CF835063

Overview
NameCF835063
Unique NameCF835063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UB2L3_MOUSE (Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus GN=Ube2l3 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.315e-17
Identity = 40/143 (27.97%), Postives = 79/143 (55.24%), Query Frame = 1
Query:  193 RKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 618
            RK  M++F+ +Q D          + N++ W  +I  PD+ P+D G F++ + F  +YP KPP + F ++++HPNI   G +CL ++    W P      ++ S+ +L+ DP P  P  ++ A  +S++++++ +   E  ++
Sbjct:   15 RKCGMKNFRNIQVD----------EANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKK 146          
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UB2L3_HUMAN (Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens GN=UBE2L3 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.315e-17
Identity = 40/143 (27.97%), Postives = 79/143 (55.24%), Query Frame = 1
Query:  193 RKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 618
            RK  M++F+ +Q D          + N++ W  +I  PD+ P+D G F++ + F  +YP KPP + F ++++HPNI   G +CL ++    W P      ++ S+ +L+ DP P  P  ++ A  +S++++++ +   E  ++
Sbjct:   15 RKCGMKNFRNIQVD----------EANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKK 146          
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UB2L3_BOVIN (Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.315e-17
Identity = 40/143 (27.97%), Postives = 79/143 (55.24%), Query Frame = 1
Query:  193 RKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 618
            RK  M++F+ +Q D          + N++ W  +I  PD+ P+D G F++ + F  +YP KPP + F ++++HPNI   G +CL ++    W P      ++ S+ +L+ DP P  P  ++ A  +S++++++ +   E  ++
Sbjct:   15 RKCGMKNFRNIQVD----------EANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKK 146          
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UB2L3_PONAB (Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.330e-17
Identity = 39/145 (26.90%), Postives = 80/145 (55.17%), Query Frame = 1
Query:  190 ARKRLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 618
            A +RLM++ + +++           D  N++ W  +I  PD+ P+D G F++ + F  +YP KPP + F ++++HPNI   G +CL ++    W P      ++ S+ +L+ DP P  P  ++ A  +S++++++ +   E  ++
Sbjct:    3 ASRRLMKELEEIRKCGMKNFRNIRVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKK 146          
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.655e-17
Identity = 48/136 (35.29%), Postives = 77/136 (56.62%), Query Frame = 1
Query:  178 MSTPARKRLMRDFK---RLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSE 573
            M+  A  R+ R+FK   R ++     I     +++       I GP DTP++GG F L ++  E YP  PP VRF++R++HPNI +  G+ICLDIL++ W+    +  +L S+Q+LL    P+ P ++  A  F +
Sbjct:    1 MANMAVSRIKREFKEVMRSEEIVQCSIKIELVNDSWTELRGEIAGPPDTPYEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKD 136          
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UB2L6_HUMAN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo sapiens GN=UBE2L6 PE=1 SV=4)

HSP 1 Score: 88.1965 bits (217), Expect = 5.655e-17
Identity = 40/141 (28.37%), Postives = 78/141 (55.32%), Query Frame = 1
Query:  190 ARKRLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 606
            A  R++++ + LQ+ PP  +     D+ N+++W+A++  PD  P+    F L + F  +YP KPP ++F ++++HPN+  +G ICL I+ ++ W P      +L ++  L+  PN   P   + A + ++N   + +   E
Sbjct:    3 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEE 142          
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UB2L6_BOVIN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos taurus GN=UBE2L6 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.386e-17
Identity = 40/145 (27.59%), Postives = 82/145 (56.55%), Query Frame = 1
Query:  190 ARKRLMRDFKRLQQDPPAGISG-APQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 618
            A KR+ ++ + LQ++ P  +     +++N+++W+A++  P+  P++   F+L + F  +YP +PPTV+F +R++HPN+  DG +CL I+ +  W        +L ++  L+  P P  P   E A   +++   +++  +E   Q
Sbjct:    3 ASKRVAKELEDLQKELPKYLRNLCSEEDNVLVWHALLL-PERPPYNLKAFRLCISFPREYPFQPPTVKFTTRIYHPNVDRDGRVCLPIISKKNWKASTRTCQVLEALNMLVNQPEPGQPVRLELAEQLTQDPELFDQMAQEFTLQ 146          
