CF835050

Overview
NameCF835050
Unique NameCF835050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:432..1148. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835050 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.393e-85
Identity = 153/199 (76.88%), Postives = 165/199 (82.91%), Query Frame = 3
Query:  126 VADGGRITMRRTVKSTPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 716
            +    + TMR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLADDP+ FAELKVKELKNGRLAMFSMF
Sbjct:   17 IQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMF 215          
BLAST of CF835050 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 3.126e-85
Identity = 152/198 (76.77%), Postives = 168/198 (84.85%), Query Frame = 3
Query:  138 GRITMRRTVKSTPQSI-----WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 716
            GRITMR+T    P+++     WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYRI                +FDPLGLADDP+ FAELKVKE+KNGRLAMFSMF
Sbjct:   31 GRITMRKTA-GKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 227          
BLAST of CF835050 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 3.126e-85
Identity = 154/195 (78.97%), Postives = 166/195 (85.13%), Query Frame = 3
Query:  138 GRITMRRTVKS--TPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 716
            GR++MR+TV    +  S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QV+LMG VEGYRI                +FDPLGLADDP+ FAELKVKELKNGRLAMFSMF
Sbjct:   29 GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMF 223          
BLAST of CF835050 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 4.082e-85
Identity = 161/224 (71.88%), Postives = 177/224 (79.02%), Query Frame = 3
Query:   69 AFAGQ--TALRQSNEFVRKVGVADG-GRITMRRTV--KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 716
            AFAG   ++++  N  +  VG A G  R+TMR+    KS   SI   WYGPDR  YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMG +EGYR+                 FDPLGLADDPD FAELKVKE+KNGRLAMFSMF
Sbjct:   15 AFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMF 238          
BLAST of CF835050 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 5.331e-85
Identity = 152/201 (75.62%), Postives = 169/201 (84.08%), Query Frame = 3
Query:  126 VADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 716
            V   G++TMR+T  K+ P S    WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMF
Sbjct:   26 VTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMF 226          
BLAST of CF835050 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 5.331e-85
Identity = 152/201 (75.62%), Postives = 169/201 (84.08%), Query Frame = 3
Query:  126 VADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 716
            V   G++TMR+T  K+ P S    WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMF
Sbjct:   26 VTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMF 226          
BLAST of CF835050 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 6.963e-85
Identity = 156/228 (68.42%), Postives = 179/228 (78.51%), Query Frame = 3
Query:   45 ATPSIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 716
            +T ++   +FAG+ A++ S       G    G++TMR+T          S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMF
Sbjct:    4 STMALSSPSFAGK-AVKLSPSSSEITG---NGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMF 227          
BLAST of CF835050 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 9.094e-85
Identity = 160/228 (70.18%), Postives = 180/228 (78.95%), Query Frame = 3
Query:   45 ATPSIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 716
            AT ++   +FAG+ A++ S       G    G+ TMR+TV K+ P S    WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTA LSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+                +FDPLGLADDP+ FAELKVKE+KNGRLAMFSMF
Sbjct:    4 ATMALSSPSFAGK-AVKFSPSSSEITG---NGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 227          
BLAST of CF835050 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.551e-84
Identity = 159/224 (70.98%), Postives = 177/224 (79.02%), Query Frame = 3
Query:   69 AFAGQ--TALRQSNEFVRKVGVADG-GRITMRRTV--KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 716
            AFAG   ++++  N  +  VG A G  R+TMR+    KS   SI   WYGPDR  YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMG +EGYR+                 FDPLGLADDPD FA++KVKE+KNGRLAMFSMF
Sbjct:   15 AFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMF 238          
BLAST of CF835050 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.551e-84
Identity = 158/228 (69.30%), Postives = 179/228 (78.51%), Query Frame = 3
Query:   45 ATPSIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 716
            +T ++   +FAG  A++ S       G    G+  MR+TV K+ P S    WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG +EGYR+                +FDPLGLADDP+ FAELKVKE+KNGRLAMFSMF
Sbjct:    4 STMALSSPSFAGN-AVKLSPSSSEITG---NGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 227          
The following BLAST results are available for this feature:
BLAST of CF835050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB21_CUCSA2.393e-8576.88Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2A_SPIOL3.126e-8576.77Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_SOYBN3.126e-8578.97Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB2A_PINSY4.082e-8571.88Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB25_NICPL5.331e-8575.62Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB21_TOBAC5.331e-8575.62Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB24_TOBAC6.963e-8568.42Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB25_PETSP9.094e-8570.18Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB2A_PYRPY1.551e-8470.98Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB27_TOBAC1.551e-8469.30Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06J11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06J11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835050 ID=CF835050; Name=CF835050; organism=Citrus sinensis; type=EST; length=718bp
GAAGCTTCACCATAAAAGGAAAAGCTTTCGCATAAGAACATATGGCAACC
CCTTCTATCCAACAATCAGCATTTGCTGGCCAGACCGCCTTGAGGCAATC
CAATGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTGGCCGTATCACCA
TGAGGAGGACTGTCAAATCCACTCCCCAGAGCATCTGGTACGGCCCAGAC
CGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACTTGAC
TGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCAGCAG
ACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGCAGA
TGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTCCAA
GAATGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAA
TCTTCTCTGAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCAT
GCTCAGAGCATTTTGGCTATCTGGGCCTGCCAGGTTGTGCTCATGGGTTT
TGTTGAAGGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACC
CACTTTACCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCC
GATCAATTTGCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGC
TATGTTCTCCATGTTTGG
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