CF835049

Overview
NameCF835049
Unique NameCF835049
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig151 contig Csv1_Contig151:410..1094. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835049 vs. ExPASy Swiss-Prot
Match: UBA1_RAT (Ubiquitin-like modifier-activating enzyme 1 OS=Rattus norvegicus GN=Uba1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.087e-29
Identity = 68/182 (37.36%), Postives = 109/182 (59.89%), Query Frame = 1
Query:   10 NYGIPEVDKLKPKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWILR------DNPTLRQLLQWLQ-DKGLNAYSISYGSCLLFNSMFP--RHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQI 528
            NY I   D+ K K IAG+IIPAIAT+TA   GLVCLELYKV+ G  +L+ Y+N F NLALP F  +EP+     ++ +  WT+WDR+ ++      +  TL+Q L + + +  L    +S G  +L++   P  + KER+D+ + ++V  V+K +L  + +   + + C DE   D+++P +
Sbjct:  872 NYDISPADRHKSKLIAGKIIPAIATTTAAVVGLVCLELYKVVQGHQQLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGLQPNGEEMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERLDQPMTEIVSRVSKRKLGRHVRALVLELCCNDESGEDVEVPYV 1053          
BLAST of CF835049 vs. ExPASy Swiss-Prot
Match: UBA1_MOUSE (Ubiquitin-like modifier-activating enzyme 1 OS=Mus musculus GN=Uba1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.087e-29
Identity = 68/182 (37.36%), Postives = 109/182 (59.89%), Query Frame = 1
Query:   10 NYGIPEVDKLKPKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWILR------DNPTLRQLLQWLQ-DKGLNAYSISYGSCLLFNSMFP--RHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQI 528
            NY I   D+ K K IAG+IIPAIAT+TA   GLVCLELYKV+ G  +L+ Y+N F NLALP F  +EP+     ++ +  WT+WDR+ ++      +  TL+Q L + + +  L    +S G  +L++   P  + KER+D+ + ++V  V+K +L  + +   + + C DE   D+++P +
Sbjct:  872 NYDISPADRHKSKLIAGKIIPAIATTTAAVVGLVCLELYKVVQGHQQLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGLQPNGEEMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERLDQPMTEIVSRVSKRKLGRHVRALVLELCCNDESGEDVEVPYV 1053          
BLAST of CF835049 vs. ExPASy Swiss-Prot
Match: UBA1_DICDI (Ubiquitin-like modifier-activating enzyme 1 OS=Dictyostelium discoideum GN=uba1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.700e-24
Identity = 66/179 (36.87%), Postives = 103/179 (57.54%), Query Frame = 1
Query:   10 NYGIPEVDKLKPKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPV-PPKVFKHQDMSWTVWDRWILRDNPTLRQLLQWLQDK-GLNAYSISYGSCLLFNSMFPRHK---ERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVD-EDDNDIDIPQI 528
            NY I   DK K K IAG+IIPA+ T+TA+  G VC+EL KV+     LE Y++TF NL +P F   EP+  PK    +  +WT+WDR+ +  + TL++ L   + K GL+   +S    LL+ ++F   K   ER+  K+  L   ++K  LP  +++  + + C D E  +D+D+P +
Sbjct:  836 NYAISPADKHKTKGIAGKIIPALVTTTAVVAGFVCIELIKVIQ-NKALEKYKSTFMNLGIPFFGFVEPIAAPKNKIREGWTWTLWDRFDVDGDITLKEFLDLFEKKHGLDISMLSCKVTLLY-ALFTDKKTKEERLKMKISQLYETLSKKPLPKDKKYLLLEICCNDTETGDDVDVPSV 1012          
BLAST of CF835049 vs. ExPASy Swiss-Prot
Match: UBA6_HUMAN (Ubiquitin-like modifier-activating enzyme 6 OS=Homo sapiens GN=UBA6 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.421e-20
Identity = 62/183 (33.88%), Postives = 101/183 (55.19%), Query Frame = 1
Query:   13 YGIPEVDKLKPKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFK-HQDMSWTVWDRWIL--RDNPTLRQLLQWLQDK-GLNAYSISYGSCLLFNSMFPRHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDI--PQISIYFS 543
            Y I   D+ K K IAG+IIPAIAT+TA  +GLV LE+ KV  GG+  E Y+N F NLA+P+    E    +  K    +S+T+WDRW +  +++ TL   +  +++K G+    +  G  +L+  + P H +R+   +  LV+   +      +++ D+ V+   + D D D+  P +  YFS
