CF835059

Overview
NameCF835059
Unique NameCF835059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.935e-18
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 3
Query:   36 MHLFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 263
            M + VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.935e-18
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 3
Query:   36 MHLFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 263
            M + VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.935e-18
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 3
Query:   36 MHLFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 263
            M + VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.935e-18
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 3
Query:   36 MHLFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 263
            M + VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: RS27A_RAT (40S ribosomal protein S27a OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.834e-18
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 3
Query:  333 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 491
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNK 76          
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: RS27A_MOUSE (40S ribosomal protein S27a OS=Mus musculus GN=Rps27a PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.834e-18
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 3
Query:  333 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 491
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNK 76          
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: RUB3_ARATH (NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN=RUB3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.245e-17
Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = 3
Query:   36 MHLFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 263
            M + VKTLT K I +E+E +DTI+ +K +I++KEGIPP  QR+++ GKQL D  T   YN+++ S LHLVL LRGG
Sbjct:    1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76          
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: RS27A_DROME (40S ribosomal protein S27a OS=Drosophila melanogaster GN=RpS27A PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 3
Query:  333 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 491
            LAVL++YKVD++GK+ RLR+ECP   CGAG FMA H DRHYCGKC LT+V+ K
Sbjct:   24 LAVLKYYKVDENGKIHRLRRECPGENCGAGVFMAAHEDRHYCGKCNLTFVFSK 76          
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 3
Query:   36 MHLFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 263
            M + VKTLTGK I ++++ +D I  +K ++++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGG 76          
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.230e-17
Identity = 39/77 (50.65%), Postives = 57/77 (74.03%), Query Frame = 3
Query:   36 MHLFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 266
            M + VKTLTGK I L+++ +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG+
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGGS 77          
The following BLAST results are available for this feature:
BLAST of CF835059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
NEDD8_RABIT2.935e-1855.26NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1[more]
NEDD8_MOUSE2.935e-1855.26NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2[more]
NEDD8_HUMAN2.935e-1855.26NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1[more]
NEDD8_BOVIN2.935e-1855.26NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1[more]
RS27A_RAT3.834e-1869.8140S ribosomal protein S27a OS=Rattus norvegicus GN... [more]
RS27A_MOUSE3.834e-1869.8140S ribosomal protein S27a OS=Mus musculus GN=Rps2... [more]
RUB3_ARATH3.245e-1753.95NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN... [more]
RS27A_DROME4.239e-1767.9240S ribosomal protein S27a OS=Drosophila melanogas... [more]
NEDD8_DICDI5.536e-1752.63NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV... [more]
UBL1_SCHPO7.230e-1750.65Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06J16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835059 ID=CF835059; Name=CF835059; organism=Citrus sinensis; type=EST; length=672bp
CTGGAAATTTGCTGGGTCTCTCCTCATCTGCAGCCATGCACCTCTTCGTG
AAAACCCTAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCGGACAC
CATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGG
ACCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACC
CTAGCCGACTACAACATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCG
TCTCCGTGGTGGCGCGAAGAAGCGTAAGAAGAAGACCTACACCAAGCCGA
AAAAGATCAAGCACAAGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTT
TACAAGGTCGATGATTCTGGAAAGGTCCAGAGGCTGAGGAAGGAGTGTCC
GAATGCTGAGTGTGGAGCCGGCACCTTCATGGCTAACCACTTTGACAGGC
ACTACTGCGGCAAGTGTGGACTCACCTATGTTTACCAGAAGGCTGGCGGT
GATTGATCGAGATTAGGTGGTTGTTTTGCTATTTTTAATTAGTATTAATT
ACTATGGTTTTTGTGGTTCAAAAATTATGACTCTTTCGTAATTTTGTTTG
ACTATATACTTGTTTGCTTGAGCGTTTTAATTAAATGGTTATCTGTTTTA
AATTTTAAAAAAAAAAAAAAAA
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