CF835062

Overview
NameCF835062
Unique NameCF835062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.742e-27
Identity = 53/130 (40.77%), Postives = 86/130 (66.15%), Query Frame = -3
Query:  266 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKRE 655
            +R++++ +RL  +P  GI   P ++N   ++ VI GP D+P++GGTFKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 135          
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.742e-27
Identity = 53/130 (40.77%), Postives = 86/130 (66.15%), Query Frame = -3
Query:  266 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKRE 655
            +R++++ +RL  +P  GI   P ++N   ++ VI GP D+P++GGTFKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 135          
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.888e-27
Identity = 62/162 (38.27%), Postives = 92/162 (56.79%), Query Frame = -3
Query:  230 MSTPARKRLMRDFKRLQQDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 673
            M++ A   L +  K L + P  G S G   + NI  W+  I GP DT ++GG F   + F ++YPN PPTVRF S ++HPN+Y DG +C+ IL               +W+P++ V +I+ SI S+L  PN  SPAN EAA+ + E + E+ ++V   V +S
Sbjct:    1 MNSQACLLLQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWREKRDEFKKKVSRCVRKS 162          
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.337e-27
Identity = 61/156 (39.10%), Postives = 92/156 (58.97%), Query Frame = -3
Query:  230 KRLMRDFKRLQQDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 655
            K+ + D +R+  D   G S G   DN+I  W  ++ GP DT ++GG FK  L F  DYP KPP ++F+S ++HPNI  +G++C+ IL             + +W P++ V  IL S+ S+L DPN  SPAN +AA+M  EN  E+ ++V + V +S
Sbjct:    9 KKQLADMRRVPVD---GFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRS 161          
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UBC14_ARATH (Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana GN=UBC14 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.089e-26
Identity = 59/154 (38.31%), Postives = 88/154 (57.14%), Query Frame = -3
Query:  230 LMRDFKRLQQDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 649
            L +  K L + P  G S G   + N+  W+  I GP DT ++GG F   + F E+YP  PPTV F S M+HPN+Y+DG +C+ IL               +W+P++ V +I+ SI S+L  PN  SPAN EAA+ + +N+ E+ ++V   V +S
Sbjct:   10 LQKQLKDLCKKPVDGFSAGLVDEKNVFQWSVSIMGPPDTLYEGGFFNAIMSFPENYPVSPPTVTFTSEMWHPNVYSDGKVCISILHPPGDDPHGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDNRAEFRKKVSRCVRRS 163          
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.422e-26
Identity = 54/135 (40.00%), Postives = 81/135 (60.00%), Query Frame = -3
Query:  230 GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICL------------DILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 598
            G   D+N+  W   I GP +T +DGG F   + F ++YPN PPTVRF S M+HPN+Y DG +C+            ++   +W+P++ V +I+ SI S+L  PN  SPAN EAA+ + E + E+ ++VR  V +S
Sbjct:   30 GFVDDSNVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISIHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANIEAAKDWREKQDEFKKKVRRAVRKS 164          
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.422e-26
Identity = 58/143 (40.56%), Postives = 85/143 (59.44%), Query Frame = -3
Query:  245 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 673
            +ST A KR+ ++   +  DPP   S  P+ +NI  W + I GP  + ++GG F L + F+ DYP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  +  N+ E++R  R+
Sbjct:   53 LSTSA-KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQ 194          
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.422e-26
Identity = 58/143 (40.56%), Postives = 85/143 (59.44%), Query Frame = -3
Query:  245 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 673
            +ST A KR+ ++   +  DPP   S  P+ +NI  W + I GP  + ++GG F L + F+ DYP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  +  N+ E++R  R+
Sbjct:   53 LSTSA-KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQ 194          
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.426e-26
Identity = 58/143 (40.56%), Postives = 85/143 (59.44%), Query Frame = -3
Query:  245 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 673
            +ST A KR+ ++   +  DPP   S  P+ +NI  W + I GP  + ++GG F L + F+ DYP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  +  N+ E++R  R+
Sbjct:   59 LSTSA-KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQ 200          
BLAST of CF835062 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.426e-26
Identity = 58/143 (40.56%), Postives = 85/143 (59.44%), Query Frame = -3
Query:  245 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 673
            +ST A KR+ ++   +  DPP   S  P+ +NI  W + I GP  + ++GG F L + F+ DYP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  +  N+ E++R  R+
Sbjct:   59 LSTSA-KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQ 200          
The following BLAST results are available for this feature:
BLAST of CF835062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
UBE2N_HUMAN3.742e-2740.77Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN3.742e-2740.77Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBC13_ARATH4.888e-2738.27Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]
UBC7_CAEEL8.337e-2739.10Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]
UBC14_ARATH1.089e-2638.31Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis ... [more]
UBC7_WHEAT1.422e-2640.00Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]
UB2E2_MOUSE1.422e-2640.56Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]
UB2E2_HUMAN1.422e-2640.56Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]
UB2E3_MOUSE2.426e-2640.56Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN2.426e-2640.56Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06J18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835062 ID=CF835062; Name=CF835062; organism=Citrus sinensis; type=EST; length=699bp
TTTTTTTTTTTTTTTGAACATGAAACATGGGAAATCATATAAATTCCTCT
CAAATTGGTACATAAAATTCTATTGTACGCAAGCTCAAAGGCACACAATA
CTGAAAGTAGTACTATATTATAATATGGATTAAATAGCTTTTAACATTCA
TATTTGGGAGGGGTAGCAAGACAACTCTGCTTGGTTTTTAATGAGGCAGT
GAATGAGAATGAAGTTAATCTGCTGTCCAGCTCTGTTCCACTATTTCCCT
TACTCTTCTGTTGTATTCACGCTTGTTCTCACTAAACATCCGAGCAGCTT
CTGAATTTGCAGGAGAATTTGGGTTGGGATCACAGAGCAATGACTGAATA
GATGTGAGTATAGCTGCCACATCATATATAGGACTCCACTGATTTTGCAA
AATATCCAGACAAATACTTCCATCGGCATATATATTTGGATGAAACATCC
TAGAAACAAATCGCACAGTTGGCGGTTTGTTTGGATAATCCTCCGTAAAC
TGAAGGGTCAACTTGAACGTACCTCCATCCCATGGCGTATCATCAGGACC
AAATATCACAGCATTCCAGAGCATAATATTGTTGTCTTGGGGAGCCCCAC
TGATGCCTGCAGGCGGGTCTTGCTGCAACCTTTTAAAATCTCTCATCAGC
CTCTTCCTTGCAGGTGTCGACATCGTCACCACCCACAAACTTCAGAAAT
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