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENLA (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus laevis GN=ube2z PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.149e-16
Identity = 50/151 (33.11%), Postives = 79/151 (52.32%), Query Frame = 1
Query:  181 STPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR-----MFHPNIYADGSICLDILQN----QWSPIYDVAAILTSIQSLLCD-PNPNSPANSEAARMFSENKREYNRRVR 603
            ST    R+ RD   + ++PP G+   P  +++   +A+I GP DTP++GG F    +   DYP  PP V+ ++       F+PN Y +G +CL IL       WSP   ++++L SIQSL+ + P  N P   +     S + + YN  +R
Sbjct:   56 STQCVLRIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSLSSVLISIQSLMTENPYHNEPGFEQ--ERHSGDSKNYNECIR 204          
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENTR (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropicalis GN=ube2z PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.787e-16
Identity = 48/145 (33.10%), Postives = 77/145 (53.10%), Query Frame = 1
Query:  199 RLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR-----MFHPNIYADGSICLDILQN----QWSPIYDVAAILTSIQSLLCD-PNPNSPANSEAARMFSENKREYNRRVR 603
            R+ RD   + ++PP G+   P  +++   +A+I GP DTP++GG F    +   DYP  PP V+ ++       F+PN Y +G +CL IL       WSP   ++++L SIQSL+ + P  N P   +     S + + YN  +R
Sbjct:   62 RIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSLSSVLISIQSLMTENPYHNEPGFEQ--ERHSGDSKNYNECIR 204          
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UBE2Z_DANRE (Ubiquitin-conjugating enzyme E2 Z OS=Danio rerio GN=ube2z PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.787e-16
Identity = 47/144 (32.64%), Postives = 77/144 (53.47%), Query Frame = 1
Query:  199 RLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR-----MFHPNIYADGSICLDILQN----QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 603
            R+ RD   + ++PP G+   P  +++   +A+I GP DTP++GG F    +   DYP  PP V+ ++       F+PN Y +G +CL IL       WSP   ++++L SIQSL+ +   ++    E  R   ++K  YN  +R
Sbjct:   75 RIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLITTGHNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERHPGDSK-NYNECIR 217          
The following BLAST results are available for this feature:
BLAST of CF835063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
UB2L3_MOUSE3.315e-1727.97Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus... [more]
UB2L3_HUMAN3.315e-1727.97Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens... [more]
UB2L3_BOVIN3.315e-1727.97Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus G... [more]
UB2L3_PONAB4.330e-1726.90Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii... [more]
UBCD4_DROME5.655e-1735.29Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophi... [more]
UB2L6_HUMAN5.655e-1728.37Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo s... [more]
UB2L6_BOVIN7.386e-1727.59Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos ta... [more]
UBE2Z_XENLA2.149e-1633.11Ubiquitin-conjugating enzyme E2 Z OS=Xenopus laevi... [more]
UBE2Z_XENTR4.787e-1633.10Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropi... [more]
UBE2Z_DANRE4.787e-1632.64Ubiquitin-conjugating enzyme E2 Z OS=Danio rerio G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06J18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835063 ID=CF835063; Name=CF835063; organism=Citrus sinensis; type=EST; length=789bp
TCCACTTAAGCCTTTTTCTTCTTTTCTTTCGTTGTATAAATTCAATCAAT
TCCCTCGCTGAAACTTGAAGCCGCTTAGCTTTCCCTCTTGTTTACCAGTT
TCTCGTACCGTCTCCTTTCAGGACGACGACTTGGATTTTTCTTTTGATTG
AATTTCTGAAGTTTGTGGGTGGTGACGATGTCGACACCTGCAAGGAAGAG
GCTGATGAGAGATTTTAAAAGGTTGCAGCAAGACCCGCCTGCAGGCATCA
GTGGGGCTCCCCAAGACAACAATATTATGCTCTGGAATGCTGTGATATTT
GGTCCTGATGATACGCCATGGGATGGAGGTACGTTCAAGTTGACCCTTCA
GTTTACGGAGGATTATCCAAACAAACCGCCAACTGTGCGATTTGTTTCTA
GGATGTTTCATCCAAATATATATGCCGATGGAAGTATTTGTCTGGATATT
TTGCAAAATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACATC
TATTCAGTCATTGCTCTGTGATCCCAACCCAAATTCTCCTGCAAATTCAG
AAGCTGCTCGGATGTTTAGTGAGAACAAGCGTGAATACAACAGAAGAGTA
AGGGAAATAGTGGAACAGAGCTGGACAGCAGATTAACTTCATTCTCATTC
ACTGCCTCATTAAAAACCAAGCAGAGTTGTCTTGCTACCCCTCCCAAATA
TGAATGTTAAAAGCTATTTAATCCATATTATAATATAGTACTACTTTCAG
TATTGTGTGCCTTTGAGCTTGCGTACAATAGAATTTTAT
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