CF834993

Overview
NameCF834993
Unique NameCF834993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834993_ssr35 microsatellite CF834993_ssr35:35..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.851e-14
Identity = 37/94 (39.36%), Postives = 54/94 (57.45%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 503
            W  EED  L  Y++ +G   W  + +  +  L R  KSC  RW NYL+P +K+G+ TD+E  ++I L +  GNKW  IA  +PGRT   +  +W
Sbjct:   17 WTKEEDQRLVDYIRNHGEGCWRSLPK--SAGLLRCGKSCRLRWINYLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYW 108          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.124e-14
Identity = 48/143 (33.57%), Postives = 68/143 (47.55%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHKYDQILET-FAEKLVNNHSFVMATS 647
            W  EED  L  Y++ +G   W  + +     L R  KSC  RW NYL+P +K+G+ T+EE  ++I L +  GNKW  IA  +PGRT   +  +W         ++K   R +DP      +    T  A   VNN      TS
Sbjct:   17 WTKEEDQRLINYIRAHGEGCWRSLPKAAG--LLRCGKSCRLRWINYLRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNT-----HIKRKLVSRGIDPQTHRSLNSATTTATATPTVNNSCLDFRTS 152          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYBB_XENLA (Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.387e-14
Identity = 42/122 (34.43%), Postives = 61/122 (50.00%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW-EVFKEK-------------QQREQKDS 545
            W  EED  +   VK+YG K W+ +++++     R  K C ERW N+L P +KK S T+EE  ++       GN+W +IA  +PGRT   +   W    K K             QQ E++DS
Sbjct:   86 WTKEEDEKVIELVKKYGTKHWTLIAKQLR---GRMGKQCRERWHNHLNPEVKKSSWTEEEDRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVETGGFLTVKASGQQEEREDS 204          

HSP 2 Score: 72.7886 bits (177), Expect = 1.733e-12
Identity = 42/122 (34.43%), Postives = 61/122 (50.00%), Query Frame = 3
Query:  201 EMKERQRWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNK-WKKIAAEVPGRTAKRLGKWWE-----VFKEKQQREQKDSI 548
            E + + +W  EED  L+A VK++G  EW  ++  +N   NR  + C  RW   L P + KG  T EE   VI L  K+G K W  IA ++ GR  K+  + W        K+    E++D I
Sbjct:   27 ENRVKVKWTPEEDETLKALVKKHGQGEWKTIASNLN---NRTEQQCQHRWLRVLHPDLVKGPWTKEEDEKVIELVKKYGTKHWTLIAKQLRGRMGKQCRERWHNHLNPEVKKSSWTEEEDRI 145          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYBB_CHICK (Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.387e-14
Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 503
            W  EED  +   VK+YG K+W+ +++ +     R  K C ERW N+L P +KK S T+EE  ++       GN+W +IA  +PGRT   +   W
Sbjct:   86 WTKEEDQKVIELVKKYGTKQWTLIAKHLK---GRLGKQCRERWHNHLNPEVKKSSWTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHW 176          

HSP 2 Score: 67.0106 bits (162), Expect = 9.508e-11
Identity = 39/116 (33.62%), Postives = 54/116 (46.55%), Query Frame = 3
Query:  219 RWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNK-WKKIAAEVPGRTAKRLGKWWE-----VFKEKQQREQKDSI 548
            +W  EED  L+  V+ YG  +W F++       NR  + C  RW   L P + KG  T EE   VI L  K+G K W  IA  + GR  K+  + W        K+    E++D I
Sbjct:   33 KWTQEEDEQLKMLVRHYGQNDWKFLASHFP---NRSDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTEEEDRI 145          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB3_HORVU (Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 7.035e-14
Identity = 38/105 (36.19%), Postives = 60/105 (57.14%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQ 536
            W  EED  L  ++ ++G   WS V +     LNR  KSC  RW NYL+P +K+G  + +E+  ++ L    GN+W +IA+ +PGRT   +  +W    +K+ R+Q
Sbjct:   19 WSPEEDEKLYNHIIRHGVGCWSSVPRL--AALNRCGKSCRLRWINYLRPDLKRGCFSQQEEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKKLRQQ 121          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYBQ_DICDI (Myb-like protein Q OS=Dictyostelium discoideum GN=mybQ PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.047e-13
Identity = 37/94 (39.36%), Postives = 52/94 (55.32%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 503
            W+ EEDA L   V + GPKEWS ++ ++     R  K C ERW N+L P ++K + T EE  ++I   A  GNKW  I+  + GR A  +   W
Sbjct:  280 WKDEEDAKLVELVNKCGPKEWSSIAAKIP---GRIGKQCRERWFNHLSPEVRKTNWTPEEDKIIIDAHASLGNKWTAISKMLDGRPANAIKNHW 370          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYBB_MOUSE (Myb-related protein B OS=Mus musculus GN=Mybl2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.047e-13
Identity = 34/94 (36.17%), Postives = 51/94 (54.26%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 503
            W  EED  +   VK+YG K+W+ +++ +     R  K C ERW N+L P +KK   T+EE  ++       GN+W +IA  +PGRT   +   W
Sbjct:   86 WTKEEDQKVIELVKKYGTKQWTLIAKHLK---GRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHW 176          

