CF835059
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: RS27A_DAUCA (40S ribosomal protein S27a (Fragment) OS=Daucus carota PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19 Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 3 Query: 333 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGK 464 LAVLQFYKVD+SGKVQRLRKECPN ECGAGTFMANHFDRHYCGK Sbjct: 24 LAVLQFYKVDESGKVQRLRKECPNGECGAGTFMANHFDRHYCGK 67
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19 Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = 3 Query: 36 MHLFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 263 M + VKTLTGK I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY + S LHLVL LRGG Sbjct: 1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19 Identity = 45/72 (62.50%), Postives = 57/72 (79.17%), Query Frame = 3 Query: 48 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 263 VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T DY I+ S LHLVL LRGG Sbjct: 5 VKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGG 76
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: RS27A_CHICK (40S ribosomal protein S27a OS=Gallus gallus GN=RPS27A PE=3 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 1.009e-18 Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 3 Query: 333 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 491 LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K Sbjct: 24 LAVLKYYKVDENGKISRLRRECPSEECGAGVFMASHFDRHYCGKCCLTYCFNK 76
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: RS27A_HUMAN (40S ribosomal protein S27a OS=Homo sapiens GN=RPS27A PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.318e-18 Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 3 Query: 333 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 491 LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K Sbjct: 24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: RS27A_CAVPO (40S ribosomal protein S27a OS=Cavia porcellus GN=RPS27A PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.318e-18 Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 3 Query: 333 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 491 LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K Sbjct: 24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: RS27A_BOVIN (40S ribosomal protein S27a OS=Bos taurus GN=RPS27A PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.318e-18 Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 3 Query: 333 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 491 LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K Sbjct: 24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.248e-18 Identity = 41/76 (53.95%), Postives = 59/76 (77.63%), Query Frame = 3 Query: 36 MHLFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 263 +++ V+TLTGK I +++E +DT+D +K +++++EGIPP QQRLI+ GKQL D +T DY I+ S LHLVL LRGG Sbjct: 1 LNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGG 76
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: RS27A_ICTPU (40S ribosomal protein S27a OS=Ictalurus punctatus GN=rps27a PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.935e-18 Identity = 38/53 (71.70%), Postives = 46/53 (86.79%), Query Frame = 3 Query: 333 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 491 LAVL++YKVD++GK+ RLR+ECP ECGAG FMA+HFDRHYCGKC LTY + K Sbjct: 24 LAVLKYYKVDENGKIHRLRRECPADECGAGVFMASHFDRHYCGKCCLTYCFNK 76
BLAST of CF835059 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.935e-18 Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 3 Query: 36 MHLFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 263 M + VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I S LHLVL LRGG Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 The following BLAST results are available for this feature:
BLAST of CF835059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 123
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835059 ID=CF835059; Name=CF835059; organism=Citrus sinensis; type=EST; length=672bpback to top |