CF835063

Overview
NameCF835063
Unique NameCF835063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3187 contig Csv1_Contig3187:34..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.811e-31
Identity = 61/139 (43.88%), Postives = 87/139 (62.59%), Query Frame = 1
Query:  190 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 606
            A KR+ ++   L +DPP+  S  P   ++  W A I GP D+P+ GG F L + F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI S+L DPNP+ P   E A ++  ++  Y    RE
Sbjct:    2 AFKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATARE 140          
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.365e-31
Identity = 61/139 (43.88%), Postives = 87/139 (62.59%), Query Frame = 1
Query:  190 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 606
            A KR+ ++   L +DPP+  S  P   ++  W A I GP D+P+ GG F L + F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI S+L DPNP+ P   E A ++   + +Y    RE
Sbjct:    2 ALKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTARE 140          
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.533e-30
Identity = 58/137 (42.34%), Postives = 92/137 (67.15%), Query Frame = 1
Query:  196 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 606
            +R++++ +RL Q+P  GI+  P +NN   ++ ++ GP+D+P++GG FKL L   EDYP   P VRF+++++HPNI   G ICLD+L+++WSP   +  IL SIQ+LL  PNP+ P  ++ A ++  N+ E  R  RE
Sbjct:    6 RRIIKETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNARE 142          
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.415e-30
Identity = 59/137 (43.07%), Postives = 88/137 (64.23%), Query Frame = 1
Query:  196 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 606
            KR+ ++   L +DPPA  S  P  +++  W A I GP D+P+ GG F L++ F  DYP KPP V F ++++HPNI + G+ICLDIL++QWSP   ++ +L SI SLL D NP+ P   E A+++  +K +Y    +E
Sbjct:    5 KRIAKELSDLGRDPPASCSAGPVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKTDKAKYEATAKE 141          
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 5.825e-30
Identity = 61/158 (38.61%), Postives = 96/158 (60.76%), Query Frame = 1
Query:  190 ARKRLMRDFKRLQQDPPAGISGAPQ-DNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 621
            A +RLM+++K L ++ P GI+  P  +++   W+ +I GPD TP++GG +  TL+F  DYP  PPT++F    FHPN+Y DG++C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A +M+ E++ EY R VR +  ++
Sbjct:    6 ALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLARKT 163          
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.825e-30
Identity = 58/137 (42.34%), Postives = 88/137 (64.23%), Query Frame = 1
Query:  196 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 606
            KR+ ++   L++DPP   S  P  +++  W A I GP D+P+ GG F L++ F  DYP KPP + F ++++HPNI A+G+ICLDIL++QWSP   ++ +L SI SLL D NP+ P   E A ++  ++ +Y    RE
Sbjct:    5 KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATARE 141          
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.608e-30
Identity = 64/138 (46.38%), Postives = 91/138 (65.94%), Query Frame = 1
Query:  196 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREI 609
            KRL  +   L      GIS  P+++NI  W   I G  DT ++G  ++L+L F+ DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YDV  IL SIQSLL +PN +SP N++AA+++S N+ EY + V ++
Sbjct:   38 KRLQSELMGLMMGGGPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLWS-NQEEYRKMVEKL 174          
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.936e-30
Identity = 64/133 (48.12%), Postives = 89/133 (66.92%), Query Frame = 1
Query:  196 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNR 594
            KRL  +   L   P  GIS  P  +NI  W   I G  DT ++   FK++L+F  DYP KPPTV+F ++ FHPN+  +G+ICLDIL+++WSP+Y+V ++L SIQSLL +PN  SP NS AA ++S N+ EY +
Sbjct:    9 KRLQSELMNLMMGPSPGISAFPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLWS-NQDEYKK 140          
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.891e-29
Identity = 55/137 (40.15%), Postives = 89/137 (64.96%), Query Frame = 1
Query:  196 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 606
            KR+ ++   L +DPP+  S  P  +++  W A I GP D+P+ GG F L++ F  DYP KPP +   ++++HPNI ++G+ICLDIL++QWSP   ++ +L SI SLL D NP+ P   E A ++ +++++Y    +E
Sbjct:    4 KRINKELSDLGRDPPSSCSAGPVGDDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYEATAKE 140          
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.440e-29
Identity = 63/138 (45.65%), Postives = 90/138 (65.22%), Query Frame = 1
Query:  196 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREI 609
            KRL  +   L      GIS  P+++NI  W   I G  DT ++G  ++L+L F+ DYP K P V+F +  FHPN+   G+ICLDILQ++WS  YDV  IL SIQSLL +PN +SP N++AA+++S N+ EY + V ++
Sbjct:   39 KRLQSELMGLMMGADPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLWS-NQEEYRKMVEKL 175          
The following BLAST results are available for this feature:
BLAST of CF835063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
UBC1_COLGL1.811e-3143.88Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBC1_MAGGR2.365e-3143.88Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UBE2N_DROME1.533e-3042.34Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UBC5_YEAST3.415e-3043.07Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC7_SCHPO5.825e-3038.61Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UBC4_YEAST5.825e-3042.34Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC20_ARATH7.608e-3046.38Ubiquitin carrier protein E2 20 OS=Arabidopsis tha... [more]
UBE2C_DICDI9.936e-3048.12Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]
UBC4_CANAL2.891e-2940.15Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UBC19_ARATH6.440e-2945.65Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06J18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835063 ID=CF835063; Name=CF835063; organism=Citrus sinensis; type=EST; length=789bp
TCCACTTAAGCCTTTTTCTTCTTTTCTTTCGTTGTATAAATTCAATCAAT
TCCCTCGCTGAAACTTGAAGCCGCTTAGCTTTCCCTCTTGTTTACCAGTT
TCTCGTACCGTCTCCTTTCAGGACGACGACTTGGATTTTTCTTTTGATTG
AATTTCTGAAGTTTGTGGGTGGTGACGATGTCGACACCTGCAAGGAAGAG
GCTGATGAGAGATTTTAAAAGGTTGCAGCAAGACCCGCCTGCAGGCATCA
GTGGGGCTCCCCAAGACAACAATATTATGCTCTGGAATGCTGTGATATTT
GGTCCTGATGATACGCCATGGGATGGAGGTACGTTCAAGTTGACCCTTCA
GTTTACGGAGGATTATCCAAACAAACCGCCAACTGTGCGATTTGTTTCTA
GGATGTTTCATCCAAATATATATGCCGATGGAAGTATTTGTCTGGATATT
TTGCAAAATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACATC
TATTCAGTCATTGCTCTGTGATCCCAACCCAAATTCTCCTGCAAATTCAG
AAGCTGCTCGGATGTTTAGTGAGAACAAGCGTGAATACAACAGAAGAGTA
AGGGAAATAGTGGAACAGAGCTGGACAGCAGATTAACTTCATTCTCATTC
ACTGCCTCATTAAAAACCAAGCAGAGTTGTCTTGCTACCCCTCCCAAATA
TGAATGTTAAAAGCTATTTAATCCATATTATAATATAGTACTACTTTCAG
TATTGTGTGCCTTTGAGCTTGCGTACAATAGAATTTTAT
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