CF835056

Overview
NameCF835056
Unique NameCF835056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3768 contig Csv1_Contig3768:1121..1723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835056 vs. ExPASy Swiss-Prot
Match: E134_ARATH (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.211e-15
Identity = 40/85 (47.06%), Postives = 50/85 (58.82%), Query Frame = -3 
Query:  273 WCVPKAGISDAQLQASLDYACSQG-IDCSPIQPGGACLEPNTVASHAAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPSYNGCVY 524
            +CV KA   D +L   L++AC QG  +C+ IQPG  C  PN V SHA+FA N YYQ        CDF  TA  T+++PSY  C Y
Sbjct:  362 FCVAKADADDDKLVDGLNWACGQGRANCAAIQPGQPCYLPNDVKSHASFAFNDYYQKMKSAGGTCDFDGTAITTTRDPSYRTCAY 446
[Close]
BLAST of CF835056 vs. ExPASy Swiss-Prot
Match: E13L4_ARATH (Glucan endo-1,3-beta-glucosidase-like protein At1g69295 OS=Arabidopsis thaliana GN=At1g69295 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.320e-13
Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = -3 
Query:  291 WCVPKAGISDAQLQASLDYACSQGIDCSPIQPGGACLEPNTVASHAAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPS 524
            +C+ K G ++  LQ ++DYAC  G DC+ IQP GAC +PNTV +H   A+N YYQ  A +   CDF+  A+ ++  PS
Sbjct:   21 YCLCKEG-NEQVLQKAIDYACGNGADCTQIQPTGACYQPNTVKNHCDVAVNSYYQKKASSGATCDFNGAASPSTTPPS 97
The following BLAST results are available for this feature:
BLAST of CF835056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
E134_ARATH7.211e-1547.06Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis ... [more]
E13L4_ARATH2.320e-1344.87Glucan endo-1,3-beta-glucosidase-like protein At1g... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06J15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06J15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835056 ID=CF835056; Name=CF835056; organism=Citrus sinensis; type=EST; length=604bp
TTTTTTTTTTTTTTAGAATATATTCAAACAGTTTATTTCAACCACCCTCT
TGTTGTTTTCAATATAGGGTTACAAATAATTTTAATACCTAAGAAAAAAG
AGAAGAAAAGAAAGAGTTTCCTTGATACATTTTAATCAAAGGAGGAAACC
TTTACAATTAAAGCTATATATAAAATAGGAACCATTAGATTCATCACTTT
TATTTCGCTTAACATTCCATTATTCAACATCAACTGGGAATTCGTCTGGC
CGTTTCAAGTACCCCCACTAGGATAGACACATCCATTGTAACTGGGATTT
TGGGATGTGAGAGTTGCCGTTTTTGAGAAGTCGCAGTTCCATGGATTTTT
TGCAGAAGTCTGATAGTAGAGATTCATGGCAAAAGCAGCATGTGATGCTA
CTGTATTTGGTTCCAAACAGGCACCTCCTGGCTGGATAGGACTGCAATCG
ATGCCTTGGCTGCAGGCATAGTCAAGACTTGCCTGCAGTTGTGCATCGGA
GATGCCGGCCTTGGGCACACACCAACCAGCTGCTGTTGGTTTTGGTGATG
GAGTCGTTGGAGTTTTTGGAGTTGATGGAGTCACTGGAGCTGATGGAGTC
CTGG
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