRWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQ 536
            C   +   +  W  EED  L  Y+ ++G   WS V +     L R  KSC  RW NYL+P +K+G+ + +E+ L+I L A  GN+W +IA  +PGRT   +  +W    +K+ R +
Sbjct:    6 CCFKQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAG--LQRCGKSCRLRWINYLRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLRRK 119          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.516e-16
Identity = 39/94 (41.49%), Postives = 55/94 (58.51%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 503
            W  EED LL  Y++++G   W  + +     L R  KSC  RW NYL+P +K+G+ T+EE  L+I L +  GNKW  IA  +PGRT   +  +W
Sbjct:   17 WTKEEDQLLVDYIRKHGEGCWRSLPRAAG--LQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYW 108          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB2_PHYPA (Myb-related protein Pp2 OS=Physcomitrella patens GN=PP2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.817e-16
Identity = 42/124 (33.87%), Postives = 68/124 (54.84%), Query Frame = 3
Query:  213 RQRWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHKYD 584
            R  W +EED  L +++   G   W  + +     L R  KSC  RW NYL+P +K+G  ++ E++L++ L A  GN+W +IAA++PGRT   +  +W    +K+ R Q        P+++ K D
Sbjct:   14 RGPWTSEEDQKLVSHITNNGLSCWRAIPKLAG--LLRCGKSCRLRWTNYLRPDLKRGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLKKRLRSQGLDPNTHLPLEDSKLD 135          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYBA_XENLA (Myb-related protein A OS=Xenopus laevis GN=mybl1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.282e-15
Identity = 39/105 (37.14%), Postives = 58/105 (55.24%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW-EVFKEKQQRE 533
            W  EED  +   V +YGPK+WS +++ +     R  K C ERW N+L P +KK S T+EE  ++     + GN+W +IA  +PGRT   +   W    K K ++E
Sbjct:   89 WTKEEDQRVIELVHKYGPKKWSIIAKHLK---GRIGKQCRERWHNHLNPDVKKSSWTEEEDRIIYSAHKRMGNRWAEIAKLLPGRTDNSIKNHWNSTMKRKVEQE 190          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: LAF1_ARATH (Transcription factor LAF1 OS=Arabidopsis thaliana GN=LAF1 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.282e-15
Identity = 46/148 (31.08%), Postives = 75/148 (50.68%), Query Frame = 3
Query:  210 ERQR---WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ--QREQKDSIRIVDPIDEHKYDQIL--ETFAEKLVNNHSF 632
            ER R   W  EED  LR+++  YG   W+ V   +   L R+ KSC  RW NYL+PG+K+  ++ EE+  ++   +  GNKW +IA  +PGRT   +  +W    +K+  + +     + + P        +   +   E L++NH F
Sbjct:    8 ERHRKGLWSPEEDEKLRSFILSYGHSCWTTVP--IKAGLQRNGKSCRLRWINYLRPGLKRDMISAEEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWHSHLKKKWLKSQSLQDAKSISPPSSSSSSLVACGKRNPETLISNHVF 153          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYBA_DICDI (Myb-like protein A OS=Dictyostelium discoideum GN=mybA PE=4 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.674e-15
Identity = 42/118 (35.59%), Postives = 61/118 (51.69%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEH 575
            W  +ED  +   VK YGPK+WS ++  +     R  K C ERW N+L P IKK + +DEE  ++    A HGNKW +IA  +PGRT   +   W       +R   +++ +     EH
Sbjct:  204 WTKDEDDKVIELVKTYGPKKWSDIALHLK---GRMGKQCRERWHNHLNPNIKKEAWSDEEDQIIRDQHAIHGNKWAEIAKFLPGRTDNAIKNHW---NSSMKRVSNNNVHLKSHAIEH 315          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.187e-15
Identity = 39/101 (38.61%), Postives = 59/101 (58.42%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 524
            W  EED +L A+++++G   W  + ++    L R  KSC  RW NYL+P IK+G+ + EE+  +IHL    GN+W  IAA +PGRT   +   W    +K+
Sbjct:   17 WTPEEDKVLVAHIQRHGHGNWRALPKQAG--LLRCGKSCRLRWINYLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKR 115          
The following BLAST results are available for this feature:
BLAST of CF834993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
MYB46_ARATH3.374e-1635.40Transcription factor MYB46 OS=Arabidopsis thaliana... [more]
MYB39_ARATH3.374e-1639.60Transcription factor MYB39 OS=Arabidopsis thaliana... [more]
MYB12_ARATH3.374e-1639.80Transcription factor MYB12 OS=Arabidopsis thaliana... [more]
MYB86_ARATH7.516e-1635.34Transcription factor MYB86 OS=Arabidopsis thaliana... [more]
MYB3_ARATH7.516e-1641.49Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
MYB2_PHYPA9.817e-1633.87Myb-related protein Pp2 OS=Physcomitrella patens G... [more]
MYBA_XENLA1.282e-1537.14Myb-related protein A OS=Xenopus laevis GN=mybl1 P... [more]
LAF1_ARATH1.282e-1531.08Transcription factor LAF1 OS=Arabidopsis thaliana ... [more]
MYBA_DICDI1.674e-1535.59Myb-like protein A OS=Dictyostelium discoideum GN=... [more]
MYB4_ORYSJ2.187e-1538.61Myb-related protein Myb4 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834993 ID=CF834993; Name=CF834993; organism=Citrus sinensis; type=EST; length=647bp
CTTGTGCTCTCCTTTTAGTGCTCTCAGNAGNTTCGTTTGTTTGTTTGTTT
CCTCTTTCTTTCTCTCTTGCTTTCTGTTTCATTGAAGAAGCTAAGGTTGC
CGGATGTGCAAAGAAGAACAAGTTGGGTTTTTTAACACTTGAAGTTAAGA
AATATACAGTATGAGGAATTTTACACAATGGACAGCGTTGTTTACTCCTG
GAAATGAAGGAGAGACAGCGTTGGAGAACTGAAGAGGATGCTTTATTACG
TGCATATGTGAAACAATATGGCCCGAAGGAGTGGAGTTTTGTATCACAGC
GCATGAACACACCCCTAAACAGGGATGCAAAATCTTGCTTAGAAAGGTGG
AAGAACTACCTCAAACCAGGCATCAAGAAAGGATCCCTTACTGACGAGGA
GCAGCATCTTGTCATCCATCTCCAAGCAAAACACGGCAACAAGTGGAAGA
AAATTGCAGCTGAAGTTCCCGGTCGAACTGCTAAGAGACTGGGCAAGTGG
TGGGAAGTGTTCAAAGAGAAGCAGCAGAGAGAACAGAAGGATTCCATAAG
AATAGTTGATCCAATTGATGAGCACAAGTACGATCAGATTCTAGAGACTT
TTGCAGAGAAGCTAGTAAACAATCATTCATTTGTCATGGCCACTTCT
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