Sbjct:  873 YSIEPADRFKTKRIAGKIIPAIATTTATVSGLVALEMIKV-TGGYPFEAYKNCFLNLAIPIVVFTETTEVRKTKIRNGISFTIWDRWTVHGKEDFTLLDFINAVKEKYGIEPTMVVQGVKMLYVPVMPGHAKRLKLTMHKLVKPTTE------KKYVDLTVSFAPDIDGDEDLPGPPVRYYFS 1048          
BLAST of CF835049 vs. ExPASy Swiss-Prot
Match: UBA6_MOUSE (Ubiquitin-like modifier-activating enzyme 6 OS=Mus musculus GN=Uba6 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 61/183 (33.33%), Postives = 99/183 (54.10%), Query Frame = 1
Query:   13 YGIPEVDKLKPKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVP-PKVFKHQDMSWTVWDRWIL--RDNPTLRQLLQWLQDK-GLNAYSISYGSCLLFNSMFPRHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDI--PQISIYFS 543
            Y I   D+ K K IAG+IIPAIATSTA  +GLV LE+ KV  GG+  + Y+N F NLA+P+    E     K      +S+T+WDRW +  +++ TL   +  +++  G+    +  G  +L+  + P H +R+   +  LV+   +      +++ D+ V+   + D D D+  P +  YFS
Sbjct:  873 YSIEPADRFKTKRIAGKIIPAIATSTAAVSGLVALEMIKVA-GGYPFDAYKNCFLNLAIPIIVFTETSEVRKTEIRNGISFTIWDRWTVHGKEDFTLSDFINAVKENYGIEPTMVVQGVKMLYVPVMPGHAKRLKLTMHKLVKPSTE------KKYVDLTVSFAPDADGDEDLPGPPVRYYFS 1048          
BLAST of CF835049 vs. ExPASy Swiss-Prot
Match: UBA7_HUMAN (Ubiquitin-like modifier-activating enzyme 7 OS=Homo sapiens GN=UBA7 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.217e-17
Identity = 60/180 (33.33%), Postives = 94/180 (52.22%), Query Frame = 1
Query:    7 RNYGIPEVDKLKPKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWIL---RDNPTLRQLLQWLQDK-GLNAYSISYGSCLLFNSMFPRHK--ERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQI 528
            +NYGIP V++ + K I G+IIPAIAT+TA   GL+ LELYKV+ G      +R+++ +LA        P  P +     + WT WDR  +   +   TL  LL  LQ++ GL    + +GS LL+ + +   K  + +  +V +LV+ +   + P   Q   V+    + DD D   P +
Sbjct:  830 QNYGIPPVNRAQSKRIVGQIIPAIATTTAAVAGLLGLELYKVVSGPRPRSAFRHSYLHLAENYLIRYMPFAPAIQTFHHLKWTSWDRLKVPAGQPERTLESLLAHLQEQHGLRVRILLHGSALLYAAGWSPEKQAQHLPLRVTELVQQLT-GQAPAPGQRVLVLELSCEGDDEDTAFPPL 1008          
The following BLAST results are available for this feature:
BLAST of CF835049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
UBA1_RAT3.087e-2937.36Ubiquitin-like modifier-activating enzyme 1 OS=Rat... [more]
UBA1_MOUSE3.087e-2937.36Ubiquitin-like modifier-activating enzyme 1 OS=Mus... [more]
UBA1_DICDI8.700e-2436.87Ubiquitin-like modifier-activating enzyme 1 OS=Dic... [more]
UBA6_HUMAN3.421e-2033.88Ubiquitin-like modifier-activating enzyme 6 OS=Hom... [more]
UBA6_MOUSE4.940e-1933.33Ubiquitin-like modifier-activating enzyme 6 OS=Mus... [more]
UBA7_HUMAN1.217e-1733.33Ubiquitin-like modifier-activating enzyme 7 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06J10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06J10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835049 ID=CF835049; Name=CF835049; organism=Citrus sinensis; type=EST; length=701bp
ACGTTAAGGAACTATGGCATCCCTGAAGTTGACAAGCTCAAGCCCAAGTT
CATTGCAGGGAGGATTATCCCAGCAATCGCAACCTCTACTGCCATGGCAA
CTGGTCTTGTGTGCTTGGAGCTTTATAAGGTTCTAGATGGTGGGCACAAA
CTGGAAGACTACCGAAATACCTTTGCCAATCTGGCCCTCCCTCTGTTCTC
GATGGCTGAGCCAGTTCCACCTAAGGTGTTCAAGCATCAGGATATGAGCT
GGACTGTGTGGGACCGGTGGATTTTGCGGGACAACCCTACACTAAGACAA
CTTCTTCAGTGGTTGCAGGACAAGGGCTTGAATGCTTACAGCATCTCCTA
TGGGAGTTGCTTGCTTTTTAACAGCATGTTTCCGAGGCACAAAGAAAGGA
TGGACAAGAAGGTGGTGGATCTGGTTAGGGATGTGGCCAAGGCAGAACTG
CCTCCATATCGACAACATTTTGATGTGGTAGTCGCATGCGTGGATGAAGA
TGACAATGATATTGATATTCCTCAAATCTCAATTTACTTTAGTTAGGTGT
TTCCGTCTAGTTAATTAGTTGACATTTATTGGTAGGATGAAAAATGAATG
ATATGCTTTGTGAACATGAGCAGATGTACTGGATTTGTTATGGTGACTAA
ATATTCTCCTATCAATCAGTAGCTTATTCAGTTCCAAAAAAAAAAAAAAA
A
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