HSP 2 Score: 71.2478 bits (173), Expect = 5.042e-12
Identity = 40/107 (37.38%), Postives = 56/107 (52.34%), Query Frame = 3
Query:  195 LLEMKERQ---RWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNK-WKKIAAEVPGRTAKRLGKWW 503
            LLE ++ +   +W  EED  LRA V+Q+G ++W F++       NR  + C  RW   L P + KG  T EE   VI L  K+G K W  IA  + GR  K+  + W
Sbjct:   22 LLEQRDNRCKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP---NRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERW 125          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYBB_HUMAN (Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.047e-13
Identity = 34/94 (36.17%), Postives = 51/94 (54.26%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 503
            W  EED  +   VK+YG K+W+ +++ +     R  K C ERW N+L P +KK   T+EE  ++       GN+W +IA  +PGRT   +   W
Sbjct:   86 WTKEEDQKVIELVKKYGTKQWTLIAKHLK---GRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHW 176          

HSP 2 Score: 70.4774 bits (171), Expect = 8.600e-12
Identity = 38/102 (37.25%), Postives = 53/102 (51.96%), Query Frame = 3
Query:  201 EMKERQRWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNK-WKKIAAEVPGRTAKRLGKWW 503
            + K + +W  EED  LRA V+Q+G ++W F++       NR  + C  RW   L P + KG  T EE   VI L  K+G K W  IA  + GR  K+  + W
Sbjct:   27 DSKCKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP---NRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERW 125          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: RAX2_ARATH (Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.956e-13
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 3
Query:  210 ERQRWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 524
            +R  W  EEDA L+ Y+++ G    ++++      L R  KSC  RW NYL+P I+ G  T+EE +++  L A  G++W  IAA + GRT   +  +W    +K+
Sbjct:   13 KRGPWSPEEDAKLKDYIEKQGTGG-NWIALPHKAGLRRCGKSCRLRWLNYLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKK 116          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYBM_DICDI (Myb-like protein M OS=Dictyostelium discoideum GN=mybM PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.123e-11
Identity = 44/140 (31.43%), Postives = 66/140 (47.14%), Query Frame = 3
Query:  165 GILHNGQRCLLLEMKERQRWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE----QKDSIRIVDPIDE 572
            G + NG R      +   +W  EED  L   V  YG K+W  +S  M     +    C + WK  L P I+KG   ++E+ L++ L  +HG+ WKKIA  +  RT  +    ++  K  Q RE     K+   +V  +DE
Sbjct:   57 GQIQNGIR------RSPNKWTEEEDQKLFQLVSIYGEKKWKRISAEMGG--QKTGAQCAQHWKRVLSPDIRKGPWDEDEEELLLRLVNQHGSSWKKIAKRICKRTDIQCR--YQYLKSLQSREVAWVPKEDEVLVKKVDE 186          
The following BLAST results are available for this feature:
BLAST of CF834993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
MYB6_ARATH1.851e-1439.36Transcription repressor MYB6 OS=Arabidopsis thalia... [more]
MYB30_ANTMA4.124e-1433.57Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
MYBB_XENLA5.387e-1434.43Myb-related protein B OS=Xenopus laevis GN=mybl2 P... [more]
MYBB_CHICK5.387e-1437.23Myb-related protein B OS=Gallus gallus GN=MYBL2 PE... [more]
MYB3_HORVU7.035e-1436.19Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB... [more]
MYBQ_DICDI2.047e-1339.36Myb-like protein Q OS=Dictyostelium discoideum GN=... [more]
MYBB_MOUSE2.047e-1336.17Myb-related protein B OS=Mus musculus GN=Mybl2 PE=... [more]
MYBB_HUMAN2.047e-1336.17Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=... [more]
RAX2_ARATH5.956e-1335.24Transcription factor RAX2 OS=Arabidopsis thaliana ... [more]
MYBM_DICDI1.123e-1131.43Myb-like protein M OS=Dictyostelium discoideum GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834993 ID=CF834993; Name=CF834993; organism=Citrus sinensis; type=EST; length=647bp
CTTGTGCTCTCCTTTTAGTGCTCTCAGNAGNTTCGTTTGTTTGTTTGTTT
CCTCTTTCTTTCTCTCTTGCTTTCTGTTTCATTGAAGAAGCTAAGGTTGC
CGGATGTGCAAAGAAGAACAAGTTGGGTTTTTTAACACTTGAAGTTAAGA
AATATACAGTATGAGGAATTTTACACAATGGACAGCGTTGTTTACTCCTG
GAAATGAAGGAGAGACAGCGTTGGAGAACTGAAGAGGATGCTTTATTACG
TGCATATGTGAAACAATATGGCCCGAAGGAGTGGAGTTTTGTATCACAGC
GCATGAACACACCCCTAAACAGGGATGCAAAATCTTGCTTAGAAAGGTGG
AAGAACTACCTCAAACCAGGCATCAAGAAAGGATCCCTTACTGACGAGGA
GCAGCATCTTGTCATCCATCTCCAAGCAAAACACGGCAACAAGTGGAAGA
AAATTGCAGCTGAAGTTCCCGGTCGAACTGCTAAGAGACTGGGCAAGTGG
TGGGAAGTGTTCAAAGAGAAGCAGCAGAGAGAACAGAAGGATTCCATAAG
AATAGTTGATCCAATTGATGAGCACAAGTACGATCAGATTCTAGAGACTT
TTGCAGAGAAGCTAGTAAACAATCATTCATTTGTCATGGCCACTTCT
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