CF835059

Overview
NameCF835059
Unique NameCF835059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835059_ssr315 microsatellite CF835059_ssr315:315..326. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10133 contig Csv1_Contig10133:11..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: RS27A_DAUCA (40S ribosomal protein S27a (Fragment) OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 3
Query:  333 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGK 464
            LAVLQFYKVD+SGKVQRLRKECPN ECGAGTFMANHFDRHYCGK
Sbjct:   24 LAVLQFYKVDESGKVQRLRKECPNGECGAGTFMANHFDRHYCGK 67          
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = 3
Query:   36 MHLFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 263
            M + VKTLTGK I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76          
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 45/72 (62.50%), Postives = 57/72 (79.17%), Query Frame = 3
Query:   48 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 263
            VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLVL LRGG
Sbjct:    5 VKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGG 76          
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: RS27A_CHICK (40S ribosomal protein S27a OS=Gallus gallus GN=RPS27A PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.009e-18
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 3
Query:  333 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 491
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSEECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: RS27A_HUMAN (40S ribosomal protein S27a OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.318e-18
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 3
Query:  333 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 491
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: RS27A_CAVPO (40S ribosomal protein S27a OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.318e-18
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 3
Query:  333 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 491
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: RS27A_BOVIN (40S ribosomal protein S27a OS=Bos taurus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.318e-18
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 3
Query:  333 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 491
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.248e-18
Identity = 41/76 (53.95%), Postives = 59/76 (77.63%), Query Frame = 3
Query:   36 MHLFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 263
            +++ V+TLTGK I +++E +DT+D +K +++++EGIPP QQRLI+ GKQL D +T  DY I+  S LHLVL LRGG
Sbjct:    1 LNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGG 76          
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: RS27A_ICTPU (40S ribosomal protein S27a OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.935e-18
Identity = 38/53 (71.70%), Postives = 46/53 (86.79%), Query Frame = 3
Query:  333 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 491
            LAVL++YKVD++GK+ RLR+ECP  ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKIHRLRRECPADECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.935e-18
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 3
Query:   36 MHLFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 263
            M + VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
The following BLAST results are available for this feature:
BLAST of CF835059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
RS27A_DAUCA2.033e-1995.4540S ribosomal protein S27a (Fragment) OS=Daucus ca... [more]
NEDD8_CAEEL2.033e-1959.21NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1[more]
RUB2_ARATH2.655e-1962.50NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN... [more]
RS27A_CHICK1.009e-1871.7040S ribosomal protein S27a OS=Gallus gallus GN=RPS... [more]
RS27A_HUMAN1.318e-1871.7040S ribosomal protein S27a OS=Homo sapiens GN=RPS2... [more]
RS27A_CAVPO1.318e-1871.7040S ribosomal protein S27a OS=Cavia porcellus GN=R... [more]
RS27A_BOVIN1.318e-1871.7040S ribosomal protein S27a OS=Bos taurus GN=RPS27A... [more]
RUB3_ORYSJ2.248e-1853.95NEDD8-like protein RUB3 OS=Oryza sativa subsp. jap... [more]
RS27A_ICTPU2.935e-1871.7040S ribosomal protein S27a OS=Ictalurus punctatus ... [more]
NEDD8_RAT2.935e-1855.26NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06J16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835059 ID=CF835059; Name=CF835059; organism=Citrus sinensis; type=EST; length=672bp
CTGGAAATTTGCTGGGTCTCTCCTCATCTGCAGCCATGCACCTCTTCGTG
AAAACCCTAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCGGACAC
CATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGG
ACCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACC
CTAGCCGACTACAACATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCG
TCTCCGTGGTGGCGCGAAGAAGCGTAAGAAGAAGACCTACACCAAGCCGA
AAAAGATCAAGCACAAGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTT
TACAAGGTCGATGATTCTGGAAAGGTCCAGAGGCTGAGGAAGGAGTGTCC
GAATGCTGAGTGTGGAGCCGGCACCTTCATGGCTAACCACTTTGACAGGC
ACTACTGCGGCAAGTGTGGACTCACCTATGTTTACCAGAAGGCTGGCGGT
GATTGATCGAGATTAGGTGGTTGTTTTGCTATTTTTAATTAGTATTAATT
ACTATGGTTTTTGTGGTTCAAAAATTATGACTCTTTCGTAATTTTGTTTG
ACTATATACTTGTTTGCTTGAGCGTTTTAATTAAATGGTTATCTGTTTTA
AATTTTAAAAAAAAAAAAAAAA
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