CF834993

Overview
NameCF834993
Unique NameCF834993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834993_ssr35 microsatellite CF834993_ssr35:35..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.268e-11
Identity = 34/94 (36.17%), Postives = 47/94 (50.00%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 503
            W  EED  LR  V +YGP+ W+ +S+ +     R  KSC  RW N L P ++    + EE   +    A+ GNKW  IA  + GRT   +   W
Sbjct:    9 WSPEEDEQLRRLVVKYGPRNWTVISKSIP---GRSGKSCRLRWCNQLSPQVEHRPFSAEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHW 99          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: CDC5L_RAT (Cell division cycle 5-related protein OS=Rattus norvegicus GN=Cdc5l PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.574e-11
Identity = 36/114 (31.58%), Postives = 59/114 (51.75%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDP 563
            WR  ED +L+A V +YG  +WS ++  ++    + AK C  RW  +L P IKK   + EE+  ++HL      +W+ I A + GRTA +  + +E   +K  +   +     DP
Sbjct:   11 WRNTEDEILKAAVMKYGKNQWSRIASLLH---RKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTI-APIIGRTAAQCLEHYEFLLDKTAQRDNEEETTDDP 120          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: CDC5L_NEMVE (Cell division cycle 5-related protein OS=Nematostella vectensis GN=cdc5l PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.574e-11
Identity = 37/114 (32.46%), Postives = 60/114 (52.63%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDP 563
            WR  ED +L+A V +YG  +WS ++  ++    + AK C  RW  +L P IKK   + EE   ++HL      +W+ IA  + GRTA +  + +E   ++ Q ++ D     DP
Sbjct:   11 WRNTEDEILKAAVMKYGKNQWSRIASLLH---RKSAKQCKARWYEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPLI-GRTAAQCLERYEYLLDQAQAKEGDKDEGDDP 120          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: CDC5L_MOUSE (Cell division cycle 5-related protein OS=Mus musculus GN=Cdc5l PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.574e-11
Identity = 36/114 (31.58%), Postives = 59/114 (51.75%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDP 563
            WR  ED +L+A V +YG  +WS ++  ++    + AK C  RW  +L P IKK   + EE+  ++HL      +W+ I A + GRTA +  + +E   +K  +   +     DP
Sbjct:   11 WRNTEDEILKAAVMKYGKNQWSRIASLLH---RKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTI-APIIGRTAAQCLEHYEFLLDKTAQRDNEEETTDDP 120          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: CDC5L_HUMAN (Cell division cycle 5-like protein OS=Homo sapiens GN=CDC5L PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.574e-11
Identity = 36/114 (31.58%), Postives = 59/114 (51.75%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDP 563
            WR  ED +L+A V +YG  +WS ++  ++    + AK C  RW  +L P IKK   + EE+  ++HL      +W+ I A + GRTA +  + +E   +K  +   +     DP
Sbjct:   11 WRNTEDEILKAAVMKYGKNQWSRIASLLH---RKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTI-APIIGRTAAQCLEHYEFLLDKAAQRDNEEETTDDP 120          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: CDC5L_BOVIN (Cell division cycle 5-like protein OS=Bos taurus GN=CDC5L PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.574e-11
Identity = 36/114 (31.58%), Postives = 59/114 (51.75%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDP 563
            WR  ED +L+A V +YG  +WS ++  ++    + AK C  RW  +L P IKK   + EE+  ++HL      +W+ I A + GRTA +  + +E   +K  +   +     DP
Sbjct:   11 WRNTEDEILKAAVMKYGKNQWSRIASLLH---RKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTI-APIIGRTAAQCLEHYEFLLDKAAQRDNEEETTDDP 120          
The following BLAST results are available for this feature:
BLAST of CF834993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
MYB44_ARATH4.268e-1136.17Transcription factor MYB44 OS=Arabidopsis thaliana... [more]
CDC5L_RAT5.574e-1131.58Cell division cycle 5-related protein OS=Rattus no... [more]
CDC5L_NEMVE5.574e-1132.46Cell division cycle 5-related protein OS=Nematoste... [more]
CDC5L_MOUSE5.574e-1131.58Cell division cycle 5-related protein OS=Mus muscu... [more]
CDC5L_HUMAN5.574e-1131.58Cell division cycle 5-like protein OS=Homo sapiens... [more]
CDC5L_BOVIN5.574e-1131.58Cell division cycle 5-like protein OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834993 ID=CF834993; Name=CF834993; organism=Citrus sinensis; type=EST; length=647bp
CTTGTGCTCTCCTTTTAGTGCTCTCAGNAGNTTCGTTTGTTTGTTTGTTT
CCTCTTTCTTTCTCTCTTGCTTTCTGTTTCATTGAAGAAGCTAAGGTTGC
CGGATGTGCAAAGAAGAACAAGTTGGGTTTTTTAACACTTGAAGTTAAGA
AATATACAGTATGAGGAATTTTACACAATGGACAGCGTTGTTTACTCCTG
GAAATGAAGGAGAGACAGCGTTGGAGAACTGAAGAGGATGCTTTATTACG
TGCATATGTGAAACAATATGGCCCGAAGGAGTGGAGTTTTGTATCACAGC
GCATGAACACACCCCTAAACAGGGATGCAAAATCTTGCTTAGAAAGGTGG
AAGAACTACCTCAAACCAGGCATCAAGAAAGGATCCCTTACTGACGAGGA
GCAGCATCTTGTCATCCATCTCCAAGCAAAACACGGCAACAAGTGGAAGA
AAATTGCAGCTGAAGTTCCCGGTCGAACTGCTAAGAGACTGGGCAAGTGG
TGGGAAGTGTTCAAAGAGAAGCAGCAGAGAGAACAGAAGGATTCCATAAG
AATAGTTGATCCAATTGATGAGCACAAGTACGATCAGATTCTAGAGACTT
TTGCAGAGAAGCTAGTAAACAATCATTCATTTGTCATGGCCACTTCT
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