CF835057

Overview
NameCF835057
Unique NameCF835057
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3768 contig Csv1_Contig3768:682..1432. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835057 vs. ExPASy Swiss-Prot
Match: E139_ARATH (Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis thaliana GN=At5g58480 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.088e-14
Identity = 65/220 (29.55%), Postives = 97/220 (44.09%), Query Frame = 1
Query:   97 YMNMFDAQVDAVHSALNAMGFKDGEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPA--FERSFGLFKPDLSAAYDVGISKSSQXXXXXXXXXXXXXXXXXXXXXXXXGWCVPKAGISDAQLQASLDYACSQGIDCSPIQPGGACFEPNTVASHAAFAMNLYYQTSAKNPWNCDFLKTATLTSQNP 750
            Y N FD   D + SAL  +GF + +IVV++ GWP  G  N    +   A+A+   LI HL     T  +P   V+TYI +L DED +   A  FER +G+F  D  A Y+   +  +Q                         WCV       +   A    AC+   DC+ I PGG+C        + ++A N  YQ +  +  +C+F     +T+ +P
Sbjct:  238 YRNSFDLSYDTLVSALFTIGFSEVDIVVSKIGWPTDGAENATSLT---AEAFFKGLIVHLEKK--TASLPRPPVETYIESLLDEDQRNLSAGNFERHWGVFTFDGQAKYNFSFNHKNQVNAQNVQYLPPK-------------WCVVNNNKDLSNASARALEACAVA-DCTSILPGGSC-SGIRWPGNVSYAFNSLYQQNDHSAESCNFGGLGLITTVDP 437          
BLAST of CF835057 vs. ExPASy Swiss-Prot
Match: E13B_SOYBN (Glucan endo-1,3-beta-glucosidase (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.135e-14
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 1
Query:   91 IKYMNMFDAQVDAVHSALNAMGFKDGEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFA-LYDEDLKPGPAFERSFGLFKP 399
            + Y N+FDA +D++++AL  +G  + +IVV+E+GWP  G     G S++NA  Y  NLI H  S  GTP  PG+S++TY+F     E+ K        FGL  P
Sbjct:  152 VGYQNLFDAMLDSIYAALENVGASNLQIVVSESGWPSEGG---AGASIDNAGTYYANLIRHASSGDGTPKRPGESIETYLFGRCLSENQKQVLILSVIFGLSLP 252          
BLAST of CF835057 vs. ExPASy Swiss-Prot
Match: GUB2_HORVU (Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.018e-12
Identity = 44/120 (36.67%), Postives = 71/120 (59.17%), Query Frame = 1
Query:   79 SGTGIK-----YMNMFDAQVDAVHSALNAMGFKDGEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPAFERSFGLFKPDLSAAYDV 423
            SGT ++     Y N+FD  VDA ++A+   G    ++VV+E+GWP  G       +  NA+ YN +LI H+    GTP  PG +++TYIFA+++E+ K     E+++GLF P++   Y +
Sbjct:  198 SGTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVVSESGWPSGGG---TAATPANARFYNQHLINHVG--RGTPRHPG-AIETYIFAMFNENQKDS-GVEQNWGLFYPNMQHVYPI 310          
BLAST of CF835057 vs. ExPASy Swiss-Prot
Match: E13L4_ARATH (Glucan endo-1,3-beta-glucosidase-like protein At1g69295 OS=Arabidopsis thaliana GN=At1g69295 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.018e-12
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 1
Query:  520 WCVPKAGISDAQLQASLDYACSQGIDCSPIQPGGACFEPNTVASHAAFAMNLYYQTSAKNPWNCDFLKTATLTSQNP 750
            +C+ K G ++  LQ ++DYAC  G DC+ IQP GAC++PNTV +H   A+N YYQ  A +   CDF   A+ ++  P
Sbjct:   21 YCLCKEG-NEQVLQKAIDYACGNGADCTQIQPTGACYQPNTVKNHCDVAVNSYYQKKASSGATCDFNGAASPSTTPP 96          
BLAST of CF835057 vs. ExPASy Swiss-Prot
Match: E13L1_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 1 OS=Arabidopsis thaliana GN=At3g58100 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.269e-12
Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 1
Query:  520 WCVPKAGISDAQLQASLDYACSQG-IDCSPIQPGGACFEPNTVASHAAFAMNLYYQTSAKNPWNCDFLKTATLTSQNP 750
            WCV K    D+ LQ ++++AC QG  DC PIQ GG C +P  V   A+F  N YY  + +    C+F   A LTS NP
Sbjct:   41 WCVAKNNAEDSSLQTAIEWACGQGGADCGPIQQGGPCNDPTDVQKMASFVFNNYYLKNGEEDEACNFNNNAALTSLNP 118          
The following BLAST results are available for this feature:
BLAST of CF835057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
E139_ARATH1.088e-1429.55Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis ... [more]
E13B_SOYBN4.135e-1440.38Glucan endo-1,3-beta-glucosidase (Fragment) OS=Gly... [more]
GUB2_HORVU1.018e-1236.67Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=... [more]
E13L4_ARATH1.018e-1244.16Glucan endo-1,3-beta-glucosidase-like protein At1g... [more]
E13L1_ARATH2.269e-1243.59Glucan endo-1,3-beta-glucosidase-like protein 1 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06J15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06J15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835057 ID=CF835057; Name=CF835057; organism=Citrus sinensis; type=EST; length=751bp
GTTTTTCGCTCCCTAAGCGACCCGAGACCCGAGACTCTTGCCTTCTGTTT
GCTTTAACCCAACGCGGGACGAGTTGACTCCGGGACCGGGATCAAGTACA
TGAACATGTTCGACGCCCAGGTTGATGCCGTACATTCAGCCTTGAATGCA
ATGGGGTTCAAGGATGGGGAGATTGTGGTTGCAGAGACAGGGTGGCCTTA
CCGCGGAGACCCGAATGAGGTTGGACCTAGTGTTGAGAATGCCAAGGCCT
ATAACGGGAACTTGATTGCTCACCTTAGATCAATGGCTGGAACTCCATTG
ATGCCTGGAAAATCTGTGGATACATATATTTTTGCTCTCTATGATGAGGA
CTTGAAGCCTGGCCCTGCCTTTGAACGTTCATTTGGGCTCTTCAAGCCAG
ACCTTTCAGCAGCATATGATGTTGGTATTTCAAAGAGTAGCCAGACTCCA
TCAGCTCCAGTGACTCCATCAACTCCAAAAACTCCAACGACTCCATCACC
AAAACCAACAGCAGCTGGTTGGTGTGTGCCCAAGGCCGGCATCTCCGATG
CACAACTGCAGGCAAGTCTTGACTATGCCTGCAGCCAAGGCATCGATTGC
AGTCCTATCCAGCCAGGAGGTGCCTGTTTCGAACCAAATACAGTAGCATC
ACATGCTGCTTTTGCCATGAATCTCTACTATCAGACTTCTGCAAAAAATC
CATGGAACTGCGACTTTCTCAAAACGGCAACTCTCACATCCCAAAATCCC
A
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